Gvermi13898.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13898.t1
Unique NameGvermi13898.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length224
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:753935..754606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog573413.Spirs_1682
PFAMsACT_6
Max annot lvl203691|Spirochaetes
KEGG koko:K03567
KEGG Pathwayko02026,map02026
Evalue2.51e-18
EggNOG OGsCOG2716@1|root,COG2716@2|Bacteria,2JAIX@203691|Spirochaetes
DescriptionACT domain
COG categoryE
BRITEko00000,ko00001,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13898Gvermi13898Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 753935..754606 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13898.t1.start1Gvermi13898.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 753935..753937 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13898.t1.CDS1Gvermi13898.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 753935..754606 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13898.t1.exon1Gvermi13898.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 753935..754606 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13898.t1.stop1Gvermi13898.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 754604..754606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13898.t1Gvermi13898.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 753935..754606 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13898.t1 ID=Gvermi13898.t1|Name=Gvermi13898.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=224bp
MSLASRLPALLRSRATPAASVARFTTIACSTQPTRTPEPATAADADPRPH
HAVVSVAGRDRIGIVNTFTNAVEKYKANIEESKMAILGGDFAMIVYISLE
KDADAVDLERLLHEQLPEFSISLRTTTAPADENPEEPMWRISVEAPDQPG
IASAVSQALATHGGHVHEMETETSTAPFAGYALFILNGRVSMADAELDKI
SEALTMVEEKFGASITLDQISKT*
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spliced messenger RNA

>Gvermi13898.t1 ID=Gvermi13898.t1|Name=Gvermi13898.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=672bp|location=Sequence derived from alignment at ScGOVlb_647:753935..754606+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTTGCTTCCAGACTCCCCGCGCTGCTTCGCTCGCGTGCCACGCC
AGCTGCCTCGGTAGCCCGCTTTACCACCATTGCGTGCTCGACGCAGccga
cacggacgcccgagcccgccaccgccgccgatgccgacccGCGTCCTCAC
CATGCCGTTGTCTCTGTCGCCGGTCGGGATCGTATCGGGATCGTCAACAC
CTTCACCAACGCCGTCGAGAAGTACAAGGCAAATATTGAGGAATCAAAAA
TGGCCATTCTCGGCGGCGACTTCGCAATGATTGTGTACATCAGCTTGGAG
AAGGACGCCGACGCAGTGGATTTGGAGAGATTGCTGCACGAGCAGTTGCC
CGAATTTTCCATCTCGTTGCGCACGACCACAGCTCCCGCCGACGAGAATC
CGGAGGAGCCCATGTGGAGAATCTCCGTTGAGGCCCCAGACCAGCCTGGC
ATTGCTTCCGCAGTATCGCAGGCGCTGGCTACGCATGGGGGCCATGTCCA
TGAGATGGAAACTGAGACGAGCACAGCCCCGTTTGCAGGCTATGCGCTCT
TCATTCTCAACGGGCGTGTCAGCATGGCCGATGCCGAGCTTGACAAGATC
TCCGAGGCCCTCACAATGGTAGAAGAGAAATTTGGAGCCTCCATCACTCT
TGACCAAATTTCAAAGACCTAG
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protein sequence of Gvermi13898.t1

>Gvermi13898.t1 ID=Gvermi13898.t1|Name=Gvermi13898.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=224bp
MSLASRLPALLRSRATPAASVARFTTIACSTQPTRTPEPATAADADPRPH
HAVVSVAGRDRIGIVNTFTNAVEKYKANIEESKMAILGGDFAMIVYISLE
KDADAVDLERLLHEQLPEFSISLRTTTAPADENPEEPMWRISVEAPDQPG
IASAVSQALATHGGHVHEMETETSTAPFAGYALFILNGRVSMADAELDKI
SEALTMVEEKFGASITLDQISKT*
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mRNA from alignment at ScGOVlb_647:753935..754606+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13898.t1 ID=Gvermi13898.t1|Name=Gvermi13898.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=672bp|location=Sequence derived from alignment at ScGOVlb_647:753935..754606+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCTTGCTTCCAGACTCCCCGCGCTGCTTCGCTCGCGTGCCACGCC
AGCTGCCTCGGTAGCCCGCTTTACCACCATTGCGTGCTCGACGCAGccga
cacggacgcccgagcccgccaccgccgccgatgccgacccGCGTCCTCAC
CATGCCGTTGTCTCTGTCGCCGGTCGGGATCGTATCGGGATCGTCAACAC
CTTCACCAACGCCGTCGAGAAGTACAAGGCAAATATTGAGGAATCAAAAA
TGGCCATTCTCGGCGGCGACTTCGCAATGATTGTGTACATCAGCTTGGAG
AAGGACGCCGACGCAGTGGATTTGGAGAGATTGCTGCACGAGCAGTTGCC
CGAATTTTCCATCTCGTTGCGCACGACCACAGCTCCCGCCGACGAGAATC
CGGAGGAGCCCATGTGGAGAATCTCCGTTGAGGCCCCAGACCAGCCTGGC
ATTGCTTCCGCAGTATCGCAGGCGCTGGCTACGCATGGGGGCCATGTCCA
TGAGATGGAAACTGAGACGAGCACAGCCCCGTTTGCAGGCTATGCGCTCT
TCATTCTCAACGGGCGTGTCAGCATGGCCGATGCCGAGCTTGACAAGATC
TCCGAGGCCCTCACAATGGTAGAAGAGAAATTTGGAGCCTCCATCACTCT
TGACCAAATTTCAAAGACCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_647:753935..754606+

>Gvermi13898.t1 ID=Gvermi13898.t1|Name=Gvermi13898.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=672bp|location=Sequence derived from alignment at ScGOVlb_647:753935..754606+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCTTGCTTCCAGACTCCCCGCGCTGCTTCGCTCGCGTGCCACGCC
AGCTGCCTCGGTAGCCCGCTTTACCACCATTGCGTGCTCGACGCAGccga
cacggacgcccgagcccgccaccgccgccgatgccgacccGCGTCCTCAC
CATGCCGTTGTCTCTGTCGCCGGTCGGGATCGTATCGGGATCGTCAACAC
CTTCACCAACGCCGTCGAGAAGTACAAGGCAAATATTGAGGAATCAAAAA
TGGCCATTCTCGGCGGCGACTTCGCAATGATTGTGTACATCAGCTTGGAG
AAGGACGCCGACGCAGTGGATTTGGAGAGATTGCTGCACGAGCAGTTGCC
CGAATTTTCCATCTCGTTGCGCACGACCACAGCTCCCGCCGACGAGAATC
CGGAGGAGCCCATGTGGAGAATCTCCGTTGAGGCCCCAGACCAGCCTGGC
ATTGCTTCCGCAGTATCGCAGGCGCTGGCTACGCATGGGGGCCATGTCCA
TGAGATGGAAACTGAGACGAGCACAGCCCCGTTTGCAGGCTATGCGCTCT
TCATTCTCAACGGGCGTGTCAGCATGGCCGATGCCGAGCTTGACAAGATC
TCCGAGGCCCTCACAATGGTAGAAGAGAAATTTGGAGCCTCCATCACTCT
TGACCAAATTTCAAAGACCTAG
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