Gvermi5624.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5624.t1
Unique NameGvermi5624.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length86
Homology
BLAST of Gvermi5624.t1 vs. uniprot
Match: A0A2V3IPR5_9FLOR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPR5_9FLOR)

HSP 1 Score: 159 bits (402), Expect = 5.030e-49
Identity = 72/84 (85.71%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    2 HLPLGAVPEDTDLQRVRSKWGSDAMEKIQSTDVIEVDGDVAVCNGGGGALGHPIEYIKLYVSDEDAGPQVCKYCGLKFARKNHH 85
            HLPLG VP+DTDL  VRSKWGSDAM+KIQ+TDVIEVDGDVA+CNGGGGALGHPIEYIKL+VSDEDA PQVCKYCGLKF RK+H+
Sbjct:   27 HLPLGVVPDDTDLGSVRSKWGSDAMDKIQNTDVIEVDGDVAICNGGGGALGHPIEYIKLHVSDEDAAPQVCKYCGLKFVRKHHY 110          
BLAST of Gvermi5624.t1 vs. uniprot
Match: R7QQI5_CHOCR (NADH-ubiquinone oxidoreductase subunit iron-sulfur protein 6 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQI5_CHOCR)

HSP 1 Score: 145 bits (367), Expect = 1.160e-43
Identity = 68/84 (80.95%), Postives = 72/84 (85.71%), Query Frame = 0
Query:    1 MHLPLGAVPEDTDLQRVRSKWGSDAMEKIQSTDVIEVDGDVAVCNGGGGALGHPIEYIKLYVSDEDAGPQVCKYCGLKFARKNH 84
            MH PLG+VP  TD + VRSKWGSDAM+KIQ T   EVDGDVA CNGGGGALGHPIEYIKL VSDEDAGPQVCKYCGLKF RK+H
Sbjct:   28 MHQPLGSVPAGTDPELVRSKWGSDAMDKIQETAATEVDGDVAACNGGGGALGHPIEYIKLLVSDEDAGPQVCKYCGLKFLRKHH 111          
BLAST of Gvermi5624.t1 vs. uniprot
Match: A0A7S0T4V0_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T4V0_9RHOD)

HSP 1 Score: 108 bits (270), Expect = 1.580e-28
Identity = 52/84 (61.90%), Postives = 63/84 (75.00%), Query Frame = 0
Query:    1 MHLPLGAVPEDTDLQRVRSKWGSDAMEKIQSTDVIEVDGDVAVCNGGGGALGHPIEYIKLYVSDEDAGPQVCKYCGLKFARKNH 84
            MHLPLG+VP+ TDL  VR KWGS+AM+ IQ    IEV+G+VAVC+GGGGA GHPIEYIKL    +   P VCKYCGL++  K +
Sbjct:   58 MHLPLGSVPDGTDLSVVRHKWGSNAMDLIQQVPPIEVEGNVAVCDGGGGAEGHPIEYIKL----DSPYPAVCKYCGLRYVSKKY 137          
BLAST of Gvermi5624.t1 vs. uniprot
Match: A0A5J4Z2H0_PORPP (NADH dehydrogenase ubiquinone iron-sulfur protein 6, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2H0_PORPP)

HSP 1 Score: 101 bits (252), Expect = 7.200e-26
Identity = 51/85 (60.00%), Postives = 63/85 (74.12%), Query Frame = 0
Query:    2 HLPLGAVPEDTDLQRVRSKWGSDAMEKIQSTDVIEVDGDVAVCNGGGG-ALGHPIEYIKLYVSDEDAGPQVCKYCGLKFARKNHH 85
            HLPLG VPE TD  +V+SKWGS+AM+ IQ    I VDG+V VC+GGG  ++GHPIE+IKL    +   P VCKYCGL++ARKN H
Sbjct:   55 HLPLGQVPEGTDPSQVKSKWGSNAMDMIQQVAPILVDGNVVVCDGGGDPSVGHPIEFIKL----DMPYPAVCKYCGLRYARKNAH 135          
BLAST of Gvermi5624.t1 vs. uniprot
Match: W4FPE3_9STRA (zf-CHCC domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPE3_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.180e-19
Identity = 44/77 (57.14%), Postives = 54/77 (70.13%), Query Frame = 0
Query:   10 EDTDLQRVRSKWGSDAMEKIQSTDVIEVDGDVAVCNGGGGALGHPIEYIKL-YVSDEDAGPQVCKYCGLKFARKNHH 85
            EDT+  R      SDA  +I    V+EVD DVAVC+GGGGALGHP+EYI L  VSD+   PQ CKYCGL++ +K+HH
Sbjct:   49 EDTNRHR------SDAELRIAQVPVVEVDSDVAVCDGGGGALGHPVEYIALNIVSDK---PQTCKYCGLRYKQKHHH 116          
BLAST of Gvermi5624.t1 vs. uniprot
Match: A0A485KN93_9STRA (Aste57867_9463 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KN93_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 8.860e-19
Identity = 45/74 (60.81%), Postives = 51/74 (68.92%), Query Frame = 0
Query:   13 DLQRVRSKWGSDAMEKIQSTDVIEVDGDVAVCNGGGGALGHPIEYIKL-YVSDEDAGPQVCKYCGLKFARKNHH 85
            D+ R RS    DA  +I    VIEVD D AVC+GGGGALGHP+EYI L  VSDE   PQ CKYCGL+F  K+HH
Sbjct:   52 DINRHRS----DAEIRIAQVPVIEVDSDTAVCDGGGGALGHPLEYIALNIVSDE---PQTCKYCGLRFKMKHHH 118          
BLAST of Gvermi5624.t1 vs. uniprot
Match: A0A6G0WCA7_9STRA (zf-CHCC domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCA7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 5.830e-18
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 0
Query:   13 DLQRVRSKWGSDAMEKIQSTDVIEVDGDVAVCNGGGGALGHPIEYIKLYVSDEDAGPQVCKYCGLKFARKNHH 85
            D+ R RS    DA  +I    V+EVD DVAVC+GGGGALGHP+EYI+L    ++  PQ CKYCGL++  K+HH
Sbjct:   45 DINRHRS----DAELRIAKVPVVEVDTDVAVCDGGGGALGHPLEYIQLNTVSKE--PQTCKYCGLRYKMKHHH 111          
BLAST of Gvermi5624.t1 vs. uniprot
Match: A0A024TS26_9STRA (zf-CHCC domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TS26_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 9.670e-18
Identity = 44/77 (57.14%), Postives = 52/77 (67.53%), Query Frame = 0
Query:   10 EDTDLQRVRSKWGSDAMEKIQSTDVIEVDGDVAVCNGGGGALGHPIEYIKLY-VSDEDAGPQVCKYCGLKFARKNHH 85
            EDT+  R      SDA   I    V+EVD DVAVC+GGGGALGHP+EYI L  VSD+   PQ CKYCGL++ +K HH
Sbjct:   48 EDTNRHR------SDAEILIAQVPVVEVDSDVAVCDGGGGALGHPLEYIALNTVSDK---PQTCKYCGLRYKQKPHH 115          
BLAST of Gvermi5624.t1 vs. uniprot
Match: A0A7S2X4R7_PROMC (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2X4R7_PROMC)

