Gvermi5672.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5672.t1
Unique NameGvermi5672.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length119
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:969461..969817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704868.1
Preferred nameSNRPD1
PFAMsLSM
Max annot lvl2759|Eukaryota
KEGG rclassRC00046,RC00150,RC00180
KEGG koko:K00505,ko:K10645,ko:K11087
KEGG ReactionR00731,R02078,R02363,R02383,R04693,R04884
KEGG Pathwayko00350,ko00950,ko00965,ko01100,ko01110,ko03040,ko04916,ko05322,map00350,map00950,map00965,map01100,map01110,map03040,map04916,map05322
KEGG ModuleM00042,M00351,M00352,M00354,M00355,M00398
GOsGO:0000243,GO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031047,GO:0031090,GO:0031323,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0035194,GO:0035770,GO:0036464,GO:0040029,GO:0043021,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045292,GO:0045495,GO:0046483,GO:0046540,GO:0046907,GO:0048519,GO:0050789,GO:0050794,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0060293,GO:0065003,GO:0065007,GO:0070013,GO:0070990,GO:0071004,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0098588,GO:0098805,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990234,GO:1990446,GO:1990904
Evalue6.51e-33
EggNOG OGsCOG1958@1|root,KOG3428@2759|Eukaryota
EC1.14.18.1,2.3.2.27
Descriptionspliceosomal snRNP assembly
COG categoryK
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03041,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5672Gvermi5672Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_776 969461..969817 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5672.t1.stop1Gvermi5672.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_776 969461..969463 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5672.t1.CDS1Gvermi5672.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 969461..969817 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5672.t1.exon1Gvermi5672.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 969461..969817 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5672.t1.start1Gvermi5672.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_776 969815..969817 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5672.t1Gvermi5672.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_776 969461..969817 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5672.t1 ID=Gvermi5672.t1|Name=Gvermi5672.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=119bp
MKLVSFLVKLRSETVTVELKNGSTAHGTVTGVDHSMNVHLKSVTLHVRGR
NPAKLQALSIRGSTVRYVILPDSLALDALLVDDGLRPRRTTNPDRQSSGR
IGKGRGRGRGRGRARSRR*
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spliced messenger RNA

>Gvermi5672.t1 ID=Gvermi5672.t1|Name=Gvermi5672.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=357bp|location=Sequence derived from alignment at ScGOVlb_776:969461..969817- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTCGTCAGCTTCCTTGTCAAATTAAGAAGCGAAACCGTAACTGT
GGAGCTAAAGAATGGATCCACGGCTCATGGAACTGTGACAGGCGTTGACC
ATAGCATGAATGTGCACCTGAAAAGCGTAACCCTTCACGTGCGTGGTCGC
AACCCCGCCAAACTACAAGCTCTTTCCATTCGCGGTTCAACCGTGCGCTA
CGTTATTCTTCCGGATTCGCTTGCTCTTGATGCCCTTCTAGTTGACGATG
GTCTTCGTCCCAGAAGAACCACCAACCCGGATCGACAATCTTCCGGTAGA
ATAGGAAAGGGTCGGGGAAGAGGTCGTGGGCGCGGGCGCGCACGTTCCAG
ACGATGA
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protein sequence of Gvermi5672.t1

>Gvermi5672.t1 ID=Gvermi5672.t1|Name=Gvermi5672.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=119bp
MKLVSFLVKLRSETVTVELKNGSTAHGTVTGVDHSMNVHLKSVTLHVRGR
NPAKLQALSIRGSTVRYVILPDSLALDALLVDDGLRPRRTTNPDRQSSGR
IGKGRGRGRGRGRARSRR*
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mRNA from alignment at ScGOVlb_776:969461..969817-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5672.t1 ID=Gvermi5672.t1|Name=Gvermi5672.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=357bp|location=Sequence derived from alignment at ScGOVlb_776:969461..969817- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCTCGTCAGCTTCCTTGTCAAATTAAGAAGCGAAACCGTAACTGT
GGAGCTAAAGAATGGATCCACGGCTCATGGAACTGTGACAGGCGTTGACC
ATAGCATGAATGTGCACCTGAAAAGCGTAACCCTTCACGTGCGTGGTCGC
AACCCCGCCAAACTACAAGCTCTTTCCATTCGCGGTTCAACCGTGCGCTA
CGTTATTCTTCCGGATTCGCTTGCTCTTGATGCCCTTCTAGTTGACGATG
GTCTTCGTCCCAGAAGAACCACCAACCCGGATCGACAATCTTCCGGTAGA
ATAGGAAAGGGTCGGGGAAGAGGTCGTGGGCGCGGGCGCGCACGTTCCAG
ACGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_776:969461..969817-

>Gvermi5672.t1 ID=Gvermi5672.t1|Name=Gvermi5672.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=357bp|location=Sequence derived from alignment at ScGOVlb_776:969461..969817- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCTCGTCAGCTTCCTTGTCAAATTAAGAAGCGAAACCGTAACTGT
GGAGCTAAAGAATGGATCCACGGCTCATGGAACTGTGACAGGCGTTGACC
ATAGCATGAATGTGCACCTGAAAAGCGTAACCCTTCACGTGCGTGGTCGC
AACCCCGCCAAACTACAAGCTCTTTCCATTCGCGGTTCAACCGTGCGCTA
CGTTATTCTTCCGGATTCGCTTGCTCTTGATGCCCTTCTAGTTGACGATG
GTCTTCGTCCCAGAAGAACCACCAACCCGGATCGACAATCTTCCGGTAGA
ATAGGAAAGGGTCGGGGAAGAGGTCGTGGGCGCGGGCGCGCACGTTCCAG
ACGATGA
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