Gvermi6718.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6718.t1
Unique Name	Gvermi6718.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	623

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2084572..2086440 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6718	Gvermi6718	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 2084572..2086440 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6718.t1.start1	Gvermi6718.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 2084572..2084574 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6718.t1.CDS1	Gvermi6718.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 2084572..2086440 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6718.t1.exon1	Gvermi6718.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 2084572..2086440 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6718.t1.stop1	Gvermi6718.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 2086438..2086440 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6718.t1	Gvermi6718.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 2084572..2086440 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:2084572..2086440+
coding sequence from alignment at ScGOVlb_88:2084572..2086440+

mRNA sequence

>Gvermi6718.t1 ID=Gvermi6718.t1|Name=Gvermi6718.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=623bp
MSGRLHALLRFSSECSSLLPSRVANRILSSPAIFLQPKRYCLAPREDIVP
SLAKAVEGERKSAAEALPVTIPKTLPNTRENRSVKPSDLYNALVHEGESR
HLSKIWADAIAVTTDGSKVPEKDDSNWKKRLEQCRMDGNSDNALNIVTEI
NEEGYLISARTAVIVIETCIAAGEYEGAEHVLAILKSFPNDHPTRTTQSV
CMARTLLAMSFTSRGWYERALQVIGFPNERFVTVDAKLIGTLNELGLGRD
SLAWGVLLKALTKIGRAETAVAVVDVAMRQGVGMTDSLLHLTIDSLRVLN
RWKDAEWLFTKALEKGIKPSEMTLGSILMSLTSRDARTVVAKTRIEEIVN
MAKHPSPRFMKTAIMALTSVGLVEKAENLFHEVGQSHPSGVPDEETFGNL
MAGYGNHLQLMPAEVADEVLANGKLEEVNKKADQLWGLYLKHHRTLKIGS
LRLSQRNMMIGNYLRVKIRSYRIKEAVDILEVLVVSRDMYPTLNVGIGHI
CSTLGAIELCCDVLQLERLTEIMRQGGIKHDMRSLAFAVGTYVGDGNLSA
ALKLVEQHFADVTENETVSSQFRNHHPQLLFRRMQTLRSALRDSGIKKLK
TLDDSLRNFERRHAMGGSSASG*