HSP 1 Score: 74.7 bits (182), Expect = 2.550e-15
Identity = 38/66 (57.58%), Postives = 44/66 (66.67%), Query Frame = 0
Query:   19 SKWGSDAMEKIQSTDVIEVDGDVAVCNGGGGALGHPIEYIKLYVSDEDAGPQVCKYCGLKFARKNH 84
            +K  SDA   I  TDV  VDG VA+C+GGGG+LGHPIEYIKL     D  P  CKYCGL++  K H
Sbjct:   67 AKHRSDAENLIAQTDVTVVDGPVALCDGGGGSLGHPIEYIKLDNRTPDI-PTECKYCGLRYIMKKH 131          
BLAST of Gvermi5624.t1 vs. uniprot
Match: A0A6H5JR03_9PHAE (zf-CHCC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR03_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 6.400e-15
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 0
Query:   23 SDAMEKIQSTDVIEVDGDVAVCNGGGGALGHPIEYIKLYVSDEDAGPQVCKYCGLKFARKNH 84
            SDA  +I    V+ VDG VA+C+GGGGALGHP++YI+L  +  D GP+ C+YCG+ +  K H
Sbjct:   67 SDAEARIAEVPVVMVDGPVALCDGGGGALGHPLDYIQL--ASPDGGPRACQYCGIMYQMKTH 126          
The following BLAST results are available for this feature:
BLAST of Gvermi5624.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPR5_9FLOR5.030e-4985.71NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
R7QQI5_CHOCR1.160e-4380.95NADH-ubiquinone oxidoreductase subunit iron-sulfur... [more]
A0A7S0T4V0_9RHOD1.580e-2861.90Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
A0A5J4Z2H0_PORPP7.200e-2660.00NADH dehydrogenase ubiquinone iron-sulfur protein ... [more]
W4FPE3_9STRA4.180e-1957.14zf-CHCC domain-containing protein n=4 Tax=Aphanomy... [more]
A0A485KN93_9STRA8.860e-1960.81Aste57867_9463 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0WCA7_9STRA5.830e-1854.79zf-CHCC domain-containing protein n=1 Tax=Aphanomy... [more]
A0A024TS26_9STRA9.670e-1857.14zf-CHCC domain-containing protein n=1 Tax=Aphanomy... [more]
A0A7S2X4R7_PROMC2.550e-1557.58Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A6H5JR03_9PHAE6.400e-1551.61zf-CHCC domain-containing protein n=2 Tax=Ectocarp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.260.40q5lls5 like domainscoord: 32..85
e-value: 5.8E-17
score: 63.1
NoneNo IPR availablePANTHERPTHR13156NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-A SUBUNITcoord: 24..85
IPR019401Zinc finger, CHCC-typePFAMPF10276zf-CHCCcoord: 40..79
e-value: 1.8E-13
score: 50.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:779987..780244 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5624.t1Gvermi5624.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_776 779987..780244 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5624.t1 ID=Gvermi5624.t1|Name=Gvermi5624.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=86bp
MHLPLGAVPEDTDLQRVRSKWGSDAMEKIQSTDVIEVDGDVAVCNGGGGA
LGHPIEYIKLYVSDEDAGPQVCKYCGLKFARKNHH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019401Znf_CHCC