Gvermi13833.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13833.t1
Unique NameGvermi13833.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length260
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:324439..325218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81824.XP_001750192.1
Preferred nameIDI1
PFAMsNUDIX
Max annot lvl33154|Opisthokonta
KEGG rclassRC00455
KEGG koko:K01823
KEGG ReactionR01123
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00095,M00096,M00364,M00365,M00366,M00367
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004452,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005777,GO:0005829,GO:0006066,GO:0006629,GO:0006644,GO:0006694,GO:0006695,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009889,GO:0009987,GO:0010033,GO:0014070,GO:0016114,GO:0016125,GO:0016126,GO:0016853,GO:0016860,GO:0016863,GO:0019216,GO:0019218,GO:0019222,GO:0019637,GO:0030145,GO:0035634,GO:0042221,GO:0042579,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045337,GO:0045338,GO:0045540,GO:0046165,GO:0046490,GO:0046872,GO:0046890,GO:0046914,GO:0050789,GO:0050810,GO:0050896,GO:0062012,GO:0065007,GO:0071704,GO:0080090,GO:0090181,GO:0090407,GO:0106118,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930
Evalue3.15e-70
EggNOG OGsCOG1443@1|root,KOG0142@2759|Eukaryota,38DS6@33154|Opisthokonta
EC5.3.3.2
Descriptionisopentenyl-diphosphate Delta-isomerase
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13833Gvermi13833Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 324439..325218 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13833.t1.stop1Gvermi13833.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 324439..324441 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13833.t1.CDS1Gvermi13833.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 324439..325218 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13833.t1.exon1Gvermi13833.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 324439..325218 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13833.t1.start1Gvermi13833.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 325216..325218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13833.t1Gvermi13833.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 324439..325218 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13833.t1 ID=Gvermi13833.t1|Name=Gvermi13833.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=260bp
MSTTGHSKSRFVHTTPCTYGANQKGDVLAGADPEQVRLMAEQVILVDESD
KVVGSMSKKDSHLVKNGLPLHRAFSVLLFDTKGRMLLQQRADEKVTFPSY
WTNTVCSHPLYRPTELGEKDGGDAVMGAKHAAVRKLSHELGVKKGAMSTQ
DLHFMTKIHYRSECDDNVWGEHELDYIFVAQKDVEVQPEPNEVQKVRFVT
KTELHGMFDDVKTSDSIKITPWFGLIMDNFGWSWWESISEGGMQRLKGLH
DHNIHNYTG*
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spliced messenger RNA

>Gvermi13833.t1 ID=Gvermi13833.t1|Name=Gvermi13833.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=780bp|location=Sequence derived from alignment at ScGOVlb_647:324439..325218- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACAACTGGTCATTCAAAATCGAGATTCGTCCACACTACTCCGTG
TACCTATGGAGCAAATCAAAAGGGAGACGTTCTGGCCGGAGCAGATCCGG
AACAGGTTAGACTAATGGCCGAACAGGTCATCTTGGTAGACGAATCTGAC
AAGGTTGTTGGGAGCATGTCCAAGAAGGACTCCCACCTTGTTAAGAACGG
TCTTCCTCTGCACCGAGCGTTCTCTGTGCTCCTGTTCGACACTAAGGGTA
GAATGCTGTTGCAGCAGCGGGCAGATGAGAAAGTAACCTTTCCTTCGTAC
TGGACAAATACTGTGTGCTCCCATCCGCTGTATCGTCCCACAGAGCTTGG
TGAAAAAGATGGAGGAGATGCAGTGATGGGTGCAAAGCATGCAGCGGTCA
GGAAATTATCTCATGAGCTGGGGGTCAAGAAGGGGGCAATGTCAACCCAA
GATCTTCATTTTATGACCAAGATTCACTATCGGTCTGAGTGCGACGATAA
CGTATGGGGTGAGCATGAATTGGATTATATTTTCGTAGCTCAGAAGGATG
TAGAAGTGCAACCTGAACCGAACGAAGTGCAGAAAGTGCGATTCGTGACA
AAAACAGAACTACACGGTATGTTTGATGACGTAAAGACCTCTGATTCTAT
AAAAATAACTCCATGGTTTGGTCTGATAATGGATAATTTTGGTTGGTCTT
GGTGGGAAAGTATTAGTGAAGGTGGAATGCAACGGCTTAAAGGATTACAT
GACCACAATATTCACAATTATACAGGCTGA
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protein sequence of Gvermi13833.t1

