Gvermi6347.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6347.t1
Unique NameGvermi6347.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length189
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:230535..231101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704023.1
PFAMsThioredoxin
Max annot lvl2759|Eukaryota
Evalue7.06e-38
EggNOG OGsCOG0526@1|root,KOG1672@2759|Eukaryota
Descriptionqueuosine biosynthetic process
COG categoryCO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6347Gvermi6347Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 230535..231101 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6347.t1.stop1Gvermi6347.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 230535..230537 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6347.t1.CDS1Gvermi6347.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 230535..231101 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6347.t1.exon1Gvermi6347.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 230535..231101 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6347.t1.start1Gvermi6347.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 231099..231101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6347.t1Gvermi6347.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 230535..231101 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6347.t1 ID=Gvermi6347.t1|Name=Gvermi6347.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=189bp
MAQVQKLVENAVRNAVEDIEHRLDSEIDRLNNLEDDDLEAIRRKRLAEMK
KDAEEKAMWRRNGHGTVHRISEKEFFTRAKESKRMVSIVFRPGSNRYAED
LLEHITKVAQHHLETLFTSMDAEKAPFLCERLKIRVLPSIVLVKDSEIDQ
VLLGLDHMTSTGKFTTTGIEKRLHSLGMLTNTNIADDE*
back to top

spliced messenger RNA

>Gvermi6347.t1 ID=Gvermi6347.t1|Name=Gvermi6347.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=567bp|location=Sequence derived from alignment at ScGOVlb_88:230535..231101- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCAGGTACAGAAACTAGTGGAAAACGCGGTAAGGAATGCTGTTGA
AGATATAGAGCATCGACTGGATTCGGAAATAGATCGCCTTAATAATTTAG
AAGACGATGATTTGGAAGCTATCCGGCGAAAGCGCCTAGCGGAGATGAAG
AAAGACGCCGAAGAAAAGGCTATGTGGCGAAGAAATGGCCATGGTACAGT
CCATCGAATCAGTGAAAAAGAATTCTTCACGCGGGCAAAAGAATCGAAGC
GCATGGTCTCCATCGTGTTCAGGCCGGGCTCGAACAGATACGCTGAAGAT
TTGTTGGAGCACATTACCAAGGTGGCCCAGCACCACCTGGAGACGCTGTT
TACTTCAATGGACGCGGAGAAAGCCCCGTTCTTGTGCGAAAGGTTGAAAA
TTCGTGTCCTGCCTTCGATAGTACTTGTGAAAGATTCTGAAATTGACCAG
GTGCTACTGGGTCTAGACCACATGACCAGCACCGGAAAGTTCACAACGAC
TGGCATTGAGAAGCGACTACACTCGTTAGGTATGCTGACCAACACAAACA
TTGCAGATGATGAGTGA
back to top

protein sequence of Gvermi6347.t1

>Gvermi6347.t1 ID=Gvermi6347.t1|Name=Gvermi6347.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=189bp
MAQVQKLVENAVRNAVEDIEHRLDSEIDRLNNLEDDDLEAIRRKRLAEMK
KDAEEKAMWRRNGHGTVHRISEKEFFTRAKESKRMVSIVFRPGSNRYAED
LLEHITKVAQHHLETLFTSMDAEKAPFLCERLKIRVLPSIVLVKDSEIDQ
VLLGLDHMTSTGKFTTTGIEKRLHSLGMLTNTNIADDE*
back to top

mRNA from alignment at ScGOVlb_88:230535..231101-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6347.t1 ID=Gvermi6347.t1|Name=Gvermi6347.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=567bp|location=Sequence derived from alignment at ScGOVlb_88:230535..231101- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCAGGTACAGAAACTAGTGGAAAACGCGGTAAGGAATGCTGTTGA
AGATATAGAGCATCGACTGGATTCGGAAATAGATCGCCTTAATAATTTAG
AAGACGATGATTTGGAAGCTATCCGGCGAAAGCGCCTAGCGGAGATGAAG
AAAGACGCCGAAGAAAAGGCTATGTGGCGAAGAAATGGCCATGGTACAGT
CCATCGAATCAGTGAAAAAGAATTCTTCACGCGGGCAAAAGAATCGAAGC
GCATGGTCTCCATCGTGTTCAGGCCGGGCTCGAACAGATACGCTGAAGAT
TTGTTGGAGCACATTACCAAGGTGGCCCAGCACCACCTGGAGACGCTGTT
TACTTCAATGGACGCGGAGAAAGCCCCGTTCTTGTGCGAAAGGTTGAAAA
TTCGTGTCCTGCCTTCGATAGTACTTGTGAAAGATTCTGAAATTGACCAG
GTGCTACTGGGTCTAGACCACATGACCAGCACCGGAAAGTTCACAACGAC
TGGCATTGAGAAGCGACTACACTCGTTAGGTATGCTGACCAACACAAACA
TTGCAGATGATGAGTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_88:230535..231101-

>Gvermi6347.t1 ID=Gvermi6347.t1|Name=Gvermi6347.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=567bp|location=Sequence derived from alignment at ScGOVlb_88:230535..231101- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCAGGTACAGAAACTAGTGGAAAACGCGGTAAGGAATGCTGTTGA
AGATATAGAGCATCGACTGGATTCGGAAATAGATCGCCTTAATAATTTAG
AAGACGATGATTTGGAAGCTATCCGGCGAAAGCGCCTAGCGGAGATGAAG
AAAGACGCCGAAGAAAAGGCTATGTGGCGAAGAAATGGCCATGGTACAGT
CCATCGAATCAGTGAAAAAGAATTCTTCACGCGGGCAAAAGAATCGAAGC
GCATGGTCTCCATCGTGTTCAGGCCGGGCTCGAACAGATACGCTGAAGAT
TTGTTGGAGCACATTACCAAGGTGGCCCAGCACCACCTGGAGACGCTGTT
TACTTCAATGGACGCGGAGAAAGCCCCGTTCTTGTGCGAAAGGTTGAAAA
TTCGTGTCCTGCCTTCGATAGTACTTGTGAAAGATTCTGAAATTGACCAG
GTGCTACTGGGTCTAGACCACATGACCAGCACCGGAAAGTTCACAACGAC
TGGCATTGAGAAGCGACTACACTCGTTAGGTATGCTGACCAACACAAACA
TTGCAGATGATGAGTGA
back to top