Gvermi5720.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi5720.t1
Unique Name	Gvermi5720.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	518

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_776	contig	ScGOVlb_776:1261816..1263369 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S15_447V6.1
Preferred name	NOP56
PFAMs	NOP5NT,Nop
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14564
KEGG Pathway	ko03008,map03008
Evalue	8.83e-183
EggNOG OGs	COG1498@1\|root,KOG2573@2759\|Eukaryota,37JCN@33090\|Viridiplantae,3GGSS@35493\|Streptophyta
Description	Nucleolar protein
COG category	AJ
BRITE	ko00000,ko00001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi5720	Gvermi5720	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_776 1261816..1263369 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5720.t1.start1	Gvermi5720.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_776 1261816..1261818 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5720.t1.CDS1	Gvermi5720.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_776 1261816..1263369 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5720.t1.exon1	Gvermi5720.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_776 1261816..1263369 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5720.t1.stop1	Gvermi5720.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_776 1263367..1263369 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5720.t1	Gvermi5720.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_776 1261816..1263369 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_776:1261816..1263369+
coding sequence from alignment at ScGOVlb_776:1261816..1263369+

mRNA sequence

>Gvermi5720.t1 ID=Gvermi5720.t1|Name=Gvermi5720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=518bp
MNLFLLSESALGYALFQVVEHDVIASQVDSMQAAIAEYPRFAKMVKLKAF
APFTTAEHALENVNLVSEGAVSDFLKNFMETNLPLSKAKPVKLGVHRDPK
LKSSVSEALGAKVSVVSDEQCDELLRGIRMHLSHFISGLKAADAVKAQLG
LAHSYSRSKVKFNVHKADNMIIQSIALLDQLDKDINTFAMRIREWYSWHF
PELVKVVPDNIQYARVVGVVRDKSTLSQLSVPALDKVLMNEDQARSVVSA
AESSMGADISDVDLVNIDMFASRVVQLAEYRASLHNYLRSKMSVVAPNLA
ALIGEQVGARLISHAGSLTSLAKYPASTVQILGAEKALFRALKTKGKTPK
YGLLYHSTYIGKAKQKNKGRISRYLANKCSIASRMDCFAEVTTDVFGRKL
KEQVEERLRFYESGKAPRKNIDVMQEAVKEVQEEHPASNDVDMKDGGEQN
SERAEKEDKDVEMKTPDDQPKKKKKKDKSSSKKDKSSSKKDKSSKEKKRK
RESSSSKEKKSKKKADS*

spliced messenger RNA

>Gvermi5720.t1 ID=Gvermi5720.t1|Name=Gvermi5720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at ScGOVlb_776:1261816..1263369+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCTCTTTCTTCTCTCCGAGTCGGCGCTGGGCTACGCGCTGTTCCA
AGTCGTGGAACATGACGTCATTGCGTCGCAAGTGGACAGCATGCAGGCGG
CAATAGCCGAGTACCCCCGCTTCGCAAAGATGGTCAAGCTCAAGGCCTTT
GCCCCCTTCACCACCGCGGAGCACGCCCTGGAGAACGTCAATCTCGTTTC
CGAGGGCGCCGTGTCCGACTTTCTCAAGAACTTTATGGAAACAAACCTGC
CGCTGTCCAAGGCAAAGCCGGTCAAGCTGGGCGTGCATCGAGACCCCAAG
CTCAAAAGCTCAGTGTCCGAAGCGCTTGGTGCCAAAGTCAGCGTCGTTTC
AGATGAGCAGTGCGACGAACTGCTCCGCGGTATTCGCATGCATCTCAGTC
ACTTCATCAGCGGCCTCAAGGCTGCGGACGCCGTCAAGGCCCAGCTCGGT
CTTGCGCACTCCTATTCCAGGTCAAAAGTGAAGTTCAATGTCCATAAGGC
AGATAATATGATCATCCAGTCTATCGCGCTGCTTGACCAGCTCGACAAGG
ACATCAACACCTTTGCCATGCGTATTCGAGAGTGGTATTCGTGGCATTTC
CCCGAGCTTGTCAAGGTGGTGCCAGACAACATCCAGTACGCCCGAGTGGT
TGGAGTCGTGCGTGACAAGTCCACACTGTCGCAGCTTTCGGTCCCTGCAC
TTGACAAAGTGCTCATGAACGAAGATCAGGCCCGATCGGTTGTGAGTGCG
GCAGAGTCGTCGATGGGCGCCGATATCTCAGATGTGGATCTCGTCAACAT
AGACATGTTCGCTTCCAGAGTGGTACAACTCGCCGAATATCGCGCAAGCT
TGCACAACTACCTGAGATCCAAGATGTCAGTCGTTGCTCCCAACCTGGCC
GCCCTTATCGGCGAGCAGGTGGGCGCGAGGTTAATCTCTCATGCTGGCTC
CCTCACCTCTCTCGCCAAGTACCCTGCGTCCACCGTTCAAATCCTCGGCG
CGGAGAAGGCGCTGTTTCGGGCGCTGAAAACCAAAGGAAAGACCCCAAAA
TATGGTCTGCTGTACCACTCTACGTACATTGGCAAGGCGAAGCAGAAGAA
CAAGGGCCGAATATCAAGATACCTTGCAAACAAGTGCTCGATCGCTTCGC
GTATGGATTGCTTTGCTGAGGTAACGACGGACGTGTTTGGTCGAAAACTA
AAGGAGCAAGTCGAAGAGAGACTCAGATTTTATGAAAGCGGCAAGGCACC
GCGCAAGAATATTGACGTCATGCAGGAGGCTGTCAAGGAGGTGCAGGAGG
AGCATCCGGCATCCAACGATGTCGACATGAAGGATGGCGGCGAACAAAAT
AGCGAGCGGGCAGAGAAAGAAGACAAGGACGTAGAAATGAAGACACCTGA
CGACCAGCCCaagaagaagaagaagaaAGATAAATCATCTTCAAAGAAGG
ATAAATCCTCGTCGAAAAAGGACAAGTCAAGCAAAGAGAAGAAACGCAAG
CGAGAATCCTCGTCAAGCAAAGAAAAGAAGAGTAAGAAGAAAGCAGATTC
TTAA

