Gvermi5655.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5655.t1
Unique NameGvermi5655.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length222
Homology
BLAST of Gvermi5655.t1 vs. uniprot
Match: A0A2V3IZY8_9FLOR (Peptide chain release factor 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZY8_9FLOR)

HSP 1 Score: 316 bits (810), Expect = 1.720e-102
Identity = 156/219 (71.23%), Postives = 178/219 (81.28%), Query Frame = 0
Query:    2 LNDELMPMFFGSAMSNFGVELFLRLFLELGRCPPSKQNSTGLFAPDTQHFTWQLFKLQPSKDIRHRDRLAFIRIFSGEFEKKMKVNNARHCKTMALTTRQGFFAAERYKVQAAFSGDMNGLYKPGIFAIRDAVYTGGNLSFQSIPSFSPELFAYIQNPNPLAYKNFCKEPNQLLEKGAVQLLRAREDKGNEDPILGSVELLQFEVVHRRHKDEYNISSG 220
            L  +L PMFFGSAMSNFGVELFLR FLE+GRCPP+K +S GL APD + FT Q+FKLQ + D RHRDRLAF+RIFSG FEK MKVNN+RH +++ALT  QG FAAERY V  AF+GD+ GL  PG+FAI D VYTG  L+F  IPSFSPELFAY++NPNP AYKNF K  NQLLE+GAVQLLRARED+GNEDPIL +V  LQFEVV RR KDEYN+ SG
Sbjct:  277 LQGDLSPMFFGSAMSNFGVELFLRSFLEMGRCPPAKDSSVGLVAPDGESFTGQVFKLQANMDARHRDRLAFVRIFSGVFEKGMKVNNSRHGRSVALTRPQGLFAAERYTVDTAFAGDVIGLNNPGVFAIGDTVYTGSKLAFPGIPSFSPELFAYLKNPNPSAYKNFRKGLNQLLEEGAVQLLRAREDEGNEDPILAAVGQLQFEVVQRRLKDEYNVESG 495          
BLAST of Gvermi5655.t1 vs. uniprot
Match: R7QD27_CHOCR (Peptide chain release factor RF3 (GTP-binding subunit), Rhodoplastic n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QD27_CHOCR)

HSP 1 Score: 279 bits (713), Expect = 4.230e-88
Identity = 141/218 (64.68%), Postives = 174/218 (79.82%), Query Frame = 0
Query:    5 ELMPMFFGSAMSNFGVELFLRLFLELGRCPPSKQNSTGLFAPDTQHFTWQLFKLQPSKDIRHRDRLAFIRIFSGEFEKKMKVNNAR-HCKTMALTTRQGFFAAERYKVQAAFSGDMNGLYKPGIFAIRDAVY--TGGNLSFQSIPSFSPELFAYIQNPNPLAYKNFCKEPNQLLEKGAVQLLRAREDKGNEDPILGSVELLQFEVVHRRHKDEYNISS 219
            EL PMFFGSAMSNFGVELFL++FLE+GRCPP+K+++TGL  PD + FT Q+FKLQ + D +HRDRLAF+R+FSG FEK MKV+NAR   K++ALT  Q  FAA+RY V+ AF+GD+ GL  PG+FAI D +   +   LS+  IPSFSPELFAYI+NPNP AYKNF K  NQLL++GAVQ+LRA+ D+GNEDPI+ +V  LQFEVV RR KDEYN+ S
Sbjct:  259 ELTPMFFGSAMSNFGVELFLKMFLEMGRCPPAKKSNTGLVDPDAKLFTGQVFKLQANMDPKHRDRLAFVRVFSGVFEKGMKVSNARIPGKSIALTRPQSLFAADRYTVETAFAGDVIGLNNPGVFAIGDTLCGDSSKKLSYPGIPSFSPELFAYIKNPNPSAYKNFRKGLNQLLDEGAVQMLRAKGDQGNEDPIMAAVGQLQFEVVQRRLKDEYNVDS 476          
BLAST of Gvermi5655.t1 vs. uniprot
Match: A0A6S9HEF4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HEF4_HETAK)