spliced messenger RNA

>Gvermi6718.t1 ID=Gvermi6718.t1|Name=Gvermi6718.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1869bp|location=Sequence derived from alignment at ScGOVlb_88:2084572..2086440+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGACGACTGCATGCACTGCTGCGCTTCTCAAGTGAATGCAGTTC
ACTTCTTCCAAGCCGGGTTGCGAACAGAATCCTCTCTAGTCCAGCAATAT
TTCTGCAACCTAAACGTTACTGCCTCGCACCCCGAGAAGACATAGTTCCA
TCATTGGCAAAAGCTGTGGAAGGCGAGCGAAAAAGCGCTGCAGAGGCTCT
ACCAGTGACAATTCCCAAAACTCTTCCGAACACGAGAGAAAATCGATCCG
TGAAGCCGTCCGATCTCTACAATGCTCTTGTTCACGAAGGCGAATCCCGT
CACCTGTCAAAGATTTGGGCCGATGCGATTGCGGTTACCACAGATGGGTC
AAAAGTTCCGGAGAAGGACGATTCTAATTGGAAGAAACGCTTGGAACAAT
GTCGAATGGATGGGAATTCTGACAATGCATTGAACATTGTCACAGAAATC
AATGAGGAAGGATATTTGATATCGGCCAGAACCGCCGTCATAGTCATCGA
AACTTGTATTGCTGCCGGTGAATACGAGGGTGCCGAACATGTGCTCGCAA
TTTTGAAATCATTCCCTAATGATCACCCGACTAGGACTACTCAATCAGTA
TGCATGGCTAGGACCTTATTGGCCATGTCATTCACTTCTCGAGGATGGTA
TGAACGAGCACTTCAAGTGATAGGCTTTCCAAACGAACGATTTGTGACGG
TAGATGCGAAACTAATAGGTACTCTAAACGAATTGGGGTTAGGTCGAGAT
TCTCTTGCATGGGGAGTTCTGTTAAAGGCATTAACGAAAATTGGAAGAGC
TGAGACCGCTGTAGCCGTGGTAGATGTGGCTATGCGTCAAGGAGTAGGGA
TGACTGATTCTTTGCTTCATCTCACCATTGATTCATTACGAGTGCTCAAT
AGATGGAAGGATGCAGAATGGCTATTTACGAAAGCACTCGAGAAGGGTAT
TAAGCCGAGTGAGATGACACTTGGATCAATTTTGATGTCTTTGACGAGCA
GAGATGCCCGAACTGTAGTGGCCAAGACACGGATTGAAGAAATTGTAAAT
ATGGCGAAGCACCCATCCCCTAGGTTTATGAAAACCGCTATTATGGCTTT
GACATCTGTTGGACTAGTCGAAAAGGCCGAGAATCTGTTTCACGAGGTCG
GACAGTCCCACCCCTCTGGAGTGCCGGATGAAGAAACTTTTGGCAATTTG
ATGGCTGGATACGGAAATCATCTACAACTGATGCCTGCTGAGGTCGCAGA
TGAAGTGTTAGCAAACGGGAAATTGGAAGAGGTGAACAAGAAAGCTGATC
AGCTGTGGGGGTTATATTTGAAGCATCATAGAACACTCAAGATTGGAAGT
CTGCGACTCTCTCAAAGGAATATGATGATTGGTAACTACTTGCGAGTCAA
GATACGAAGCTACAGGATAAAGGAAGCAGTAGATATTTTAGAAGTTCTTG
TGGTTTCACGGGACATGTACCCGACATTGAATGTAGGCATCGGACATATT
TGCTCGACATTGGGTGCAATAGAGTTATGTTGTGACGTATTACAACTGGA
ACGATTAACTGAAATTATGCGACAAGGGGGAATCAAACACGACATGCGCT
CTCTCGCATTTGCCGTGGGTACCTACGTCGGGGATGGAAATTTATCAGCA
GCTCTCAAATTAGTGGAGCAGCATTTCGCAGACGTGACCGAGAATGAGAC
TGTATCCTCGCAGTTTCGAAATCACCATCCGCAACTTTTATTTAGGCGCA
TGCAAACTTTGAGAAGTGCCTTGAGAGACTCAGGTATCAAGAAACTGAAA
ACGTTGGATGATTCGTTGAGGAATTTTGAAAGAAGACATGCCATGGGAGG
AAGTTCGGCTTCCGGCTAG

protein sequence of Gvermi6718.t1

>Gvermi6718.t1 ID=Gvermi6718.t1|Name=Gvermi6718.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=623bp
MSGRLHALLRFSSECSSLLPSRVANRILSSPAIFLQPKRYCLAPREDIVP
SLAKAVEGERKSAAEALPVTIPKTLPNTRENRSVKPSDLYNALVHEGESR
HLSKIWADAIAVTTDGSKVPEKDDSNWKKRLEQCRMDGNSDNALNIVTEI
NEEGYLISARTAVIVIETCIAAGEYEGAEHVLAILKSFPNDHPTRTTQSV
CMARTLLAMSFTSRGWYERALQVIGFPNERFVTVDAKLIGTLNELGLGRD
SLAWGVLLKALTKIGRAETAVAVVDVAMRQGVGMTDSLLHLTIDSLRVLN
RWKDAEWLFTKALEKGIKPSEMTLGSILMSLTSRDARTVVAKTRIEEIVN
MAKHPSPRFMKTAIMALTSVGLVEKAENLFHEVGQSHPSGVPDEETFGNL
MAGYGNHLQLMPAEVADEVLANGKLEEVNKKADQLWGLYLKHHRTLKIGS
LRLSQRNMMIGNYLRVKIRSYRIKEAVDILEVLVVSRDMYPTLNVGIGHI
CSTLGAIELCCDVLQLERLTEIMRQGGIKHDMRSLAFAVGTYVGDGNLSA
ALKLVEQHFADVTENETVSSQFRNHHPQLLFRRMQTLRSALRDSGIKKLK
TLDDSLRNFERRHAMGGSSASG*