protein sequence of Gvermi5720.t1

>Gvermi5720.t1 ID=Gvermi5720.t1|Name=Gvermi5720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=518bp
MNLFLLSESALGYALFQVVEHDVIASQVDSMQAAIAEYPRFAKMVKLKAF
APFTTAEHALENVNLVSEGAVSDFLKNFMETNLPLSKAKPVKLGVHRDPK
LKSSVSEALGAKVSVVSDEQCDELLRGIRMHLSHFISGLKAADAVKAQLG
LAHSYSRSKVKFNVHKADNMIIQSIALLDQLDKDINTFAMRIREWYSWHF
PELVKVVPDNIQYARVVGVVRDKSTLSQLSVPALDKVLMNEDQARSVVSA
AESSMGADISDVDLVNIDMFASRVVQLAEYRASLHNYLRSKMSVVAPNLA
ALIGEQVGARLISHAGSLTSLAKYPASTVQILGAEKALFRALKTKGKTPK
YGLLYHSTYIGKAKQKNKGRISRYLANKCSIASRMDCFAEVTTDVFGRKL
KEQVEERLRFYESGKAPRKNIDVMQEAVKEVQEEHPASNDVDMKDGGEQN
SERAEKEDKDVEMKTPDDQPKKKKKKDKSSSKKDKSSSKKDKSSKEKKRK
RESSSSKEKKSKKKADS*

mRNA from alignment at ScGOVlb_776:1261816..1263369+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi5720.t1 ID=Gvermi5720.t1|Name=Gvermi5720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at ScGOVlb_776:1261816..1263369+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATCTCTTTCTTCTCTCCGAGTCGGCGCTGGGCTACGCGCTGTTCCA
AGTCGTGGAACATGACGTCATTGCGTCGCAAGTGGACAGCATGCAGGCGG
CAATAGCCGAGTACCCCCGCTTCGCAAAGATGGTCAAGCTCAAGGCCTTT
GCCCCCTTCACCACCGCGGAGCACGCCCTGGAGAACGTCAATCTCGTTTC
CGAGGGCGCCGTGTCCGACTTTCTCAAGAACTTTATGGAAACAAACCTGC
CGCTGTCCAAGGCAAAGCCGGTCAAGCTGGGCGTGCATCGAGACCCCAAG
CTCAAAAGCTCAGTGTCCGAAGCGCTTGGTGCCAAAGTCAGCGTCGTTTC
AGATGAGCAGTGCGACGAACTGCTCCGCGGTATTCGCATGCATCTCAGTC
ACTTCATCAGCGGCCTCAAGGCTGCGGACGCCGTCAAGGCCCAGCTCGGT
CTTGCGCACTCCTATTCCAGGTCAAAAGTGAAGTTCAATGTCCATAAGGC
AGATAATATGATCATCCAGTCTATCGCGCTGCTTGACCAGCTCGACAAGG
ACATCAACACCTTTGCCATGCGTATTCGAGAGTGGTATTCGTGGCATTTC
CCCGAGCTTGTCAAGGTGGTGCCAGACAACATCCAGTACGCCCGAGTGGT
TGGAGTCGTGCGTGACAAGTCCACACTGTCGCAGCTTTCGGTCCCTGCAC
TTGACAAAGTGCTCATGAACGAAGATCAGGCCCGATCGGTTGTGAGTGCG
GCAGAGTCGTCGATGGGCGCCGATATCTCAGATGTGGATCTCGTCAACAT
AGACATGTTCGCTTCCAGAGTGGTACAACTCGCCGAATATCGCGCAAGCT
TGCACAACTACCTGAGATCCAAGATGTCAGTCGTTGCTCCCAACCTGGCC
GCCCTTATCGGCGAGCAGGTGGGCGCGAGGTTAATCTCTCATGCTGGCTC
CCTCACCTCTCTCGCCAAGTACCCTGCGTCCACCGTTCAAATCCTCGGCG
CGGAGAAGGCGCTGTTTCGGGCGCTGAAAACCAAAGGAAAGACCCCAAAA
TATGGTCTGCTGTACCACTCTACGTACATTGGCAAGGCGAAGCAGAAGAA
CAAGGGCCGAATATCAAGATACCTTGCAAACAAGTGCTCGATCGCTTCGC
GTATGGATTGCTTTGCTGAGGTAACGACGGACGTGTTTGGTCGAAAACTA
AAGGAGCAAGTCGAAGAGAGACTCAGATTTTATGAAAGCGGCAAGGCACC
GCGCAAGAATATTGACGTCATGCAGGAGGCTGTCAAGGAGGTGCAGGAGG
AGCATCCGGCATCCAACGATGTCGACATGAAGGATGGCGGCGAACAAAAT
AGCGAGCGGGCAGAGAAAGAAGACAAGGACGTAGAAATGAAGACACCTGA
CGACCAGCCCaagaagaagaagaagaaAGATAAATCATCTTCAAAGAAGG
ATAAATCCTCGTCGAAAAAGGACAAGTCAAGCAAAGAGAAGAAACGCAAG
CGAGAATCCTCGTCAAGCAAAGAAAAGAAGAGTAAGAAGAAAGCAGATTC
TTAA