HSP 1 Score: 230 bits (587), Expect = 6.850e-69
Identity = 116/219 (52.97%), Postives = 154/219 (70.32%), Query Frame = 0
Query:    2 LNDELMPMFFGSAMSNFGVELFLRLFLELGRCPPSKQNSTGLFAPDTQHFTWQLFKLQPSKDIRHRDRLAFIRIFSGEFEKKMKVNNARHCKTMALTTRQGFFAAERYKVQAAFSGDMNGLYKPGIFAIRDAVYTGGN-LSFQSIPSFSPELFAYIQNPNPLAYKNFCKEPNQLLEKGAVQLLRAREDKGNEDPILGSVELLQFEVVHRRHKDEYNISS 219
            L  E  PMFFGSAM+NFGVE+FLR FL LG+ PP++  + G  AP    FT  +FKLQ + D +HRDRLA++R+ SG+FEK MKV ++R  K + L+  Q  FA++R  V+ A+ GD+ GL  PG+FAI D +YTG   + +  IPSFSPE F+YI+NPNP  YKN+ K  +QL+E+GAVQLLRA  D GN +PIL +V  LQF+VV  R +DEY + +
Sbjct:  305 LAGEQSPMFFGSAMTNFGVEVFLRRFLTLGQAPPARTTAAGPLAPTHPEFTGFVFKLQANLDPKHRDRLAYVRVCSGKFEKGMKVTHSRTKKNVNLSAAQALFASDRETVETAYPGDIIGLNNPGVFAIGDTIYTGNQPVKYPGIPSFSPECFSYIRNPNPSKYKNYRKGLDQLMEEGAVQLLRAYGDDGNGNPILAAVGTLQFDVVQYRLQDEYGVET 523          
BLAST of Gvermi5655.t1 vs. uniprot
Match: A0A7S2V815_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V815_9STRA)

HSP 1 Score: 224 bits (570), Expect = 2.170e-68
Identity = 114/217 (52.53%), Postives = 155/217 (71.43%), Query Frame = 0
Query:    5 ELMPMFFGSAMSNFGVELFLRLFLELGRCPPSKQNSTG-LFAPDTQHFTWQLFKLQPSKDIRHRDRLAFIRIFSGEFEKKMKVNNARHCKTMALTTRQGFFAAERYKVQAAFSGDMNGLYKPGIFAIRDAVYTGGN-LSFQSIPSFSPELFAYIQNPNPLAYKNFCKEPNQLLEKGAVQLLRAREDKGNEDPILGSVELLQFEVVHRRHKDEYNISS 219
            E  PMFFGSAM+NFGVELFL+ FL LG+ P S++   G +  PD   FT  +FKLQ + D +HRDRLA++R+ SG+F+K MKV+++R  + + L+  Q  FA++R  V+ A+ GD+ GL  PG+FAI D +YTG   + +  IPSFSPE FAYI++ +P  YKNF K  +QLLE+GAVQLLRA++D GN +PIL +V  LQF+VV  R KDEY + +
Sbjct:  134 EQSPMFFGSAMTNFGVELFLQRFLTLGQQPTSRETQMGDVLGPDHSQFTGFVFKLQANLDPKHRDRLAYVRVCSGKFQKGMKVSHSRSSRKLTLSQAQTLFASDRDTVEEAYPGDVIGLNNPGMFAIGDTLYTGNTKIKYPGIPSFSPECFAYIRSTDPTKYKNFRKGIDQLLEEGAVQLLRAKDDDGNGNPILAAVGALQFDVVQHRLKDEYGVET 350          
BLAST of Gvermi5655.t1 vs. uniprot
Match: A0A7S2ZD12_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZD12_9RHOD)