>Gvermi13833.t1 ID=Gvermi13833.t1|Name=Gvermi13833.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=260bp
MSTTGHSKSRFVHTTPCTYGANQKGDVLAGADPEQVRLMAEQVILVDESD
KVVGSMSKKDSHLVKNGLPLHRAFSVLLFDTKGRMLLQQRADEKVTFPSY
WTNTVCSHPLYRPTELGEKDGGDAVMGAKHAAVRKLSHELGVKKGAMSTQ
DLHFMTKIHYRSECDDNVWGEHELDYIFVAQKDVEVQPEPNEVQKVRFVT
KTELHGMFDDVKTSDSIKITPWFGLIMDNFGWSWWESISEGGMQRLKGLH
DHNIHNYTG*
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mRNA from alignment at ScGOVlb_647:324439..325218-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13833.t1 ID=Gvermi13833.t1|Name=Gvermi13833.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=780bp|location=Sequence derived from alignment at ScGOVlb_647:324439..325218- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCACAACTGGTCATTCAAAATCGAGATTCGTCCACACTACTCCGTG
TACCTATGGAGCAAATCAAAAGGGAGACGTTCTGGCCGGAGCAGATCCGG
AACAGGTTAGACTAATGGCCGAACAGGTCATCTTGGTAGACGAATCTGAC
AAGGTTGTTGGGAGCATGTCCAAGAAGGACTCCCACCTTGTTAAGAACGG
TCTTCCTCTGCACCGAGCGTTCTCTGTGCTCCTGTTCGACACTAAGGGTA
GAATGCTGTTGCAGCAGCGGGCAGATGAGAAAGTAACCTTTCCTTCGTAC
TGGACAAATACTGTGTGCTCCCATCCGCTGTATCGTCCCACAGAGCTTGG
TGAAAAAGATGGAGGAGATGCAGTGATGGGTGCAAAGCATGCAGCGGTCA
GGAAATTATCTCATGAGCTGGGGGTCAAGAAGGGGGCAATGTCAACCCAA
GATCTTCATTTTATGACCAAGATTCACTATCGGTCTGAGTGCGACGATAA
CGTATGGGGTGAGCATGAATTGGATTATATTTTCGTAGCTCAGAAGGATG
TAGAAGTGCAACCTGAACCGAACGAAGTGCAGAAAGTGCGATTCGTGACA
AAAACAGAACTACACGGTATGTTTGATGACGTAAAGACCTCTGATTCTAT
AAAAATAACTCCATGGTTTGGTCTGATAATGGATAATTTTGGTTGGTCTT
GGTGGGAAAGTATTAGTGAAGGTGGAATGCAACGGCTTAAAGGATTACAT
GACCACAATATTCACAATTATACAGGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_647:324439..325218-

>Gvermi13833.t1 ID=Gvermi13833.t1|Name=Gvermi13833.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=780bp|location=Sequence derived from alignment at ScGOVlb_647:324439..325218- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCACAACTGGTCATTCAAAATCGAGATTCGTCCACACTACTCCGTG
TACCTATGGAGCAAATCAAAAGGGAGACGTTCTGGCCGGAGCAGATCCGG
AACAGGTTAGACTAATGGCCGAACAGGTCATCTTGGTAGACGAATCTGAC
AAGGTTGTTGGGAGCATGTCCAAGAAGGACTCCCACCTTGTTAAGAACGG
TCTTCCTCTGCACCGAGCGTTCTCTGTGCTCCTGTTCGACACTAAGGGTA
GAATGCTGTTGCAGCAGCGGGCAGATGAGAAAGTAACCTTTCCTTCGTAC
TGGACAAATACTGTGTGCTCCCATCCGCTGTATCGTCCCACAGAGCTTGG
TGAAAAAGATGGAGGAGATGCAGTGATGGGTGCAAAGCATGCAGCGGTCA
GGAAATTATCTCATGAGCTGGGGGTCAAGAAGGGGGCAATGTCAACCCAA
GATCTTCATTTTATGACCAAGATTCACTATCGGTCTGAGTGCGACGATAA
CGTATGGGGTGAGCATGAATTGGATTATATTTTCGTAGCTCAGAAGGATG
TAGAAGTGCAACCTGAACCGAACGAAGTGCAGAAAGTGCGATTCGTGACA
AAAACAGAACTACACGGTATGTTTGATGACGTAAAGACCTCTGATTCTAT
AAAAATAACTCCATGGTTTGGTCTGATAATGGATAATTTTGGTTGGTCTT
GGTGGGAAAGTATTAGTGAAGGTGGAATGCAACGGCTTAAAGGATTACAT
GACCACAATATTCACAATTATACAGGCTGA
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