Gvermi6558.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6558.t1
Unique Name	Gvermi6558.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	594

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:1326416..1328197 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708129.1
Preferred name	CPN60A
PFAMs	Cpn60_TCP1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04077
KEGG Pathway	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152
GOs	GO:0000003,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0006457,GO:0006458,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010154,GO:0016020,GO:0016043,GO:0022414,GO:0022626,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044183,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048046,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0051082,GO:0061077,GO:0061458,GO:0071840,GO:1990904
Evalue	6.34e-247
EggNOG OGs	COG0459@1\|root,KOG0356@2759\|Eukaryota
Description	protein refolding
COG category	O
BRITE	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6558	Gvermi6558	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 1326416..1328197 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6558.t1.stop1	Gvermi6558.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 1326416..1326418 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6558.t1.CDS1	Gvermi6558.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 1326416..1328197 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6558.t1.exon1	Gvermi6558.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 1326416..1328197 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6558.t1.start1	Gvermi6558.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 1328195..1328197 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6558.t1	Gvermi6558.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 1326416..1328197 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:1326416..1328197-
coding sequence from alignment at ScGOVlb_88:1326416..1328197-

mRNA sequence

>Gvermi6558.t1 ID=Gvermi6558.t1|Name=Gvermi6558.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=594bp
MNVPSAFVSALPLASSSFASSKRSVSHRSRNVVRVSAPRNVPAVSMAAKD
IAFGEKSRRALVEGVDAVANAVKVTLGPKGRNVVLGRGNYSAPLSVNDGV
TVAKEVSLEDPMANTGARLLQEVASKTDSKAGDGTTTSTVLCQEIVHQGI
KAVGSGRNPIALKRGIDKTVKFLVKELQNHARPCKGIDDIRAVATISSGN
DEEIGEIIASAYERIGETGSTSVEESQSLGNSVEFTEGMELDRGFISPYF
VKNQERQVAEMSRPRVLITDQKISAVKDLVNLLENFVKTKEPLVIVCDDL
AGEALSTLVVNKMRGVLDVVAIKSPGFGDRRKQYLEDISIVTGGSFICSD
LGMTLEDVKPEDLGTAERIIVGKESTTIISTGEFEEAVKERIEQINRELE
TTDSQFDTEKLEERRARLGGGVARILIGAATETELKDKKLRCEDALNATK
AAMEQGVLPGGGAALAHLSLKIPEFAKTLPNEDEQVGAAIIKAAITSPLK
QICANAGVEGEVVLEKVFELKDFGSGYNAATGEYGNLLESGVLDPTKVTC
WALENSASVAGLILTTECLVVEIPEKKPIEGDGMGDLPGEQYY*