HSP 1 Score: 224 bits (570), Expect = 2.200e-66
Identity = 117/221 (52.94%), Postives = 152/221 (68.78%), Query Frame = 0
Query:    1 MLNDELMPMFFGSAMSNFGVELFLRLFLELGRCPPSKQNSTGLFAPDTQHFTWQLFKLQPSKDIRHRDRLAFIRIFSGEFEKKMKVNNAR-HCKTMALTTRQGFFAAERYKVQAAFSGDMNGLYKPGIFAIRDAVYTGGN-LSFQSIPSFSPELFAYIQNPNPLAYKNFCKEPNQLLEKGAVQLLRAREDKGNEDPILGSVELLQFEVVHRRHKDEYNISS 219
            +L  +   ++FGSAM+NFGV++FL  FLELGR P  + +S G   P    F+  +FKLQ + D RHRDRLAFIRI SG +E+ MKV ++R   + + L   Q  FA +R  VQ AF GD+ GL  PG+F+I D +Y G   + F  IPSFSPE+FAY++NPNP  YKNF K   QLLE+GAVQLLR +ED+GNEDPIL +V  LQF+VV +R +DEY + S
Sbjct:  302 LLKGDQTVVYFGSAMTNFGVQIFLDDFLELGRAPAERSSSIGTIDPGRDEFSGFVFKLQANMDPRHRDRLAFIRIVSGRYERGMKVLHSRLGARQINLNQAQKLFADDRESVQVAFPGDIVGLNNPGLFSIGDTIYCGSEKVVFPGIPSFSPEIFAYLRNPNPSNYKNFKKGLQQLLEEGAVQLLRTKEDQGNEDPILAAVGQLQFDVVQQRLQDEYGVES 522          
BLAST of Gvermi5655.t1 vs. uniprot
Match: A0A836C6V6_9STRA (PRF3, plastid translation release factor RF3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6V6_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.270e-64
Identity = 120/222 (54.05%), Postives = 148/222 (66.67%), Query Frame = 0
Query:    5 ELMPMFFGSAMSNFGVELFLRLFLELGRCPPSKQNSTG-----LFAPDTQHFTWQLFKLQPSKDIRHRDRLAFIRIFSGEFEKKMKVNNAR-HCKTMALTTRQGFFAAERYKVQAAFSGDMNGLYKPGIFAIRDAVYTGGN-LSFQSIPSFSPELFAYIQNPNPLAYKNFCKEPNQLLEKGAVQLLRAREDKGNEDPILGSVELLQFEVVHRRHKDEYNISS 219
            E  PMFFGSAM NFGVELFL+ FL LG+ P  +  S+G        P+   FT   FKLQ + D RHRDRLA+IR+ SG FEK M+V+++R   +T+ LT  Q  FA +R  V  AF GD+ GL  PG+FAI D +YTG   ++F  IPSFSPE FAYI+NPNP  YKN+ K   QLL++GAVQLLR R D GN  PIL +V  LQF+VV  R KDEY + +
Sbjct:  319 EQSPMFFGSAMVNFGVELFLKRFLTLGQGPAPRSISSGGNAAEQLTPEYPEFTGFCFKLQANLDPRHRDRLAYIRVVSGRFEKGMRVSHSRMKGRTVNLTQAQQLFAQDRESVSEAFPGDVIGLNNPGVFAIGDTIYTGARRVAFPGIPSFSPECFAYIRNPNPSTYKNYNKGLTQLLDEGAVQLLRERSDDGNGSPILAAVGTLQFDVVQYRLKDEYGVET 540          
BLAST of Gvermi5655.t1 vs. uniprot
Match: A0A7S0ZL31_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZL31_9RHOD)

HSP 1 Score: 218 bits (554), Expect = 4.970e-64
Identity = 113/222 (50.90%), Postives = 154/222 (69.37%), Query Frame = 0
Query:    2 LNDELMPMFFGSAMSNFGVELFLRLFLELGRCPPSKQNSTG-LFAPDTQHFTWQLFKLQPSKDIRHRDRLAFIRIFSGEFEKKMKVNNAR--HCKTMALTTRQGFFAAERYKVQAAFSGDMNGLYKPGIFAIRDAVYTGGN-LSFQSIPSFSPELFAYIQNPNPLAYKNFCKEPNQLLEKGAVQLLRAREDKGNEDPILGSVELLQFEVVHRRHKDEYNISS 219
            L  +L P+FFGSAMS FGVEL L  FLE+ + P S++   G +  P  + FT  +FKLQ + D +HRDR+A++R+ SG+F K M+VN++R  + K +AL+  Q  F ++R  ++ A+ GD+ GL  PG F I D +YTG   + F  IPSFSPELFAY++NP P   KNF K   QLLE+GAVQ+LRAR D+G+EDPIL +V  LQFEVV +R ++EYN+ S
Sbjct:  307 LRGDLTPIFFGSAMSTFGVELLLNRFLEMSQAPASRELLDGSIVKPTHEEFTGFVFKLQANMDPKHRDRIAYVRVISGKFTKGMRVNHSRMKNGKQIALSRPQKLFGSDRVVIEDAYPGDVVGLNNPGAFVIGDTLYTGNQRVRFPGIPSFSPELFAYLRNPQPSQRKNFLKGLGQLLEEGAVQMLRARSDEGSEDPILAAVGQLQFEVVQQRLREEYNVES 528          
BLAST of Gvermi5655.t1 vs. uniprot
Match: A0A350XDH9_9CYAN (Peptide chain release factor 3 (Fragment) n=1 Tax=Cyanobacteria bacterium UBA11372 TaxID=2055768 RepID=A0A350XDH9_9CYAN)

