Gvermi13843.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13843.t1
Unique Name	Gvermi13843.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	429

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_647	contig	ScGOVlb_647:346037..347323 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702954.1
Preferred name	EIF3M
PFAMs	PCI
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15030
GOs	GO:0000003,GO:0001732,GO:0002020,GO:0002181,GO:0002183,GO:0002790,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0005852,GO:0005856,GO:0006412,GO:0006413,GO:0006508,GO:0006518,GO:0006807,GO:0006810,GO:0006996,GO:0007030,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009306,GO:0009653,GO:0009893,GO:0009987,GO:0010033,GO:0010256,GO:0010467,GO:0010604,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016282,GO:0016485,GO:0019222,GO:0019538,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030162,GO:0031323,GO:0031325,GO:0031369,GO:0031638,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0032991,GO:0033036,GO:0033993,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042886,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043280,GO:0043281,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0045862,GO:0046677,GO:0046903,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048522,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051604,GO:0051704,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070864,GO:0070865,GO:0070887,GO:0070993,GO:0071236,GO:0071310,GO:0071396,GO:0071541,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0089720,GO:0097202,GO:0097305,GO:0097306,GO:0097307,GO:0097308,GO:1900117,GO:1900119,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901701,GO:1990904,GO:2000116,GO:2001056,GO:2001270,GO:2001272
Evalue	6.54e-49
EggNOG OGs	KOG2753@1\|root,KOG2753@2759\|Eukaryota
Description	translation initiation factor activity
COG category	J
BRITE	ko00000,ko03012

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13843	Gvermi13843	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_647 346037..347323 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13843.t1.start1	Gvermi13843.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_647 346037..346039 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13843.t1.CDS1	Gvermi13843.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_647 346037..347323 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13843.t1.exon1	Gvermi13843.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_647 346037..347323 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13843.t1.stop1	Gvermi13843.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_647 347321..347323 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13843.t1	Gvermi13843.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_647 346037..347323 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_647:346037..347323+
coding sequence from alignment at ScGOVlb_647:346037..347323+

mRNA sequence

>Gvermi13843.t1 ID=Gvermi13843.t1|Name=Gvermi13843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=429bp
MVAPISDDVVTNGVHDNGPIALPEDDVDDQDLKVLRTELAAAAKYLQSFI
QRDGLHDSIVDAEAAGDALGATNKLADAFIEALNSPEDPTTAGNLEGCMQ
ELLVWVKKRCAINDDLVDKICTGLCDGVSNGELRLRCMALLYNFVGEENH
DKRFTLLLATIKLAAQAGLIPKISDTVMPNIDSFLRQWETPVRQKRQMYK
VCYESLKSADMAAQAFAFNVKQLSLYNGASEQELRDAQDSTIDVIVQAVR
LPKLYRFDTLLELDAVKRFGNLDGDFKLLHELIWIFVRDDLAVFTDFKAK
NEHLLKKHHINVSVAEDKMRLLTFASLGIDSQDLTYDMIASALQIPQDQV
EDWVIRAISSGLVDGKINQLKSSVAIYRSTQRMFTREEWQPLSERINIWK
ENIGELLGALRETRKASTTAAAMASGLE*