mRNA from alignment at ScGOVlb_88:2084572..2086440+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6718.t1 ID=Gvermi6718.t1|Name=Gvermi6718.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1869bp|location=Sequence derived from alignment at ScGOVlb_88:2084572..2086440+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGGACGACTGCATGCACTGCTGCGCTTCTCAAGTGAATGCAGTTC
ACTTCTTCCAAGCCGGGTTGCGAACAGAATCCTCTCTAGTCCAGCAATAT
TTCTGCAACCTAAACGTTACTGCCTCGCACCCCGAGAAGACATAGTTCCA
TCATTGGCAAAAGCTGTGGAAGGCGAGCGAAAAAGCGCTGCAGAGGCTCT
ACCAGTGACAATTCCCAAAACTCTTCCGAACACGAGAGAAAATCGATCCG
TGAAGCCGTCCGATCTCTACAATGCTCTTGTTCACGAAGGCGAATCCCGT
CACCTGTCAAAGATTTGGGCCGATGCGATTGCGGTTACCACAGATGGGTC
AAAAGTTCCGGAGAAGGACGATTCTAATTGGAAGAAACGCTTGGAACAAT
GTCGAATGGATGGGAATTCTGACAATGCATTGAACATTGTCACAGAAATC
AATGAGGAAGGATATTTGATATCGGCCAGAACCGCCGTCATAGTCATCGA
AACTTGTATTGCTGCCGGTGAATACGAGGGTGCCGAACATGTGCTCGCAA
TTTTGAAATCATTCCCTAATGATCACCCGACTAGGACTACTCAATCAGTA
TGCATGGCTAGGACCTTATTGGCCATGTCATTCACTTCTCGAGGATGGTA
TGAACGAGCACTTCAAGTGATAGGCTTTCCAAACGAACGATTTGTGACGG
TAGATGCGAAACTAATAGGTACTCTAAACGAATTGGGGTTAGGTCGAGAT
TCTCTTGCATGGGGAGTTCTGTTAAAGGCATTAACGAAAATTGGAAGAGC
TGAGACCGCTGTAGCCGTGGTAGATGTGGCTATGCGTCAAGGAGTAGGGA
TGACTGATTCTTTGCTTCATCTCACCATTGATTCATTACGAGTGCTCAAT
AGATGGAAGGATGCAGAATGGCTATTTACGAAAGCACTCGAGAAGGGTAT
TAAGCCGAGTGAGATGACACTTGGATCAATTTTGATGTCTTTGACGAGCA
GAGATGCCCGAACTGTAGTGGCCAAGACACGGATTGAAGAAATTGTAAAT
ATGGCGAAGCACCCATCCCCTAGGTTTATGAAAACCGCTATTATGGCTTT
GACATCTGTTGGACTAGTCGAAAAGGCCGAGAATCTGTTTCACGAGGTCG
GACAGTCCCACCCCTCTGGAGTGCCGGATGAAGAAACTTTTGGCAATTTG
ATGGCTGGATACGGAAATCATCTACAACTGATGCCTGCTGAGGTCGCAGA
TGAAGTGTTAGCAAACGGGAAATTGGAAGAGGTGAACAAGAAAGCTGATC
AGCTGTGGGGGTTATATTTGAAGCATCATAGAACACTCAAGATTGGAAGT
CTGCGACTCTCTCAAAGGAATATGATGATTGGTAACTACTTGCGAGTCAA
GATACGAAGCTACAGGATAAAGGAAGCAGTAGATATTTTAGAAGTTCTTG
TGGTTTCACGGGACATGTACCCGACATTGAATGTAGGCATCGGACATATT
TGCTCGACATTGGGTGCAATAGAGTTATGTTGTGACGTATTACAACTGGA
ACGATTAACTGAAATTATGCGACAAGGGGGAATCAAACACGACATGCGCT
CTCTCGCATTTGCCGTGGGTACCTACGTCGGGGATGGAAATTTATCAGCA
GCTCTCAAATTAGTGGAGCAGCATTTCGCAGACGTGACCGAGAATGAGAC
TGTATCCTCGCAGTTTCGAAATCACCATCCGCAACTTTTATTTAGGCGCA
TGCAAACTTTGAGAAGTGCCTTGAGAGACTCAGGTATCAAGAAACTGAAA
ACGTTGGATGATTCGTTGAGGAATTTTGAAAGAAGACATGCCATGGGAGG
AAGTTCGGCTTCCGGCTAG