HSP 1 Score: 211 bits (538), Expect = 5.190e-64
Identity = 105/215 (48.84%), Postives = 149/215 (69.30%), Query Frame = 0
Query:    5 ELMPMFFGSAMSNFGVELFLRLFLELGRCPPSKQNSTGLFAPDTQHFTWQLFKLQPSKDIRHRDRLAFIRIFSGEFEKKMKVNNARHCKTMALTTRQGFFAAERYKVQAAFSGDMNGLYKPGIFAIRDAVYTGGNLSFQSIPSFSPELFAYIQNPNPLAYKNFCKEPNQLLEKGAVQLLRAREDKGNEDPILGSVELLQFEVVHRRHKDEYNISS 219
            EL P+FFGSAM+NFGV+LFL  FLEL   P S+ +S G   P    F+  +FKLQ + D +HRDR+AF+R+ +G+FEK M VN+AR  KT+ L+  Q  FA +R  ++ A++GD+ GL  PG+FAI D +YTG  L ++ IP FSPELFA+++NPNP  +K F K  ++L E+GAVQ++ +  D+   DPIL +V  LQF+VV  R ++EY + +
Sbjct:   76 ELTPVFFGSAMTNFGVQLFLNAFLELAAKPGSRNSSAGEIPPTNPDFSGFVFKLQANMDPKHRDRVAFVRVCTGKFEKDMVVNHARTGKTVRLSRPQKLFAQDRESIEEAYAGDVIGLNNPGVFAIGDTIYTGQKLEYEGIPCFSPELFAFLRNPNPSKFKQFRKGVSELQEEGAVQIMYSA-DEAKRDPILAAVGQLQFDVVQFRLQNEYGVET 289          
BLAST of Gvermi5655.t1 vs. uniprot
Match: D8LC91_ECTSI (PRF3, plastid translation release factor RF3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC91_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 1.940e-62
Identity = 114/221 (51.58%), Postives = 149/221 (67.42%), Query Frame = 0
Query:    2 LNDELMPMFFGSAMSNFGVELFLRLFLELGRCPPSKQ-NSTGLFAPDTQHFTWQLFKLQPSKDIRHRDRLAFIRIFSGEFEKKMKVNNAR-HCKTMALTTRQGFFAAERYKVQAAFSGDMNGLYKPGIFAIRDAVYTGGN-LSFQSIPSFSPELFAYIQNPNPLAYKNFCKEPNQLLEKGAVQLLRAREDKGNEDPILGSVELLQFEVVHRRHKDEYNISS 219
            L  E  PMFFGSAM+NFGVELFL+ FL +G+ P S++  +  +  P    FT  +FKLQ + D RHRDRLA++R+ SG +EK MKV ++R   K + L   Q  FA ER  V AA+ GD+ G+  PG FAI D ++TG N + F  IPSFSPE FAY++NPNP  YKN+ K  +QLL++GAVQ+LR R D GN +PIL +V  LQF+VV  R K EY + +
Sbjct:  336 LTGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPSSRRMGNADVILPGYNEFTGFVFKLQANLDPRHRDRLAYVRVVSGRYEKGMKVQHSRMKGKQVTLAHAQQLFAQERETVLAAYPGDVIGINNPGHFAIGDTIFTGSNKIRFPGIPSFSPECFAYMRNPNPSKYKNYRKGLDQLLDEGAVQMLRERSDDGNGNPILAAVGTLQFDVVQHRMKAEYGVDT 556          
BLAST of Gvermi5655.t1 vs. uniprot
Match: A0A1L9QSM8_9CYAN (Peptide chain release factor 3 n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A1L9QSM8_9CYAN)

