Gvermi5723.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5723.t1
Unique NameGvermi5723.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length198
Homology
BLAST of Gvermi5723.t1 vs. uniprot
Match: A0A2V3ISM9_9FLOR (Pre-mRNA-splicing factor 38 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISM9_9FLOR)

HSP 1 Score: 292 bits (748), Expect = 1.560e-98
Identity = 147/197 (74.62%), Postives = 166/197 (84.26%), Query Frame = 0
Query:    1 MANSTDEAALHNLGYDPQHLLPPITRSSIHLSPFWNRHLFGVSVADLVPLAASLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTAEIAVYLHQPHFKYARLLAAFYVRLMEAPPAVYRLLEPLLADFRKVVVRASDVPALLADAPAHRAFTVVRVDQVVDALLTQRELFAIPLPRLPPRPLLVDTAQLSPRKSALAL 197
            MAN+TDE ALH LGYDPQ+ +PPITRSSIH SP+WNRHLFGVSVADLVPLA SLS++S T G MHTPSPFLCMLLKLLQLAPTT EI+VYL Q HFKY R+LAAFY+RLME P AV+RLLEPLL+D+RK+V R+ DV   +     +  F +V VD +VDALLTQRELF IPLPRLPPRPLLV+TAQLS RKSALAL
Sbjct:    1 MANTTDEGALHRLGYDPQNHIPPITRSSIHRSPYWNRHLFGVSVADLVPLAVSLSYISGTQGPMHTPSPFLCMLLKLLQLAPTTPEISVYLDQTHFKYPRILAAFYIRLMETPAAVHRLLEPLLSDYRKLVARSVDVAPFMPTVSTNGTFVIVHVDDIVDALLTQRELFGIPLPRLPPRPLLVETAQLSARKSALAL 197          
BLAST of Gvermi5723.t1 vs. uniprot
Match: R7QB68_CHOCR (Pre-mRNA-splicing factor 38 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QB68_CHOCR)

HSP 1 Score: 177 bits (449), Expect = 3.010e-53
Identity = 106/196 (54.08%), Postives = 129/196 (65.82%), Query Frame = 0
Query:    1 MANSTDEAALHNLGYDPQHLLPPITRSSIHLSPFWNRHLFGVSVADLVPLAASLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTAEIAVYLHQPHFKYARLLAAFYVRLMEAPPAVYRLLEPLLADFRKVVVRASDVPALLADAPAHRAFTVVRVDQVVDALLTQRELFAIPLPRLPPRPLLVDT-AQLSPRKSAL 195
            MAN TD  ALH+ G DPQ+LL P  R S++LS FWN   FGV++AD+VPLAA L  +SA       P+PFLC+LLKLLQL+P   EIAV+L Q  FKYARLL AFYVRL   PP VY LLEPLLAD RK+VVR          A A  A  +V VD+++D LL +  +  I LPRLPPR ++ ++  QL PR   L
Sbjct:    1 MANKTDTYALHSRGTDPQNLLEPSLRHSVYLSRFWNESCFGVTLADVVPLAARLDRISAVTAP---PTPFLCLLLKLLQLSPEEPEIAVFLTQNDFKYARLLGAFYVRLALPPPRVYALLEPLLADLRKIVVREG--------ASAEHA--IVHVDELIDRLLREHLVVGITLPRLPPRHVVEESFVQLPPRPQLL 183          
BLAST of Gvermi5723.t1 vs. uniprot
Match: M2XT21_GALSU (Pre-mRNA-splicing factor 38 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XT21_GALSU)

HSP 1 Score: 142 bits (359), Expect = 1.490e-38
Identity = 81/195 (41.54%), Postives = 114/195 (58.46%), Query Frame = 0
Query:    1 MANSTDEAALHNLGYDPQHLLPPITRSSIHLSPFWNRHLFGVSVADLVPLAASLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTAEIAVYLHQPHFKYARLLAAFYVRLMEAPPAVYRLLEPLLADFRKVVVRASDVPALLADAPAHRAFTVVRVDQVVDALLTQRELFAIPLPRLPPRPLLVDTAQLSPRKSAL 195
            MAN TD  A+H  G+DPQ L+  ITR  I+   +W    FG++   LV  AA L+++   +G +  P+PF+C++LKLLQL+P    I  YL Q  FKY   LAAFY RL+     VYR LEPL  DFRK+ +R  +             + ++ VD+ +D LL + ++  I LPRLP R +L++   L+PRKS L
Sbjct:    1 MANRTDPLAIHAHGFDPQFLIDKITREKIYQCAYWKAECFGLTAETLVDKAAELTYVGGLYGPLKKPTPFICLILKLLQLSPDKEIIHQYLQQKKFKYLTALAAFYWRLVGNGTDVYRWLEPLYEDFRKLRIRREN------------KYELIHVDECIDELLQKEDVCDIKLPRLPNRNVLMEDRLLAPRKSKL 183          
BLAST of Gvermi5723.t1 vs. uniprot
Match: A0A316ZBR8_9BASI (Pre-mRNA-splicing factor 38 n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316ZBR8_9BASI)