spliced messenger RNA

>Gvermi13843.t1 ID=Gvermi13843.t1|Name=Gvermi13843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at ScGOVlb_647:346037..347323+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCCCCCATCAGCGACGACGTCGTCACAAACGGCGTCCACGACAA
CGGTCCAATCGCGCTGCCCGAAGACGACGTCGATGACCAGGATCTCAAAG
TTCTTCGCACTGAACTCGCCGCCGCCGCCAAGTACCTGCAGTCTTTTATC
CAAAGAGACGGTCTGCATGACTCAATAGTGGACGCCGAAGCCGCCGGCGA
TGCCCTCGGCGCCACAAACAAGCTCGCCGACGCCTTCATCGAGGCGCTCA
ACTCCCCGGAAGATCCGACCACGGCCGGCAACTTGGAGGGTTGCATGCAG
GAGCTTTTGGTCTGGGTCAAGAAGCGATGCGCCATCAACGACGATCTGGT
CGACAAAATTTGCACCGGCCTCTGCGACGGCGTTTCGAACGGCGAGCTGC
GGCTGCGATGTATGGCGCTGCTCTACAATTTTGTGGGCGAAGAGAACCAC
GACAAGCGCTTCACGCTGCTCCTGGCCACAATCAAGCTCGCGGCCCAAGC
AGGCCTAATCCCAAAGATCAGCGACACCGTTATGCCAAACATAGACTCGT
TTTTACGTCAGTGGGAAACACCGGTGCGTCAGAAACGACAAATGTACAAG
GTTTGCTACGAGTCTTTGAAATCTGCCGACATGGCGGCACAGGCGTTCGC
GTTTAACGTCAAACAGCTCAGTTTGTACAACGGCGCTTCGGAGCAAGAGT
TGCGCGACGCCCAGGACTCTACCATTGATGTCATCGTCCAGGCCGTGCGC
TTGCCCAAGCTTTACCGCTTCGACACGTTGCTGGAACTGGATGCCGTCAA
GAGGTTTGGAAACTTGGACGGAGACTTCAAATTACTGCACGAGCTGATTT
GGATCTTTGTTCGCGACGATCTTGCAGTATTTACCGACTTCAAGGCCAAA
AACGAACACTTGCTCAAAAAGCACCACATCAACGTGAGCGTCGCAGAGGA
CAAGATGAGACTGCTTACGTTTGCTTCTCTGGGAATTGATTCTCAGGACC
TGACGTACGATATGATTGCCAGCGCATTACAAATTCCTCAAGACCAGGTC
GAAGATTGGGTCATCCGTGCGATCAGCTCCGGTCTAGTGGACGGCAAGAT
CAATCAACTCAAGTCTTCTGTGGCCATATATCGATCTACACAGAGAATGT
TCACCAGAGAGGAGTGGCAGCCACTGTCCGAGCGCATCAATATCTGGAAG
GAAAATATTGGGGAACTGTTGGGAGCGCTTCGCGAAACGAGGAAGGCATC
AACGACGGCCGCAGCAATGGCGTCCGGTTTAGAATGA

protein sequence of Gvermi13843.t1

>Gvermi13843.t1 ID=Gvermi13843.t1|Name=Gvermi13843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=429bp
MVAPISDDVVTNGVHDNGPIALPEDDVDDQDLKVLRTELAAAAKYLQSFI
QRDGLHDSIVDAEAAGDALGATNKLADAFIEALNSPEDPTTAGNLEGCMQ
ELLVWVKKRCAINDDLVDKICTGLCDGVSNGELRLRCMALLYNFVGEENH
DKRFTLLLATIKLAAQAGLIPKISDTVMPNIDSFLRQWETPVRQKRQMYK
VCYESLKSADMAAQAFAFNVKQLSLYNGASEQELRDAQDSTIDVIVQAVR
LPKLYRFDTLLELDAVKRFGNLDGDFKLLHELIWIFVRDDLAVFTDFKAK
NEHLLKKHHINVSVAEDKMRLLTFASLGIDSQDLTYDMIASALQIPQDQV
EDWVIRAISSGLVDGKINQLKSSVAIYRSTQRMFTREEWQPLSERINIWK
ENIGELLGALRETRKASTTAAAMASGLE*

mRNA from alignment at ScGOVlb_647:346037..347323+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13843.t1 ID=Gvermi13843.t1|Name=Gvermi13843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at ScGOVlb_647:346037..347323+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGCCCCCATCAGCGACGACGTCGTCACAAACGGCGTCCACGACAA
CGGTCCAATCGCGCTGCCCGAAGACGACGTCGATGACCAGGATCTCAAAG
TTCTTCGCACTGAACTCGCCGCCGCCGCCAAGTACCTGCAGTCTTTTATC
CAAAGAGACGGTCTGCATGACTCAATAGTGGACGCCGAAGCCGCCGGCGA
TGCCCTCGGCGCCACAAACAAGCTCGCCGACGCCTTCATCGAGGCGCTCA
ACTCCCCGGAAGATCCGACCACGGCCGGCAACTTGGAGGGTTGCATGCAG
GAGCTTTTGGTCTGGGTCAAGAAGCGATGCGCCATCAACGACGATCTGGT
CGACAAAATTTGCACCGGCCTCTGCGACGGCGTTTCGAACGGCGAGCTGC
GGCTGCGATGTATGGCGCTGCTCTACAATTTTGTGGGCGAAGAGAACCAC
GACAAGCGCTTCACGCTGCTCCTGGCCACAATCAAGCTCGCGGCCCAAGC
AGGCCTAATCCCAAAGATCAGCGACACCGTTATGCCAAACATAGACTCGT
TTTTACGTCAGTGGGAAACACCGGTGCGTCAGAAACGACAAATGTACAAG
GTTTGCTACGAGTCTTTGAAATCTGCCGACATGGCGGCACAGGCGTTCGC
GTTTAACGTCAAACAGCTCAGTTTGTACAACGGCGCTTCGGAGCAAGAGT
TGCGCGACGCCCAGGACTCTACCATTGATGTCATCGTCCAGGCCGTGCGC
TTGCCCAAGCTTTACCGCTTCGACACGTTGCTGGAACTGGATGCCGTCAA
GAGGTTTGGAAACTTGGACGGAGACTTCAAATTACTGCACGAGCTGATTT
GGATCTTTGTTCGCGACGATCTTGCAGTATTTACCGACTTCAAGGCCAAA
AACGAACACTTGCTCAAAAAGCACCACATCAACGTGAGCGTCGCAGAGGA
CAAGATGAGACTGCTTACGTTTGCTTCTCTGGGAATTGATTCTCAGGACC
TGACGTACGATATGATTGCCAGCGCATTACAAATTCCTCAAGACCAGGTC
GAAGATTGGGTCATCCGTGCGATCAGCTCCGGTCTAGTGGACGGCAAGAT
CAATCAACTCAAGTCTTCTGTGGCCATATATCGATCTACACAGAGAATGT
TCACCAGAGAGGAGTGGCAGCCACTGTCCGAGCGCATCAATATCTGGAAG
GAAAATATTGGGGAACTGTTGGGAGCGCTTCGCGAAACGAGGAAGGCATC
AACGACGGCCGCAGCAATGGCGTCCGGTTTAGAATGA

