Gvermi5723.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5723.t1
Unique NameGvermi5723.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:1269203..1269796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703323.1
Preferred namePRPF38A
PFAMsPRP38,PRP38_assoc
Max annot lvl2759|Eukaryota
KEGG koko:K12849,ko:K12851
KEGG Pathwayko03040,map03040
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007346,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010389,GO:0010467,GO:0010564,GO:0012505,GO:0016020,GO:0016070,GO:0016071,GO:0030532,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0070013,GO:0071011,GO:0071704,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901987,GO:1901990,GO:1902749,GO:1990904
Evalue6.53e-40
EggNOG OGsKOG2889@1|root,KOG2889@2759|Eukaryota
DescriptionRNA splicing
COG categoryBK
BRITEko00000,ko00001,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5723Gvermi5723Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_776 1269203..1269796 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5723.t1.stop1Gvermi5723.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_776 1269203..1269205 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5723.t1.CDS1Gvermi5723.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 1269203..1269796 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5723.t1.exon1Gvermi5723.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 1269203..1269796 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5723.t1.start1Gvermi5723.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_776 1269794..1269796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5723.t1Gvermi5723.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_776 1269203..1269796 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5723.t1 ID=Gvermi5723.t1|Name=Gvermi5723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=198bp
MANSTDEAALHNLGYDPQHLLPPITRSSIHLSPFWNRHLFGVSVADLVPL
AASLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTAEIAVYLHQPHFKYAR
LLAAFYVRLMEAPPAVYRLLEPLLADFRKVVVRASDVPALLADAPAHRAF
TVVRVDQVVDALLTQRELFAIPLPRLPPRPLLVDTAQLSPRKSALAL*
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spliced messenger RNA

>Gvermi5723.t1 ID=Gvermi5723.t1|Name=Gvermi5723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=594bp|location=Sequence derived from alignment at ScGOVlb_776:1269203..1269796- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAACAGCACCGACGAGGCGGCGCTGCACAACCTCGGCTACGACCC
GCAGCACCTGTTGCCGCCCATCACGCGCTCGTCCATCCACCTGAGCCCGT
TCTGGAACCGCCACCTGTTCGGCGTCTCCGTGGCCGACCTGGTGCCGCTG
GCCGCCTCCCTCTCGCACCTGTCCGCCACGCACGGCGCCATGCACACGCC
CAGCCCGTTCCTGTGCATGCTGCTCAAGCTGCTGCAGCTGGCGCCCACGA
CGGCCGAGATCGCCGTGTACCTGCACCAGCCGCACTTCAAGTACGCGCGC
CTGCTGGCCGCCTTCTACGTGCGCCTCATGGAGGCGCCGCCCGCCGTGTA
CCGCCTGCTGGAGCCGCTGCTGGCCGACTTTCGCAAGGTCGTCGTGCGCG
CCTCCGACGTGCCCGCGCTGCTCGCCGACGCCCCCGCGCACCGCGCCTTC
ACCGTCGTGCGCGTGGACCAGGTCGTGGACGCGCTGCTCACGCAGCGCGA
GCTGTTCGCCATCCCCCTGCCACGCCTTCCACCGCGCCCGCTGCTGGTGG
ACACGGCGCAGCTTTCGCCGAGAAAGTCCGCCCTCGCGCTGTAG
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protein sequence of Gvermi5723.t1

>Gvermi5723.t1 ID=Gvermi5723.t1|Name=Gvermi5723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=198bp
MANSTDEAALHNLGYDPQHLLPPITRSSIHLSPFWNRHLFGVSVADLVPL
AASLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTAEIAVYLHQPHFKYAR
LLAAFYVRLMEAPPAVYRLLEPLLADFRKVVVRASDVPALLADAPAHRAF
TVVRVDQVVDALLTQRELFAIPLPRLPPRPLLVDTAQLSPRKSALAL*
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mRNA from alignment at ScGOVlb_776:1269203..1269796-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5723.t1 ID=Gvermi5723.t1|Name=Gvermi5723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=594bp|location=Sequence derived from alignment at ScGOVlb_776:1269203..1269796- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCAACAGCACCGACGAGGCGGCGCTGCACAACCTCGGCTACGACCC
GCAGCACCTGTTGCCGCCCATCACGCGCTCGTCCATCCACCTGAGCCCGT
TCTGGAACCGCCACCTGTTCGGCGTCTCCGTGGCCGACCTGGTGCCGCTG
GCCGCCTCCCTCTCGCACCTGTCCGCCACGCACGGCGCCATGCACACGCC
CAGCCCGTTCCTGTGCATGCTGCTCAAGCTGCTGCAGCTGGCGCCCACGA
CGGCCGAGATCGCCGTGTACCTGCACCAGCCGCACTTCAAGTACGCGCGC
CTGCTGGCCGCCTTCTACGTGCGCCTCATGGAGGCGCCGCCCGCCGTGTA
CCGCCTGCTGGAGCCGCTGCTGGCCGACTTTCGCAAGGTCGTCGTGCGCG
CCTCCGACGTGCCCGCGCTGCTCGCCGACGCCCCCGCGCACCGCGCCTTC
ACCGTCGTGCGCGTGGACCAGGTCGTGGACGCGCTGCTCACGCAGCGCGA
GCTGTTCGCCATCCCCCTGCCACGCCTTCCACCGCGCCCGCTGCTGGTGG
ACACGGCGCAGCTTTCGCCGAGAAAGTCCGCCCTCGCGCTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_776:1269203..1269796-

>Gvermi5723.t1 ID=Gvermi5723.t1|Name=Gvermi5723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=594bp|location=Sequence derived from alignment at ScGOVlb_776:1269203..1269796- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCAACAGCACCGACGAGGCGGCGCTGCACAACCTCGGCTACGACCC
GCAGCACCTGTTGCCGCCCATCACGCGCTCGTCCATCCACCTGAGCCCGT
TCTGGAACCGCCACCTGTTCGGCGTCTCCGTGGCCGACCTGGTGCCGCTG
GCCGCCTCCCTCTCGCACCTGTCCGCCACGCACGGCGCCATGCACACGCC
CAGCCCGTTCCTGTGCATGCTGCTCAAGCTGCTGCAGCTGGCGCCCACGA
CGGCCGAGATCGCCGTGTACCTGCACCAGCCGCACTTCAAGTACGCGCGC
CTGCTGGCCGCCTTCTACGTGCGCCTCATGGAGGCGCCGCCCGCCGTGTA
CCGCCTGCTGGAGCCGCTGCTGGCCGACTTTCGCAAGGTCGTCGTGCGCG
CCTCCGACGTGCCCGCGCTGCTCGCCGACGCCCCCGCGCACCGCGCCTTC
ACCGTCGTGCGCGTGGACCAGGTCGTGGACGCGCTGCTCACGCAGCGCGA
GCTGTTCGCCATCCCCCTGCCACGCCTTCCACCGCGCCCGCTGCTGGTGG
ACACGGCGCAGCTTTCGCCGAGAAAGTCCGCCCTCGCGCTGTAG
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