Gvermi6450.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6450.t1
Unique NameGvermi6450.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length409
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:786393..787619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMP085CT
PFAMsACT_6,HAD
Max annot lvl2759|Eukaryota
Evalue6.59e-65
EggNOG OGsCOG0560@1|root,KOG1615@2759|Eukaryota
Descriptionphosphoserine phosphatase activity
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6450Gvermi6450Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 786393..787619 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6450.t1.start1Gvermi6450.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 786393..786395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6450.t1.CDS1Gvermi6450.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 786393..787619 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6450.t1.exon1Gvermi6450.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 786393..787619 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6450.t1.stop1Gvermi6450.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 787617..787619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6450.t1Gvermi6450.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 786393..787619 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6450.t1 ID=Gvermi6450.t1|Name=Gvermi6450.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=409bp
MGNLQNVIVTLCGKQSPSALASVMHVLSTEHSELIDFGQLVVRNRFIATA
LISAQGAHDTVKEILFRAHKANIQVHFNVARAPTHLSTSSLSSLADVKDQ
YILNVFSPRLIPPKLLAKITQLLLDSDAKIIAINRLTDEGDQFMCLEFTT
TVADERRIPALQHQLFELGRTEFQCDIALQKANVSRKAKRMVVFDLSWTL
VQCDSINVLLHAAGIDVAPEEEQKFRSAQITGLDWVRFRVQLLKGLHAHT
VNTKALQNLVYTDGALELCKGLRRLGCKLAIVSSGSKDIAMAAKEALGID
FVFGNIVEIDSAGRFTGTVKEPVVDAQRKAELVTMLAMQERIDPEQVIAV
GDGPVSAKMLETVGLGIAFDQPDAVDSVRSGRIGSKSLASVLYLLGVSGH
DFRTVTAS*
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spliced messenger RNA

>Gvermi6450.t1 ID=Gvermi6450.t1|Name=Gvermi6450.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at ScGOVlb_88:786393..787619+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTAACCTCCAGAACGTTATCGTCACGCTCTGCGGCAAGCAGTCTCC
GTCAGCGCTTGCCTCCGTCATGCACGTTCTCTCCACCGAGCACTCCGAGC
TCATCGACTTCGGACAGCTCGTCGTGCGCAATCGCTTCATCGCCACTGCC
CTCATTTCCGCCCAAGGCGCGCACGACACCGTCAAGGAAATCCTGTTTCG
CGCTCACAAGGCCAATATCCAGGTTCACTTCAACGTCGCACGCGCTCCCA