spliced messenger RNA

>Gvermi6558.t1 ID=Gvermi6558.t1|Name=Gvermi6558.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1782bp|location=Sequence derived from alignment at ScGOVlb_88:1326416..1328197- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGTTCCTTCGGCTTTTGTTTCCGCTCTGCCGCTTGCCTCCTCGTC
CTTTGCGTCCTCGAAGCGCTCCGTCTCGCATCGCTCTCGAAATGTCGTAC
GTGTTTCGGCTCCGCGCAATGTCCCTGCCGTGTCCATGGCTGCCAAAGAC
ATTGCCTTCGGAGAAAAATCTCGAAGGGCACTGGTCGAAGGTGTGGATGC
CGTGGCAAATGCCGTTAAGGTTACGCTAGGCCCCAAGGGCCGAAACGTTG
TCTTGGGCCGCGGCAACTACTCCGCCCCGCTCAGTGTCAACGATGGTGTC
ACCGTGGCGAAGGAAGTCTCTCTGGAAGATCCTATGGCTAACACGGGCGC
GCGCTTGTTGCAGGAGGTTGCTTCGAAGACTGACTCAAAGGCTGGTGACG
GAACCACCACCTCCACCGTGTTGTGCCAAGAAATAGTCCACCAGGGCATT
AAAGCTGTTGGTAGCGGACGCAATCCCATCGCATTGAAAAGAGGTATTGA
CAAAACTGTCAAGTTCTTAGTCAAAGAGCTTCAGAATCATGCCAGACCCT
GCAAGGGCATTGACGACATTCGTGCTGTCGCTACCATTTCCTCTGGAAAT
GATGAGGAAATTGGTGAGATTATTGCTTCAGCCTATGAGAGGATCGGTGA
GACGGGATCCACATCTGTTGAGGAATCACAAAGTCTTGGCAACTCAGTCG
AGTTCACTGAGGGCATGGAGCTTGACCGAGGTTTCATTTCTCCCTATTTC
GTCAAGAACCAAGAGCGTCAGGTGGCCGAGATGAGCAGACCACGAGTGCT
TATAACCGACCAGAAGATCAGCGCTGTAAAGGACCTTGTGAACCTACTAG
AAAATTTTGTCAAGACAAAGGAACCTTTAGTAATTGTGTGCGACGACCTG
GCTGGTGAAGCGTTGTCTACTCTGGTGGTCAACAAAATGAGAGGTGTGTT
GGACGTTGTGGCCATCAAATCACCCGGCTTTGGTGACCGCAGAAAGCAGT
ATTTGGAAGACATATCTATTGTTACCGGTGGTTCCTTCATATGTTCTGAT
CTCGGTATGACTCTTGAGGATGTCAAGCCAGAAGATCTCGGAACCGCTGA
ACGCATTATTGTCGGAAAAGAGTCTACCACCATTATTTCGACTGGCGAAT
TCGAGGAAGCCGTCAAGGAACGAATCGAGCAGATCAATCGCGAGTTGGAG
ACGACCGATTCTCAGTTTGACACCGAAAAACTGGAAGAACGCCGTGCACG
GCTTGGCGGAGGGGTGGCCCGGATTCTGATTGGAGCCGCGACCGAAACTG
AACTGAAAGATAAGAAGCTTCGCTGTGAAGACGCTCTAAATGCGACAAAG
GCTGCAATGGAGCAGGGAGTTCTACCGGGTGGTGGTGCGGCCTTGGCGCA
CTTATCATTGAAAATACCGGAATTTGCGAAGACTTTGCCAAACGAAGACG
AGCAGGTTGGTGCCGCTATTATCAAGGCTGCCATTACTTCCCCGCTGAAA
CAGATCTGCGCGAACGCTGGTGTCGAGGGTGAAGTGGTTCTTGAGAAGGT
ATTCGAGCTGAAAGACTTCGGAAGCGGTTACAACGCGGCTACTGGTGAAT
ACGGAAATCTGTTGGAATCGGGTGTACTTGACCCGACCAAGGTCACGTGC
TGGGCTCTCGAGAACTCTGCGAGTGTAGCGGGCCTGATCCTGACCACAGA
ATGTTTGGTTGTAGAAATCCCAGAGAAGAAGCCGATAGAAGGCGACGGAA
TGGGTGACTTACCCGGAGAGCAATACTATTGA

protein sequence of Gvermi6558.t1

>Gvermi6558.t1 ID=Gvermi6558.t1|Name=Gvermi6558.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=594bp
MNVPSAFVSALPLASSSFASSKRSVSHRSRNVVRVSAPRNVPAVSMAAKD
IAFGEKSRRALVEGVDAVANAVKVTLGPKGRNVVLGRGNYSAPLSVNDGV
TVAKEVSLEDPMANTGARLLQEVASKTDSKAGDGTTTSTVLCQEIVHQGI
KAVGSGRNPIALKRGIDKTVKFLVKELQNHARPCKGIDDIRAVATISSGN
DEEIGEIIASAYERIGETGSTSVEESQSLGNSVEFTEGMELDRGFISPYF
VKNQERQVAEMSRPRVLITDQKISAVKDLVNLLENFVKTKEPLVIVCDDL
AGEALSTLVVNKMRGVLDVVAIKSPGFGDRRKQYLEDISIVTGGSFICSD
LGMTLEDVKPEDLGTAERIIVGKESTTIISTGEFEEAVKERIEQINRELE
TTDSQFDTEKLEERRARLGGGVARILIGAATETELKDKKLRCEDALNATK
AAMEQGVLPGGGAALAHLSLKIPEFAKTLPNEDEQVGAAIIKAAITSPLK
QICANAGVEGEVVLEKVFELKDFGSGYNAATGEYGNLLESGVLDPTKVTC
WALENSASVAGLILTTECLVVEIPEKKPIEGDGMGDLPGEQYY*