HSP 1 Score: 139 bits (350), Expect = 5.830e-37
Identity = 82/195 (42.05%), Postives = 118/195 (60.51%), Query Frame = 0
Query:    1 MANSTDEAALHNLGYDPQHLLPPITRSSIHLSPFWNRHLFGVSVADLVPLAASLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTAEIAVYLHQPHFKYARLLAAFYVRLMEAPPAVYRLLEPLLADFRKVVVRASDVPALLADAPAHRAFTVVRVDQVVDALLTQRELFAIPLPRLPPRPLLVDTAQLSPRKSAL 195
            MAN T + AL+  G +PQHL+  + R+ I+ SP+W  H F ++ A +VP+AA L ++  ++GA   PSPFLC+LLKLLQL P  A I  Y+  P FKY R LAA YVR+      VY +LEP+L D+RK+  R  D+           ++ +  +D+ VD+LLT+  +  + LPRL  R +L +   L+PR S L
Sbjct:    1 MANQTLKGALNVRGTNPQHLVEKVVRARIYDSPYWKEHCFALTAASIVPVAARLPYIGGSYGAQR-PSPFLCLLLKLLQLQPARAIILEYIAAPEFKYLRALAAMYVRMTFPSLEVYEVLEPMLNDYRKL--RWRDMSG---------SYRITHMDEFVDSLLTEERVADLILPRLTRRDVLEEGEGLAPRASRL 183          
BLAST of Gvermi5723.t1 vs. uniprot
Match: A0A1X6NV66_PORUM (Pre-mRNA-splicing factor 38 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NV66_PORUM)

HSP 1 Score: 137 bits (344), Expect = 1.090e-36
Identity = 87/198 (43.94%), Postives = 112/198 (56.57%), Query Frame = 0
Query:    1 MANSTDEAALHNLGYDPQHLLPPITRSSIHLSPFWNRHLFGVSVADLVPLAASLSHLSAT---HGAMHTPSPFLCMLLKLLQLAPTTAEIAVYLHQPHFKYARLLAAFYVRLMEAPPAVYRLLEPLLADFRKVVVRASDVPALLADAPAHRAFTVVRVDQVVDALLTQRELFAIPLPRLPPRPLLVDTAQLSPRKSAL 195
            MAN TD +A    G DPQ LL   TR  I+ S +W    FG+SVA +   AA L+ +  +    G +  P+PFLC+ LKLLQL      + ++L Q HFKYA  L AFY RL   P  VY LLEPLLAD+R++ +R     A    AP     T+V +D  VD LL   +   + LPRLP R +LV+T QL  R +AL
Sbjct:    1 MANRTDPSAPTAHGIDPQRLLDAHTRDRIYASAYWREECFGLSVAGVAARAAGLTSMGGSVDGGGGIPAPTPFLCLTLKLLQLGADVDTLRLFLDQRHFKYATALGAFYARLAAPPTLVYGLLEPLLADYRRLRIRGRGGGAA---APV----TLVPMDVWVDGLLRDEDALGVKLPRLPRRGVLVETGQLGGRVTAL 191          
BLAST of Gvermi5723.t1 vs. uniprot
Match: A0A075AYX0_ROZAC (Pre-mRNA-splicing factor 38 n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075AYX0_ROZAC)

HSP 1 Score: 135 bits (340), Expect = 4.560e-36
Identity = 79/195 (40.51%), Postives = 114/195 (58.46%), Query Frame = 0
Query:    1 MANSTDEAALHNLGYDPQHLLPPITRSSIHLSPFWNRHLFGVSVADLVPLAASLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTAEIAVYLHQPHFKYARLLAAFYVRLMEAPPAVYRLLEPLLADFRKVVVRASDVPALLADAPAHRAFTVVRVDQVVDALLTQRELFAIPLPRLPPRPLLVDTAQLSPRKSAL 195
            MAN T   A    G DPQ L+  ITR+ I+ S +W  + FG+++  LV  A  L H+    G  + P+PFLC++LK+LQLAPT   +  ++    +KY R L  FY+RL+ +   +YR LEPLLAD+RK+ +R  D           R++T++ +D+ VD LLTQ   F   LPR+  R +L +T QL+ R S L
Sbjct:    1 MANRTAVDAFQVHGVDPQFLIEKITRTRIYESQYWKENCFGLNIETLVDKAVKLDHIGGLFGT-NIPTPFLCLVLKMLQLAPTKDIVFEFVRNGDYKYVRALGVFYLRLVGSGLEIYRELEPLLADYRKLRLRNKD-----------RSYTIIHMDEFVDELLTQERTFDTILPRIVKRHVLAETGQLNFRTSLL 183          
BLAST of Gvermi5723.t1 vs. uniprot
Match: A0A5A8D3W8_CAFRO (Pre-mRNA-splicing factor 38 n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D3W8_CAFRO)

