Gvermi14339.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi14339.t1
Unique NameGvermi14339.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length36
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_7492contigScGOVlb_7492:1..223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi14339Gvermi14339Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_7492 1..223 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14339.t1Gvermi14339.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_7492 1..223 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14339.t1.CDS1Gvermi14339.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_7492 1..80 -
Gvermi14339.t1.CDS2Gvermi14339.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_7492 198..223 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14339.t1.exon1Gvermi14339.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_7492 1..80 -
Gvermi14339.t1.exon2Gvermi14339.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_7492 198..223 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14339.t1.intron1Gvermi14339.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_7492 81..197 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14339.t1.start1Gvermi14339.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_7492 221..223 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi14339.t1 ID=Gvermi14339.t1|Name=Gvermi14339.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=36bp
MSRLSLVITRLAVKYMAQHNQTLRPLAKTRANVHNX
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spliced messenger RNA

>Gvermi14339.t1 ID=Gvermi14339.t1|Name=Gvermi14339.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=106bp|location=Sequence derived from alignment at ScGOVlb_7492:1..223- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGGCTTTCACTAGTAATAACACGACTTGCTGTGAAATACATGGC
TCAACACAATCAAACGCTTCGCCCACTCGCTAAAACGCGCGCAAACGTGC
ACAACA
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protein sequence of Gvermi14339.t1

>Gvermi14339.t1 ID=Gvermi14339.t1|Name=Gvermi14339.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=36bp
MSRLSLVITRLAVKYMAQHNQTLRPLAKTRANVHNX
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mRNA from alignment at ScGOVlb_7492:1..223-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi14339.t1 ID=Gvermi14339.t1|Name=Gvermi14339.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=223bp|location=Sequence derived from alignment at ScGOVlb_7492:1..223- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCGGCTTTCACTAGTAATAACGTACGTCCACTGCATTCACGCATG
CCTGCTTGTGCAAAATGCTTCTTTACTGAAGCGCATGGTACCAAGCTAAC
CAAGCTAACCAAGCTAACTCTGTACCTGCGCACCTTTTGAAAGACGACTT
GCTGTGAAATACATGGCTCAACACAATCAAACGCTTCGCCCACTCGCTAA
AACGCGCGCAAACGTGCACAACA
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Coding sequence (CDS) from alignment at ScGOVlb_7492:1..223-

>Gvermi14339.t1 ID=Gvermi14339.t1|Name=Gvermi14339.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=106bp|location=Sequence derived from alignment at ScGOVlb_7492:1..223- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCGGCTTTCACTAGTAATAACACGACTTGCTGTGAAATACATGGC
TCAACACAATCAAACGCTTCGCCCACTCGCTAAAACGCGCGCAAACGTGC
ACAACA
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