mRNA from alignment at ScGOVlb_88:1326416..1328197-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6558.t1 ID=Gvermi6558.t1|Name=Gvermi6558.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1782bp|location=Sequence derived from alignment at ScGOVlb_88:1326416..1328197- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATGTTCCTTCGGCTTTTGTTTCCGCTCTGCCGCTTGCCTCCTCGTC
CTTTGCGTCCTCGAAGCGCTCCGTCTCGCATCGCTCTCGAAATGTCGTAC
GTGTTTCGGCTCCGCGCAATGTCCCTGCCGTGTCCATGGCTGCCAAAGAC
ATTGCCTTCGGAGAAAAATCTCGAAGGGCACTGGTCGAAGGTGTGGATGC
CGTGGCAAATGCCGTTAAGGTTACGCTAGGCCCCAAGGGCCGAAACGTTG
TCTTGGGCCGCGGCAACTACTCCGCCCCGCTCAGTGTCAACGATGGTGTC
ACCGTGGCGAAGGAAGTCTCTCTGGAAGATCCTATGGCTAACACGGGCGC
GCGCTTGTTGCAGGAGGTTGCTTCGAAGACTGACTCAAAGGCTGGTGACG
GAACCACCACCTCCACCGTGTTGTGCCAAGAAATAGTCCACCAGGGCATT
AAAGCTGTTGGTAGCGGACGCAATCCCATCGCATTGAAAAGAGGTATTGA
CAAAACTGTCAAGTTCTTAGTCAAAGAGCTTCAGAATCATGCCAGACCCT
GCAAGGGCATTGACGACATTCGTGCTGTCGCTACCATTTCCTCTGGAAAT
GATGAGGAAATTGGTGAGATTATTGCTTCAGCCTATGAGAGGATCGGTGA
GACGGGATCCACATCTGTTGAGGAATCACAAAGTCTTGGCAACTCAGTCG
AGTTCACTGAGGGCATGGAGCTTGACCGAGGTTTCATTTCTCCCTATTTC
GTCAAGAACCAAGAGCGTCAGGTGGCCGAGATGAGCAGACCACGAGTGCT
TATAACCGACCAGAAGATCAGCGCTGTAAAGGACCTTGTGAACCTACTAG
AAAATTTTGTCAAGACAAAGGAACCTTTAGTAATTGTGTGCGACGACCTG
GCTGGTGAAGCGTTGTCTACTCTGGTGGTCAACAAAATGAGAGGTGTGTT
GGACGTTGTGGCCATCAAATCACCCGGCTTTGGTGACCGCAGAAAGCAGT
ATTTGGAAGACATATCTATTGTTACCGGTGGTTCCTTCATATGTTCTGAT
CTCGGTATGACTCTTGAGGATGTCAAGCCAGAAGATCTCGGAACCGCTGA
ACGCATTATTGTCGGAAAAGAGTCTACCACCATTATTTCGACTGGCGAAT
TCGAGGAAGCCGTCAAGGAACGAATCGAGCAGATCAATCGCGAGTTGGAG
ACGACCGATTCTCAGTTTGACACCGAAAAACTGGAAGAACGCCGTGCACG
GCTTGGCGGAGGGGTGGCCCGGATTCTGATTGGAGCCGCGACCGAAACTG
AACTGAAAGATAAGAAGCTTCGCTGTGAAGACGCTCTAAATGCGACAAAG
GCTGCAATGGAGCAGGGAGTTCTACCGGGTGGTGGTGCGGCCTTGGCGCA
CTTATCATTGAAAATACCGGAATTTGCGAAGACTTTGCCAAACGAAGACG
AGCAGGTTGGTGCCGCTATTATCAAGGCTGCCATTACTTCCCCGCTGAAA
CAGATCTGCGCGAACGCTGGTGTCGAGGGTGAAGTGGTTCTTGAGAAGGT
ATTCGAGCTGAAAGACTTCGGAAGCGGTTACAACGCGGCTACTGGTGAAT
ACGGAAATCTGTTGGAATCGGGTGTACTTGACCCGACCAAGGTCACGTGC
TGGGCTCTCGAGAACTCTGCGAGTGTAGCGGGCCTGATCCTGACCACAGA
ATGTTTGGTTGTAGAAATCCCAGAGAAGAAGCCGATAGAAGGCGACGGAA
TGGGTGACTTACCCGGAGAGCAATACTATTGA

