Gvermi161.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi161.t1
Unique NameGvermi161.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length171
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_7513contigScGOVlb_7513:78..590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr31544
PFAMsDAO
Max annot lvl2836|Bacillariophyta
Evalue2.09e-28
EggNOG OGsCOG0665@1|root,2RRAQ@2759|Eukaryota,2XAA0@2836|Bacillariophyta
DescriptionFAD dependent oxidoreductase
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi161Gvermi161Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_7513 78..590 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi161.t1.stop1Gvermi161.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_7513 78..80 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi161.t1.CDS1Gvermi161.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_7513 78..590 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi161.t1.exon1Gvermi161.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_7513 78..590 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi161.t1.start1Gvermi161.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_7513 588..590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi161.t1Gvermi161.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_7513 78..590 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi161.t1 ID=Gvermi161.t1|Name=Gvermi161.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=171bp
MEVDCIDSDNMSGAESVADSTSTDLSAAYESIRKNKAKKGTVVISESEDD
DRLDPGFRIQHVDLDTGELREVPPYTMPGKFLESLAAENEKLETLNGPNG
ANGANGASANSRQVDYSEKTYDGYQDIQQANSRGSRQEELEAMQEARRRN
RLGQEKIDESKVGAQRPDML*
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spliced messenger RNA

>Gvermi161.t1 ID=Gvermi161.t1|Name=Gvermi161.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=513bp|location=Sequence derived from alignment at ScGOVlb_7513:78..590- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGTTGATTGCATTGATTCCGATAACATGTCTGGGGCGGAGAGTGT
AGCAGACTCTACCTCGACAGATTTGAGCGCTGCCTACGAGTCGATTCGAA
AGAACAAAGCGAAGAAGGGAACTGTTGTCATCAGTGAGAGTGAGGACGAC
GACCGACTTGATCCAGGCTTTCGCATTCAACACGTGGACCTCGATACTGG
AGAACTGCGTGAAGTACCTCCCTACACTATGCCCGGTAAATTTCTTGAGT
CGCTGGCCGCTGAAAATGAAAAGCTTGAGACACTAAACGGCCCAAACGGG
GCCAATGGAGCGAACGGTGCTTCTGCTAACAGTCGTCAAGTTGATTACAG
CGAAAAGACCTATGATGGTTATCAGGACATTCAGCAAGCCAACTCGAGGG
GTTCGAGACAGGAAGAGCTCGAGGCTATGCAGGAAGCACGCCGCAGAAAC
CGCCTCGGTCAGGAAAAAATTGACGAAAGCAAGGTTGGAGCCCAGCGTCC
AGATATGCTGTGA
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protein sequence of Gvermi161.t1

>Gvermi161.t1 ID=Gvermi161.t1|Name=Gvermi161.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=171bp
MEVDCIDSDNMSGAESVADSTSTDLSAAYESIRKNKAKKGTVVISESEDD
DRLDPGFRIQHVDLDTGELREVPPYTMPGKFLESLAAENEKLETLNGPNG
ANGANGASANSRQVDYSEKTYDGYQDIQQANSRGSRQEELEAMQEARRRN
RLGQEKIDESKVGAQRPDML*
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mRNA from alignment at ScGOVlb_7513:78..590-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi161.t1 ID=Gvermi161.t1|Name=Gvermi161.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=513bp|location=Sequence derived from alignment at ScGOVlb_7513:78..590- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGTTGATTGCATTGATTCCGATAACATGTCTGGGGCGGAGAGTGT
AGCAGACTCTACCTCGACAGATTTGAGCGCTGCCTACGAGTCGATTCGAA
AGAACAAAGCGAAGAAGGGAACTGTTGTCATCAGTGAGAGTGAGGACGAC
GACCGACTTGATCCAGGCTTTCGCATTCAACACGTGGACCTCGATACTGG
AGAACTGCGTGAAGTACCTCCCTACACTATGCCCGGTAAATTTCTTGAGT
CGCTGGCCGCTGAAAATGAAAAGCTTGAGACACTAAACGGCCCAAACGGG
GCCAATGGAGCGAACGGTGCTTCTGCTAACAGTCGTCAAGTTGATTACAG
CGAAAAGACCTATGATGGTTATCAGGACATTCAGCAAGCCAACTCGAGGG
GTTCGAGACAGGAAGAGCTCGAGGCTATGCAGGAAGCACGCCGCAGAAAC
CGCCTCGGTCAGGAAAAAATTGACGAAAGCAAGGTTGGAGCCCAGCGTCC
AGATATGCTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_7513:78..590-

>Gvermi161.t1 ID=Gvermi161.t1|Name=Gvermi161.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=513bp|location=Sequence derived from alignment at ScGOVlb_7513:78..590- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGTTGATTGCATTGATTCCGATAACATGTCTGGGGCGGAGAGTGT
AGCAGACTCTACCTCGACAGATTTGAGCGCTGCCTACGAGTCGATTCGAA
AGAACAAAGCGAAGAAGGGAACTGTTGTCATCAGTGAGAGTGAGGACGAC
GACCGACTTGATCCAGGCTTTCGCATTCAACACGTGGACCTCGATACTGG
AGAACTGCGTGAAGTACCTCCCTACACTATGCCCGGTAAATTTCTTGAGT
CGCTGGCCGCTGAAAATGAAAAGCTTGAGACACTAAACGGCCCAAACGGG
GCCAATGGAGCGAACGGTGCTTCTGCTAACAGTCGTCAAGTTGATTACAG
CGAAAAGACCTATGATGGTTATCAGGACATTCAGCAAGCCAACTCGAGGG
GTTCGAGACAGGAAGAGCTCGAGGCTATGCAGGAAGCACGCCGCAGAAAC
CGCCTCGGTCAGGAAAAAATTGACGAAAGCAAGGTTGGAGCCCAGCGTCC
AGATATGCTGTGA
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