CCCATCTCTCAACCTCTTCCCTGTCGTCCCTTGCCGACGTCAAAGACCAG
TACATCCTCAACGTGTTCTCACCACGCCTCATACCCCCAAAGCTCCTGGC
CAAGATAACCCAGCTTTTGCTTGACAGTGACGCCAAAATCATTGCCATCA
ACCGTCTCACCGATGAGGGCGATCAGTTCATGTGTTTGGAATTCACCACC
ACTGTGGCGGATGAGCGACGGATACCGGCGCTTCAGCACCAGCTTTTCGA
GCTCGGTCGAACCGAATTCCAGTGCGACATTGCGCTGCAGAAGGCAAACG
TCTCGCGCAAGGCCAAGAGAATGGTCGTTTTCGACCTCAGTTGGACGCTG
GTTCAATGTGATTCCATCAATGTGTTGCTCCACGCCGCAGGCATTGACGT
AGCCCCCGAGGAGGAGCAAAAATTCCGCAGTGCGCAAATCACTGGCCTTG
ACTGGGTACGTTTCAGAGTGCAGCTCTTGAAAGGATTGCATGCTCACACC
GTCAATACCAAGGCGCTGCAAAACTTAGTTTACACAGATGGCGCTCTAGA
GCTGTGCAAAGGCCTTCGGCGTTTGGGATGCAAACTCGCTATAGTATCTT
CCGGCTCGAAGGACATTGCTATGGCTGCTAAAGAAGCTCTTGGCATTGAT
TTTGTATTTGGAAACATTGTCGAAATCGACTCTGCGGGACGATTTACAGG
AACGGTCAAAGAACCTGTGGTCGATGCTCAACGGAAGGCAGAGCTTGTTA
CTATGTTGGCCATGCAAGAACGTATTGACCCTGAGCAAGTCATTGCTGTC
GGGGATGGTCCTGTCAGTGCAAAGATGCTTGAAACTGTTGGATTGGGTAT
CGCTTTTGATCAACCTGATGCAGTGGACTCGGTTCGTAGCGGACGAATTG
GCAGCAAGAGCCTGGCAAGTGTTCTGTATCTGTTGGGTGTTTCGGGCCAT
GATTTCCGCACAGTTACGGCTAGCTAA
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protein sequence of Gvermi6450.t1

>Gvermi6450.t1 ID=Gvermi6450.t1|Name=Gvermi6450.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=409bp
MGNLQNVIVTLCGKQSPSALASVMHVLSTEHSELIDFGQLVVRNRFIATA
LISAQGAHDTVKEILFRAHKANIQVHFNVARAPTHLSTSSLSSLADVKDQ
YILNVFSPRLIPPKLLAKITQLLLDSDAKIIAINRLTDEGDQFMCLEFTT
TVADERRIPALQHQLFELGRTEFQCDIALQKANVSRKAKRMVVFDLSWTL
VQCDSINVLLHAAGIDVAPEEEQKFRSAQITGLDWVRFRVQLLKGLHAHT
VNTKALQNLVYTDGALELCKGLRRLGCKLAIVSSGSKDIAMAAKEALGID
FVFGNIVEIDSAGRFTGTVKEPVVDAQRKAELVTMLAMQERIDPEQVIAV
GDGPVSAKMLETVGLGIAFDQPDAVDSVRSGRIGSKSLASVLYLLGVSGH
DFRTVTAS*
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mRNA from alignment at ScGOVlb_88:786393..787619+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6450.t1 ID=Gvermi6450.t1|Name=Gvermi6450.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at ScGOVlb_88:786393..787619+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTAACCTCCAGAACGTTATCGTCACGCTCTGCGGCAAGCAGTCTCC
GTCAGCGCTTGCCTCCGTCATGCACGTTCTCTCCACCGAGCACTCCGAGC
TCATCGACTTCGGACAGCTCGTCGTGCGCAATCGCTTCATCGCCACTGCC
CTCATTTCCGCCCAAGGCGCGCACGACACCGTCAAGGAAATCCTGTTTCG
CGCTCACAAGGCCAATATCCAGGTTCACTTCAACGTCGCACGCGCTCCCA
CCCATCTCTCAACCTCTTCCCTGTCGTCCCTTGCCGACGTCAAAGACCAG
TACATCCTCAACGTGTTCTCACCACGCCTCATACCCCCAAAGCTCCTGGC
CAAGATAACCCAGCTTTTGCTTGACAGTGACGCCAAAATCATTGCCATCA
ACCGTCTCACCGATGAGGGCGATCAGTTCATGTGTTTGGAATTCACCACC