Coding sequence (CDS) from alignment at ScGOVlb_88:1326416..1328197-

>Gvermi6558.t1 ID=Gvermi6558.t1|Name=Gvermi6558.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1782bp|location=Sequence derived from alignment at ScGOVlb_88:1326416..1328197- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATGTTCCTTCGGCTTTTGTTTCCGCTCTGCCGCTTGCCTCCTCGTC
CTTTGCGTCCTCGAAGCGCTCCGTCTCGCATCGCTCTCGAAATGTCGTAC
GTGTTTCGGCTCCGCGCAATGTCCCTGCCGTGTCCATGGCTGCCAAAGAC
ATTGCCTTCGGAGAAAAATCTCGAAGGGCACTGGTCGAAGGTGTGGATGC
CGTGGCAAATGCCGTTAAGGTTACGCTAGGCCCCAAGGGCCGAAACGTTG
TCTTGGGCCGCGGCAACTACTCCGCCCCGCTCAGTGTCAACGATGGTGTC
ACCGTGGCGAAGGAAGTCTCTCTGGAAGATCCTATGGCTAACACGGGCGC
GCGCTTGTTGCAGGAGGTTGCTTCGAAGACTGACTCAAAGGCTGGTGACG
GAACCACCACCTCCACCGTGTTGTGCCAAGAAATAGTCCACCAGGGCATT
AAAGCTGTTGGTAGCGGACGCAATCCCATCGCATTGAAAAGAGGTATTGA
CAAAACTGTCAAGTTCTTAGTCAAAGAGCTTCAGAATCATGCCAGACCCT
GCAAGGGCATTGACGACATTCGTGCTGTCGCTACCATTTCCTCTGGAAAT
GATGAGGAAATTGGTGAGATTATTGCTTCAGCCTATGAGAGGATCGGTGA
GACGGGATCCACATCTGTTGAGGAATCACAAAGTCTTGGCAACTCAGTCG
AGTTCACTGAGGGCATGGAGCTTGACCGAGGTTTCATTTCTCCCTATTTC
GTCAAGAACCAAGAGCGTCAGGTGGCCGAGATGAGCAGACCACGAGTGCT
TATAACCGACCAGAAGATCAGCGCTGTAAAGGACCTTGTGAACCTACTAG
AAAATTTTGTCAAGACAAAGGAACCTTTAGTAATTGTGTGCGACGACCTG
GCTGGTGAAGCGTTGTCTACTCTGGTGGTCAACAAAATGAGAGGTGTGTT
GGACGTTGTGGCCATCAAATCACCCGGCTTTGGTGACCGCAGAAAGCAGT
ATTTGGAAGACATATCTATTGTTACCGGTGGTTCCTTCATATGTTCTGAT
CTCGGTATGACTCTTGAGGATGTCAAGCCAGAAGATCTCGGAACCGCTGA
ACGCATTATTGTCGGAAAAGAGTCTACCACCATTATTTCGACTGGCGAAT
TCGAGGAAGCCGTCAAGGAACGAATCGAGCAGATCAATCGCGAGTTGGAG
ACGACCGATTCTCAGTTTGACACCGAAAAACTGGAAGAACGCCGTGCACG
GCTTGGCGGAGGGGTGGCCCGGATTCTGATTGGAGCCGCGACCGAAACTG
AACTGAAAGATAAGAAGCTTCGCTGTGAAGACGCTCTAAATGCGACAAAG
GCTGCAATGGAGCAGGGAGTTCTACCGGGTGGTGGTGCGGCCTTGGCGCA
CTTATCATTGAAAATACCGGAATTTGCGAAGACTTTGCCAAACGAAGACG
AGCAGGTTGGTGCCGCTATTATCAAGGCTGCCATTACTTCCCCGCTGAAA
CAGATCTGCGCGAACGCTGGTGTCGAGGGTGAAGTGGTTCTTGAGAAGGT
ATTCGAGCTGAAAGACTTCGGAAGCGGTTACAACGCGGCTACTGGTGAAT
ACGGAAATCTGTTGGAATCGGGTGTACTTGACCCGACCAAGGTCACGTGC
TGGGCTCTCGAGAACTCTGCGAGTGTAGCGGGCCTGATCCTGACCACAGA
ATGTTTGGTTGTAGAAATCCCAGAGAAGAAGCCGATAGAAGGCGACGGAA
TGGGTGACTTACCCGGAGAGCAATACTATTGA