Gvermi5656.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi5656.t1
Unique Name	Gvermi5656.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	141

Homology

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BLAST of Gvermi5656.t1 vs. uniprot
Match: A0A2V3IYM4_9FLOR (RNA polymerase-associated protein CTR9-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYM4_9FLOR)

HSP 1 Score: 208 bits (530), Expect = 7.710e-60
Identity = 101/137 (73.72%), Postives = 118/137 (86.13%), Query Frame = 0

Query:    1 MVTGDDTITRLDILAALGGAYFMEAEQIFSPEKGRDLLRSDVDVFARAENSEMDYPTVWTARALAALHGGKISTTTSFDHAMANGLVLLAIGLLALILNKPSRDKDPIALYTSALRSNICPPCVWTGSAYALYHNDS 137
            M++G+DTITRLDILAALGGAY M+AE+ FSPE+ R+LLR   DVFARAEN +MDYP VWTAR  A LHGGKI TTT FDHAMANGLVL AIGL AL+LNKP++DKDP++L TSALRSN+CPP VWTG AYALY +++
Sbjct:   98 MLSGEDTITRLDILAALGGAYVMQAEKSFSPEQRRELLRKAGDVFARAENFDMDYPAVWTARGWAELHGGKIGTTTWFDHAMANGLVLGAIGLAALVLNKPAKDKDPVSLLTSALRSNLCPPGVWTGLAYALYRDNA 234

The following BLAST results are available for this feature:

BLAST of Gvermi5656.t1 vs. uniprot

BLAST of Gvermi5656.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IYM4_9FLOR	7.710e-60	73.72	RNA polymerase-associated protein CTR9-like n=1 Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..80
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 99..140
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 81..98
None	No IPR available	TMHMM	TMhelix		coord: 81..98

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_776	contig	ScGOVlb_776:914561..914983 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi5656.t1	Gvermi5656.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_776 914561..914983 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi5656.t1 ID=Gvermi5656.t1|Name=Gvermi5656.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=141bp
MVTGDDTITRLDILAALGGAYFMEAEQIFSPEKGRDLLRSDVDVFARAEN
SEMDYPTVWTARALAALHGGKISTTTSFDHAMANGLVLLAIGLLALILNK
PSRDKDPIALYTSALRSNICPPCVWTGSAYALYHNDSTSR*