Coding sequence (CDS) from alignment at ScGOVlb_647:346037..347323+

>Gvermi13843.t1 ID=Gvermi13843.t1|Name=Gvermi13843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1287bp|location=Sequence derived from alignment at ScGOVlb_647:346037..347323+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGCCCCCATCAGCGACGACGTCGTCACAAACGGCGTCCACGACAA
CGGTCCAATCGCGCTGCCCGAAGACGACGTCGATGACCAGGATCTCAAAG
TTCTTCGCACTGAACTCGCCGCCGCCGCCAAGTACCTGCAGTCTTTTATC
CAAAGAGACGGTCTGCATGACTCAATAGTGGACGCCGAAGCCGCCGGCGA
TGCCCTCGGCGCCACAAACAAGCTCGCCGACGCCTTCATCGAGGCGCTCA
ACTCCCCGGAAGATCCGACCACGGCCGGCAACTTGGAGGGTTGCATGCAG
GAGCTTTTGGTCTGGGTCAAGAAGCGATGCGCCATCAACGACGATCTGGT
CGACAAAATTTGCACCGGCCTCTGCGACGGCGTTTCGAACGGCGAGCTGC
GGCTGCGATGTATGGCGCTGCTCTACAATTTTGTGGGCGAAGAGAACCAC
GACAAGCGCTTCACGCTGCTCCTGGCCACAATCAAGCTCGCGGCCCAAGC
AGGCCTAATCCCAAAGATCAGCGACACCGTTATGCCAAACATAGACTCGT
TTTTACGTCAGTGGGAAACACCGGTGCGTCAGAAACGACAAATGTACAAG
GTTTGCTACGAGTCTTTGAAATCTGCCGACATGGCGGCACAGGCGTTCGC
GTTTAACGTCAAACAGCTCAGTTTGTACAACGGCGCTTCGGAGCAAGAGT
TGCGCGACGCCCAGGACTCTACCATTGATGTCATCGTCCAGGCCGTGCGC
TTGCCCAAGCTTTACCGCTTCGACACGTTGCTGGAACTGGATGCCGTCAA
GAGGTTTGGAAACTTGGACGGAGACTTCAAATTACTGCACGAGCTGATTT
GGATCTTTGTTCGCGACGATCTTGCAGTATTTACCGACTTCAAGGCCAAA
AACGAACACTTGCTCAAAAAGCACCACATCAACGTGAGCGTCGCAGAGGA
CAAGATGAGACTGCTTACGTTTGCTTCTCTGGGAATTGATTCTCAGGACC
TGACGTACGATATGATTGCCAGCGCATTACAAATTCCTCAAGACCAGGTC
GAAGATTGGGTCATCCGTGCGATCAGCTCCGGTCTAGTGGACGGCAAGAT
CAATCAACTCAAGTCTTCTGTGGCCATATATCGATCTACACAGAGAATGT
TCACCAGAGAGGAGTGGCAGCCACTGTCCGAGCGCATCAATATCTGGAAG
GAAAATATTGGGGAACTGTTGGGAGCGCTTCGCGAAACGAGGAAGGCATC
AACGACGGCCGCAGCAATGGCGTCCGGTTTAGAATGA