Gvermi8710.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8710.t1
Unique NameGvermi8710.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length17
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_7810contigScGOVlb_7810:65..197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8710Gvermi8710Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_7810 65..197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8710.t1Gvermi8710.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_7810 65..197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8710.t1.CDS1Gvermi8710.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_7810 65..104 +
Gvermi8710.t1.CDS2Gvermi8710.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_7810 187..197 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8710.t1.exon1Gvermi8710.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_7810 65..104 +
Gvermi8710.t1.exon2Gvermi8710.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_7810 187..197 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8710.t1.intron1Gvermi8710.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_7810 105..186 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8710.t1.stop1Gvermi8710.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_7810 195..197 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8710.t1 ID=Gvermi8710.t1|Name=Gvermi8710.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=17bp
SQYASRKPSIPRNLST*
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spliced messenger RNA

>Gvermi8710.t1 ID=Gvermi8710.t1|Name=Gvermi8710.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=51bp|location=Sequence derived from alignment at ScGOVlb_7810:65..197+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TCTCAGTATGCCTCCCGCAAACCTTCGATCCCGCGAAACCTTTCAACGTA
A
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protein sequence of Gvermi8710.t1

>Gvermi8710.t1 ID=Gvermi8710.t1|Name=Gvermi8710.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=17bp
SQYASRKPSIPRNLST*
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mRNA from alignment at ScGOVlb_7810:65..197+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8710.t1 ID=Gvermi8710.t1|Name=Gvermi8710.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=133bp|location=Sequence derived from alignment at ScGOVlb_7810:65..197+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TCTCAGTATGCCTCCCGCAAACCTTCGATCCCGCGAAACCGTAAGTCACC
CTCCATCCTACCCTTCTCTCCCTCGCCACCGCTGTCTTTCTCATTTTCTC
ACATCCCTTTCTCTCCGTATAGTTTCAACGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_7810:65..197+

>Gvermi8710.t1 ID=Gvermi8710.t1|Name=Gvermi8710.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=51bp|location=Sequence derived from alignment at ScGOVlb_7810:65..197+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TCTCAGTATGCCTCCCGCAAACCTTCGATCCCGCGAAACCTTTCAACGTA
A
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