HSP 1 Score: 210 bits (535), Expect = 9.430e-62
Identity = 106/215 (49.30%), Postives = 147/215 (68.37%), Query Frame = 0
Query:    5 ELMPMFFGSAMSNFGVELFLRLFLELGRCPPSKQNSTGLFAPDTQHFTWQLFKLQPSKDIRHRDRLAFIRIFSGEFEKKMKVNNARHCKTMALTTRQGFFAAERYKVQAAFSGDMNGLYKPGIFAIRDAVYTGGNLSFQSIPSFSPELFAYIQNPNPLAYKNFCKEPNQLLEKGAVQLLRAREDKGNEDPILGSVELLQFEVVHRRHKDEYNISS 219
            EL P+FFGSAM+NFGV+LFL  FL+    P  ++++ GL +P+   FT  +FKLQ + D +HRDR+AF+R+ +G+FEK M V++AR  KT+ L+  Q  FA +R  V  A+ GD+ GL  PG+FAI D +YTG  L ++ IP FSPELFAY++NPNP  +K F K   QL E+GAVQ++ +  D+   DPIL +V  LQFEVV  R  +EY + +
Sbjct:  253 ELTPVFFGSAMTNFGVQLFLDAFLDYALKPGDRKSTQGLMSPEYPEFTGFVFKLQANMDPKHRDRVAFVRVCTGKFEKDMTVSHARTGKTVRLSRPQKLFAQDRGSVDVAYPGDVIGLNNPGVFAIGDTIYTGKKLEYEGIPCFSPELFAYLRNPNPSKFKQFHKGVTQLREEGAVQIMYS-SDESKRDPILAAVGQLQFEVVQFRLLNEYGVET 466          
The following BLAST results are available for this feature:
BLAST of Gvermi5655.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IZY8_9FLOR1.720e-10271.23Peptide chain release factor 3 n=1 Tax=Gracilariop... [more]
R7QD27_CHOCR4.230e-8864.68Peptide chain release factor RF3 (GTP-binding subu... [more]
A0A6S9HEF4_HETAK6.850e-6952.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V815_9STRA2.170e-6852.53Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2ZD12_9RHOD2.200e-6652.94Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A836C6V6_9STRA1.270e-6454.05PRF3, plastid translation release factor RF3 n=1 T... [more]
A0A7S0ZL31_9RHOD4.970e-6450.90Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A350XDH9_9CYAN5.190e-6448.84Peptide chain release factor 3 (Fragment) n=1 Tax=... [more]
D8LC91_ECTSI1.940e-6251.58PRF3, plastid translation release factor RF3 n=1 T... [more]
A0A1L9QSM8_9CYAN9.430e-6249.30Peptide chain release factor 3 n=3 Tax=Cyanobacter... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038467Peptide chain release factor 3, domain III superfamilyGENE3D3.30.70.3280Peptide chain release factor 3, domain IIIcoord: 145..220
e-value: 1.8E-19
score: 71.7
IPR032090Peptide chain release factor 3, C-terminalPFAMPF16658RF3_Ccoord: 142..218
e-value: 3.3E-21
score: 75.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 17..144
e-value: 1.7E-20
score: 75.5
IPR004548Peptide chain release factor 3PANTHERPTHR43556PEPTIDE CHAIN RELEASE FACTOR RF3coord: 2..218
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..28
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 29..221
IPR009000Translation protein, beta-barrel domain superfamilySUPERFAMILY50447Translation proteinscoord: 17..148
IPR035647EF-G domain III/V-likeSUPERFAMILY54980EF-G C-terminal domain-likecoord: 148..217

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:912999..913664 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5655.t1Gvermi5655.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_776 912999..913664 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5655.t1 ID=Gvermi5655.t1|Name=Gvermi5655.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=222bp
MLNDELMPMFFGSAMSNFGVELFLRLFLELGRCPPSKQNSTGLFAPDTQH
FTWQLFKLQPSKDIRHRDRLAFIRIFSGEFEKKMKVNNARHCKTMALTTR
QGFFAAERYKVQAAFSGDMNGLYKPGIFAIRDAVYTGGNLSFQSIPSFSP
ELFAYIQNPNPLAYKNFCKEPNQLLEKGAVQLLRAREDKGNEDPILGSVE
LLQFEVVHRRHKDEYNISSGS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038467RF3_dom_3_sf
IPR032090RF3_C
IPR027417P-loop_NTPase
IPR004548PrfC
IPR009000Transl_B-barrel_sf
IPR035647EFG_III/V