ACTGTGGCGGATGAGCGACGGATACCGGCGCTTCAGCACCAGCTTTTCGA
GCTCGGTCGAACCGAATTCCAGTGCGACATTGCGCTGCAGAAGGCAAACG
TCTCGCGCAAGGCCAAGAGAATGGTCGTTTTCGACCTCAGTTGGACGCTG
GTTCAATGTGATTCCATCAATGTGTTGCTCCACGCCGCAGGCATTGACGT
AGCCCCCGAGGAGGAGCAAAAATTCCGCAGTGCGCAAATCACTGGCCTTG
ACTGGGTACGTTTCAGAGTGCAGCTCTTGAAAGGATTGCATGCTCACACC
GTCAATACCAAGGCGCTGCAAAACTTAGTTTACACAGATGGCGCTCTAGA
GCTGTGCAAAGGCCTTCGGCGTTTGGGATGCAAACTCGCTATAGTATCTT
CCGGCTCGAAGGACATTGCTATGGCTGCTAAAGAAGCTCTTGGCATTGAT
TTTGTATTTGGAAACATTGTCGAAATCGACTCTGCGGGACGATTTACAGG
AACGGTCAAAGAACCTGTGGTCGATGCTCAACGGAAGGCAGAGCTTGTTA
CTATGTTGGCCATGCAAGAACGTATTGACCCTGAGCAAGTCATTGCTGTC
GGGGATGGTCCTGTCAGTGCAAAGATGCTTGAAACTGTTGGATTGGGTAT
CGCTTTTGATCAACCTGATGCAGTGGACTCGGTTCGTAGCGGACGAATTG
GCAGCAAGAGCCTGGCAAGTGTTCTGTATCTGTTGGGTGTTTCGGGCCAT
GATTTCCGCACAGTTACGGCTAGCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:786393..787619+

>Gvermi6450.t1 ID=Gvermi6450.t1|Name=Gvermi6450.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1227bp|location=Sequence derived from alignment at ScGOVlb_88:786393..787619+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTAACCTCCAGAACGTTATCGTCACGCTCTGCGGCAAGCAGTCTCC
GTCAGCGCTTGCCTCCGTCATGCACGTTCTCTCCACCGAGCACTCCGAGC
TCATCGACTTCGGACAGCTCGTCGTGCGCAATCGCTTCATCGCCACTGCC
CTCATTTCCGCCCAAGGCGCGCACGACACCGTCAAGGAAATCCTGTTTCG
CGCTCACAAGGCCAATATCCAGGTTCACTTCAACGTCGCACGCGCTCCCA
CCCATCTCTCAACCTCTTCCCTGTCGTCCCTTGCCGACGTCAAAGACCAG
TACATCCTCAACGTGTTCTCACCACGCCTCATACCCCCAAAGCTCCTGGC
CAAGATAACCCAGCTTTTGCTTGACAGTGACGCCAAAATCATTGCCATCA
ACCGTCTCACCGATGAGGGCGATCAGTTCATGTGTTTGGAATTCACCACC
ACTGTGGCGGATGAGCGACGGATACCGGCGCTTCAGCACCAGCTTTTCGA
GCTCGGTCGAACCGAATTCCAGTGCGACATTGCGCTGCAGAAGGCAAACG
TCTCGCGCAAGGCCAAGAGAATGGTCGTTTTCGACCTCAGTTGGACGCTG
GTTCAATGTGATTCCATCAATGTGTTGCTCCACGCCGCAGGCATTGACGT
AGCCCCCGAGGAGGAGCAAAAATTCCGCAGTGCGCAAATCACTGGCCTTG
ACTGGGTACGTTTCAGAGTGCAGCTCTTGAAAGGATTGCATGCTCACACC
GTCAATACCAAGGCGCTGCAAAACTTAGTTTACACAGATGGCGCTCTAGA
GCTGTGCAAAGGCCTTCGGCGTTTGGGATGCAAACTCGCTATAGTATCTT
CCGGCTCGAAGGACATTGCTATGGCTGCTAAAGAAGCTCTTGGCATTGAT
TTTGTATTTGGAAACATTGTCGAAATCGACTCTGCGGGACGATTTACAGG
AACGGTCAAAGAACCTGTGGTCGATGCTCAACGGAAGGCAGAGCTTGTTA
CTATGTTGGCCATGCAAGAACGTATTGACCCTGAGCAAGTCATTGCTGTC
GGGGATGGTCCTGTCAGTGCAAAGATGCTTGAAACTGTTGGATTGGGTAT
CGCTTTTGATCAACCTGATGCAGTGGACTCGGTTCGTAGCGGACGAATTG
GCAGCAAGAGCCTGGCAAGTGTTCTGTATCTGTTGGGTGTTTCGGGCCAT
GATTTCCGCACAGTTACGGCTAGCTAA
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