Coding sequence (CDS) from alignment at ScGOVlb_88:2084572..2086440+

>Gvermi6718.t1 ID=Gvermi6718.t1|Name=Gvermi6718.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1869bp|location=Sequence derived from alignment at ScGOVlb_88:2084572..2086440+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGGACGACTGCATGCACTGCTGCGCTTCTCAAGTGAATGCAGTTC
ACTTCTTCCAAGCCGGGTTGCGAACAGAATCCTCTCTAGTCCAGCAATAT
TTCTGCAACCTAAACGTTACTGCCTCGCACCCCGAGAAGACATAGTTCCA
TCATTGGCAAAAGCTGTGGAAGGCGAGCGAAAAAGCGCTGCAGAGGCTCT
ACCAGTGACAATTCCCAAAACTCTTCCGAACACGAGAGAAAATCGATCCG
TGAAGCCGTCCGATCTCTACAATGCTCTTGTTCACGAAGGCGAATCCCGT
CACCTGTCAAAGATTTGGGCCGATGCGATTGCGGTTACCACAGATGGGTC
AAAAGTTCCGGAGAAGGACGATTCTAATTGGAAGAAACGCTTGGAACAAT
GTCGAATGGATGGGAATTCTGACAATGCATTGAACATTGTCACAGAAATC
AATGAGGAAGGATATTTGATATCGGCCAGAACCGCCGTCATAGTCATCGA
AACTTGTATTGCTGCCGGTGAATACGAGGGTGCCGAACATGTGCTCGCAA
TTTTGAAATCATTCCCTAATGATCACCCGACTAGGACTACTCAATCAGTA
TGCATGGCTAGGACCTTATTGGCCATGTCATTCACTTCTCGAGGATGGTA
TGAACGAGCACTTCAAGTGATAGGCTTTCCAAACGAACGATTTGTGACGG
TAGATGCGAAACTAATAGGTACTCTAAACGAATTGGGGTTAGGTCGAGAT
TCTCTTGCATGGGGAGTTCTGTTAAAGGCATTAACGAAAATTGGAAGAGC
TGAGACCGCTGTAGCCGTGGTAGATGTGGCTATGCGTCAAGGAGTAGGGA
TGACTGATTCTTTGCTTCATCTCACCATTGATTCATTACGAGTGCTCAAT
AGATGGAAGGATGCAGAATGGCTATTTACGAAAGCACTCGAGAAGGGTAT
TAAGCCGAGTGAGATGACACTTGGATCAATTTTGATGTCTTTGACGAGCA
GAGATGCCCGAACTGTAGTGGCCAAGACACGGATTGAAGAAATTGTAAAT
ATGGCGAAGCACCCATCCCCTAGGTTTATGAAAACCGCTATTATGGCTTT
GACATCTGTTGGACTAGTCGAAAAGGCCGAGAATCTGTTTCACGAGGTCG
GACAGTCCCACCCCTCTGGAGTGCCGGATGAAGAAACTTTTGGCAATTTG
ATGGCTGGATACGGAAATCATCTACAACTGATGCCTGCTGAGGTCGCAGA
TGAAGTGTTAGCAAACGGGAAATTGGAAGAGGTGAACAAGAAAGCTGATC
AGCTGTGGGGGTTATATTTGAAGCATCATAGAACACTCAAGATTGGAAGT
CTGCGACTCTCTCAAAGGAATATGATGATTGGTAACTACTTGCGAGTCAA
GATACGAAGCTACAGGATAAAGGAAGCAGTAGATATTTTAGAAGTTCTTG
TGGTTTCACGGGACATGTACCCGACATTGAATGTAGGCATCGGACATATT
TGCTCGACATTGGGTGCAATAGAGTTATGTTGTGACGTATTACAACTGGA
ACGATTAACTGAAATTATGCGACAAGGGGGAATCAAACACGACATGCGCT
CTCTCGCATTTGCCGTGGGTACCTACGTCGGGGATGGAAATTTATCAGCA
GCTCTCAAATTAGTGGAGCAGCATTTCGCAGACGTGACCGAGAATGAGAC
TGTATCCTCGCAGTTTCGAAATCACCATCCGCAACTTTTATTTAGGCGCA
TGCAAACTTTGAGAAGTGCCTTGAGAGACTCAGGTATCAAGAAACTGAAA
ACGTTGGATGATTCGTTGAGGAATTTTGAAAGAAGACATGCCATGGGAGG
AAGTTCGGCTTCCGGCTAG