Coding sequence (CDS) from alignment at ScGOVlb_776:1261816..1263369+

>Gvermi5720.t1 ID=Gvermi5720.t1|Name=Gvermi5720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1554bp|location=Sequence derived from alignment at ScGOVlb_776:1261816..1263369+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATCTCTTTCTTCTCTCCGAGTCGGCGCTGGGCTACGCGCTGTTCCA
AGTCGTGGAACATGACGTCATTGCGTCGCAAGTGGACAGCATGCAGGCGG
CAATAGCCGAGTACCCCCGCTTCGCAAAGATGGTCAAGCTCAAGGCCTTT
GCCCCCTTCACCACCGCGGAGCACGCCCTGGAGAACGTCAATCTCGTTTC
CGAGGGCGCCGTGTCCGACTTTCTCAAGAACTTTATGGAAACAAACCTGC
CGCTGTCCAAGGCAAAGCCGGTCAAGCTGGGCGTGCATCGAGACCCCAAG
CTCAAAAGCTCAGTGTCCGAAGCGCTTGGTGCCAAAGTCAGCGTCGTTTC
AGATGAGCAGTGCGACGAACTGCTCCGCGGTATTCGCATGCATCTCAGTC
ACTTCATCAGCGGCCTCAAGGCTGCGGACGCCGTCAAGGCCCAGCTCGGT
CTTGCGCACTCCTATTCCAGGTCAAAAGTGAAGTTCAATGTCCATAAGGC
AGATAATATGATCATCCAGTCTATCGCGCTGCTTGACCAGCTCGACAAGG
ACATCAACACCTTTGCCATGCGTATTCGAGAGTGGTATTCGTGGCATTTC
CCCGAGCTTGTCAAGGTGGTGCCAGACAACATCCAGTACGCCCGAGTGGT
TGGAGTCGTGCGTGACAAGTCCACACTGTCGCAGCTTTCGGTCCCTGCAC
TTGACAAAGTGCTCATGAACGAAGATCAGGCCCGATCGGTTGTGAGTGCG
GCAGAGTCGTCGATGGGCGCCGATATCTCAGATGTGGATCTCGTCAACAT
AGACATGTTCGCTTCCAGAGTGGTACAACTCGCCGAATATCGCGCAAGCT
TGCACAACTACCTGAGATCCAAGATGTCAGTCGTTGCTCCCAACCTGGCC
GCCCTTATCGGCGAGCAGGTGGGCGCGAGGTTAATCTCTCATGCTGGCTC
CCTCACCTCTCTCGCCAAGTACCCTGCGTCCACCGTTCAAATCCTCGGCG
CGGAGAAGGCGCTGTTTCGGGCGCTGAAAACCAAAGGAAAGACCCCAAAA
TATGGTCTGCTGTACCACTCTACGTACATTGGCAAGGCGAAGCAGAAGAA
CAAGGGCCGAATATCAAGATACCTTGCAAACAAGTGCTCGATCGCTTCGC
GTATGGATTGCTTTGCTGAGGTAACGACGGACGTGTTTGGTCGAAAACTA
AAGGAGCAAGTCGAAGAGAGACTCAGATTTTATGAAAGCGGCAAGGCACC
GCGCAAGAATATTGACGTCATGCAGGAGGCTGTCAAGGAGGTGCAGGAGG
AGCATCCGGCATCCAACGATGTCGACATGAAGGATGGCGGCGAACAAAAT
AGCGAGCGGGCAGAGAAAGAAGACAAGGACGTAGAAATGAAGACACCTGA
CGACCAGCCCaagaagaagaagaagaaAGATAAATCATCTTCAAAGAAGG
ATAAATCCTCGTCGAAAAAGGACAAGTCAAGCAAAGAGAAGAAACGCAAG
CGAGAATCCTCGTCAAGCAAAGAAAAGAAGAGTAAGAAGAAAGCAGATTC
TTAA