HSP 1 Score: 132 bits (333), Expect = 4.020e-35
Identity = 75/196 (38.27%), Postives = 109/196 (55.61%), Query Frame = 0
Query:    1 MANSTDEAALHNLGYDPQHLLPPITRSSIHLSPFWNRHLFGVSVADLVPLAASLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTAEIAVYLHQPHFKYARLLAAFYVRLMEAPPAVYRLLEPLLADFRKVVVRASDVPALLADAPAHRAFTVVRVDQVVDALLTQRELFAIPLPRLPPRPLLVDTAQLSPRKSALA 196
            MAN TD  A +  G DPQ+L+  + R  I  S +W  H FG+    L+  A  + H+ +T G +  P+PF+C++LKLLQ+ P    +  Y+ Q   KY R L AFY RL+  P  VY++LEPL  DFRK+ VR+               + +  +D++VD LL +   + + LP LP R LL  + +L+PR S LA
Sbjct:    1 MANRTDVLAQNVHGTDPQNLVEHLLRQRIQNSRYWKEHCFGLDAETLIEKAVKIDHIGSTFGGIRKPTPFICLVLKLLQIQPPLDAVIEYVKQDEHKYLRALGAFYTRLVGDPVQVYKVLEPLYNDFRKLAVRSPS------------GWELSHMDELVDMLLREEFAWELTLPMLPRRRLLESSGKLAPRVSLLA 184          
BLAST of Gvermi5723.t1 vs. uniprot
Match: A0A0L6VIQ5_9BASI (Pre-mRNA-splicing factor 38 n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6VIQ5_9BASI)

HSP 1 Score: 133 bits (334), Expect = 7.750e-35
Identity = 82/198 (41.41%), Postives = 114/198 (57.58%), Query Frame = 0
Query:    1 MANSTDEAALHNLGYDPQHLLPPITRSSIHLSPFWNRHLFGVSVADLVPLAA-SLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTAEIAVYLHQPHFKYARLLAAFYVRLMEAPPAVYRLLEPLLADFRKVVVRASDVPALLADAPAHRAFTVVRVDQVVDALLTQRELFAIPLPRLPPRPLLVDTAQLSPRKSALAL 197
            MAN+T   AL   G +PQ L+  I RS I+ S +W    FG++   ++  A   L++L++T  A   PSPF+C+LLKLLQL P    I  YL    FKY R LAAFYVRL   P  VY+ LEP+L D+RK+ +R  D            ++ ++  D+ +D LLT+  +F + LPRL  R +L +   L PRKS LA+
Sbjct:    1 MANTTARGALSIHGTNPQFLIDKILRSRIYESEYWKESCFGLTAESIIDKAVFDLNYLASTFTANLRPSPFICLLLKLLQLQPEKEIILEYLRAEEFKYLRALAAFYVRLTFTPINVYQTLEPMLQDYRKLRIRELD-----------GSYGLMTFDEFIDKLLTETIVFEVVLPRLTSRKVLEELESLPPRKSTLAV 187          
BLAST of Gvermi5723.t1 vs. uniprot
Match: A0A060TAZ0_BLAAD (Pre-mRNA-splicing factor 38 n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060TAZ0_BLAAD)

HSP 1 Score: 130 bits (326), Expect = 1.860e-34
Identity = 75/182 (41.21%), Postives = 105/182 (57.69%), Query Frame = 0
Query:   14 GYDPQHLLPPITRSSIHLSPFWNRHLFGVSVADLVPLAASLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTAEIAVYLHQPHFKYARLLAAFYVRLMEAPPAVYRLLEPLLADFRKVVVRASDVPALLADAPAHRAFTVVRVDQVVDALLTQRELFAIPLPRLPPRPLLVDTAQLSPRKSAL 195
            G +P  L+  ITR  ++ S +W    FG+  A L   A  L  +   +G+  T SPFLC+L K++QL+P    I  YL+Q  FKY R LAA Y+R+   P  V++LLEPLLAD+RK+ +R+ +              T+  +D+ +DALLTQ+ +    LPRLP R  L D  QL PR+SAL
Sbjct:   18 GVNPATLIEKITRERMYESRYWKEECFGLDAATLCDRAVELKFIGGNYGSNLTVSPFLCLLFKMIQLSPEREIILEYLNQEDFKYLRALAAMYIRIFFRPHEVFQLLEPLLADYRKLRLRSGN------------QVTLTHMDEFIDALLTQQRVCDTTLPRLPKRIALEDMEQLEPRESAL 187          
BLAST of Gvermi5723.t1 vs. uniprot
Match: A0A5A8CJ88_CAFRO (Pre-mRNA-splicing factor 38 n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CJ88_CAFRO)

HSP 1 Score: 132 bits (333), Expect = 1.910e-34
Identity = 75/196 (38.27%), Postives = 109/196 (55.61%), Query Frame = 0
Query:    1 MANSTDEAALHNLGYDPQHLLPPITRSSIHLSPFWNRHLFGVSVADLVPLAASLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTAEIAVYLHQPHFKYARLLAAFYVRLMEAPPAVYRLLEPLLADFRKVVVRASDVPALLADAPAHRAFTVVRVDQVVDALLTQRELFAIPLPRLPPRPLLVDTAQLSPRKSALA 196
            MAN TD  A +  G DPQ+L+  + R  I  S +W  H FG+    L+  A  + H+ +T G +  P+PF+C++LKLLQ+ P    +  Y+ Q   KY R L AFY RL+  P  VY++LEPL  DFRK+ VR+               + +  +D++VD LL +   + + LP LP R LL  + +L+PR S LA
Sbjct:    1 MANRTDVLAQNVHGTDPQNLVEHLLRQRIQNSRYWKEHCFGLDAETLIEKAVKIDHIGSTFGGIRKPTPFICLVLKLLQIQPPLDAVIEYVKQDEHKYLRALGAFYTRLVGDPVQVYKVLEPLYNDFRKLAVRSPS------------GWELSHMDELVDMLLREEFAWELTLPMLPRRRLLESSGKLAPRVSLLA 184          
The following BLAST results are available for this feature:
BLAST of Gvermi5723.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ISM9_9FLOR1.560e-9874.62Pre-mRNA-splicing factor 38 n=1 Tax=Gracilariopsis... [more]
R7QB68_CHOCR3.010e-5354.08Pre-mRNA-splicing factor 38 n=1 Tax=Chondrus crisp... [more]
M2XT21_GALSU1.490e-3841.54Pre-mRNA-splicing factor 38 n=1 Tax=Galdieria sulp... [more]
A0A316ZBR8_9BASI5.830e-3742.05Pre-mRNA-splicing factor 38 n=1 Tax=Tilletiopsis w... [more]
A0A1X6NV66_PORUM1.090e-3643.94Pre-mRNA-splicing factor 38 n=1 Tax=Porphyra umbil... [more]
A0A075AYX0_ROZAC4.560e-3640.51Pre-mRNA-splicing factor 38 n=1 Tax=Rozella allomy... [more]
A0A5A8D3W8_CAFRO4.020e-3538.27Pre-mRNA-splicing factor 38 n=1 Tax=Cafeteria roen... [more]
A0A0L6VIQ5_9BASI7.750e-3541.41Pre-mRNA-splicing factor 38 n=1 Tax=Puccinia sorgh... [more]
A0A060TAZ0_BLAAD1.860e-3441.21Pre-mRNA-splicing factor 38 n=1 Tax=Blastobotrys a... [more]
A0A5A8CJ88_CAFRO1.910e-3438.27Pre-mRNA-splicing factor 38 n=2 Tax=Cafeteria roen... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005037Pre-mRNA-splicing factor 38PFAMPF03371PRP38coord: 15..179
e-value: 4.9E-41
score: 140.5
IPR005037Pre-mRNA-splicing factor 38PANTHERPTHR23142UNCHARACTERIZEDcoord: 1..195
NoneNo IPR availablePANTHERPTHR23142:SF1PRE-MRNA-SPLICING FACTOR 38Acoord: 1..195

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:1269203..1269796 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5723.t1Gvermi5723.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_776 1269203..1269796 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5723.t1 ID=Gvermi5723.t1|Name=Gvermi5723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=198bp
MANSTDEAALHNLGYDPQHLLPPITRSSIHLSPFWNRHLFGVSVADLVPL
AASLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTAEIAVYLHQPHFKYAR
LLAAFYVRLMEAPPAVYRLLEPLLADFRKVVVRASDVPALLADAPAHRAF
TVVRVDQVVDALLTQRELFAIPLPRLPPRPLLVDTAQLSPRKSALAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005037PRP38