Gvermi13882.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13882.t1
Unique NameGvermi13882.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length408
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:641033..642256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog52644.XP_010562810.1
Preferred nameNFS1
PFAMsAminotran_5
Max annot lvl33208|Metazoa
KEGG rclassRC01789,RC02313
KEGG koko:K04487
KEGG ReactionR07460,R11528,R11529
KEGG Pathwayko00730,ko01100,ko04122,map00730,map01100,map04122
GOsGO:0000096,GO:0000959,GO:0000963,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006139,GO:0006163,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006520,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009451,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016226,GO:0016740,GO:0016782,GO:0016783,GO:0018130,GO:0018282,GO:0018283,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0022607,GO:0031071,GO:0031163,GO:0031974,GO:0031981,GO:0032324,GO:0032991,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0042278,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043545,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0046983,GO:0051186,GO:0051188,GO:0051189,GO:0055086,GO:0065003,GO:0070013,GO:0070525,GO:0070900,GO:0070903,GO:0071704,GO:0071840,GO:0072521,GO:0090304,GO:0090407,GO:0090646,GO:0140053,GO:1900864,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1990221
Evalue2.88e-220
EggNOG OGsCOG1104@1|root,KOG1549@2759|Eukaryota,38E7D@33154|Opisthokonta,3BC56@33208|Metazoa,3CWJG@33213|Bilateria,481PR@7711|Chordata,492J8@7742|Vertebrata,4GQI8@8782|Aves
EC2.8.1.7
DescriptionCysteine desulfurase, mitochondrial
COG categoryE
BRITEko00000,ko00001,ko01000,ko02048,ko03016,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13882Gvermi13882Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 641033..642256 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13882.t1.stop1Gvermi13882.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 641033..641035 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13882.t1.CDS1Gvermi13882.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 641033..642256 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13882.t1.exon1Gvermi13882.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 641033..642256 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13882.t1.start1Gvermi13882.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 642254..642256 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13882.t1Gvermi13882.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 641033..642256 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13882.t1 ID=Gvermi13882.t1|Name=Gvermi13882.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=408bp
MVVNPRPIYLDMQSTTPVDPRVADVMIPHLTTHHGNPHSRTHAYGWDAER
AVEVARRQVADLIGADPREIIFTSGATESNNMVVKGVAMFYKSRKKHIVT
TQTEHKCVLDSCRWLQQRGFEVTYLPVKADGLLDLDELKDAIRPDTSLVS
VMAVNNEIGVVQPLQQIGELCRENGVFFHTDAAQMVGKLPMDVNQMNIDL
MSISAHKIYGPKGIGALYLRRRPRVRIEPQMSGGGQERGLRSGTLPTALV
VGMGEAARLSQQEMEYDLQRMKSLGDRLYKGVMSRVPNVVLNGSKEYRFP
GNLNMSFAYVEGESLLMALKDVAVSSGSACTSASLEPSYVLRALGVDDEM
AHTSIRFGIGRFTTEKEVDYAVDLAEKHVQRLREMSPLWEMVQEGIDIKS
INWTQEH*
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spliced messenger RNA

>Gvermi13882.t1 ID=Gvermi13882.t1|Name=Gvermi13882.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1224bp|location=Sequence derived from alignment at ScGOVlb_647:641033..642256- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGTCAATCCACGTCCGATATACCTCGACATGCAGTCCACAACACC
TGTAGACCCTCGTGTGGCAGATGTCATGATACCGCATTTAACTACCCATC
ACGGAAACCCACACTCGCGAACTCACGCGTATGGATGGGATGCAGAACGT
GCTGTGGAGGTGGCGCGCAGGCAAGTGGCTGATTTAATCGGCGCTGATCC
GCGCGAGATTATTTTCACGTCGGGCGCTACCGAGAGCAACAACATGGTCG
TCAAGGGCGTTGCCATGTTCTACAAGTCTAGAAAGAAGCACATCGTGACC
ACCCAGACAGAGCACAAGTGCGTTTTAGACAGCTGTCGATGGTTACAGCA
GCGTGGTTTTGAGGTCACATACCTCCCGGTCAAGGCTGATGGCCTTTTGG
ATTTGGATGAGCTTAAAGACGCAATTCGTCCCGATACCTCTCTTGTCAGC
GTCATGGCAGTCAATAACGAGATCGGCGTTGTGCAACCGCTGCAGCAGAT
TGGTGAGCTATGCAGAGAAAATGGCGTTTTCTTCCATACCGATGCAGCGC
AGATGGTTGGCAAATTACCAATGGACGTAAATCAAATGAACATTGACCTC
ATGTCTATATCTGCCCACAAGATATACGGACCAAAAGGGATTGGAGCACT
GTATTTGCGTAGGAGGCCAAGGGTGCGTATTGAACCGCAGATGAGCGGTG
GTGGCCAGGAACGAGGTCTAAGATCTGGGACGTTGCCCACAGCGTTAGTT
GTTGGCATGGGGGAAGCGGCTAGATTAAGTCAACAAGAAATGGAATATGA
CTTGCAGCGAATGAAAAGTCTGGGGGATCGCCTGTACAAAGGGGTCATGA
GCAGAGTTCCCAACGTCGTCTTGAATGGCAGCAAGGAATATCGCTTTCCT
GGCAATCTGAACATGAGCTTTGCGTACGTTGAGGGTGAAAGTCTGTTAAT
GGCATTGAAAGATGTAGCAGTCAGCAGCGGAAGCGCATGTACCAGTGCAA
GTTTAGAGCCTAGCTACGTACTTCGCGCTTTGGGAGTGGATGATGAAATG
GCACATACAAGTATTAGGTTTGGAATCGGGAGATTTACAACGGAAAAGGA
GGTAGACTACGCAGTAGATTTGGCAGAGAAGCACGTGCAGAGACTGCGAG
AAATGAGCCCTCTATGGGAAATGGTACAGGAGGGAATAGACATTAAGTCG
ATTAACTGGACTCAAGAACATTAA
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protein sequence of Gvermi13882.t1

>Gvermi13882.t1 ID=Gvermi13882.t1|Name=Gvermi13882.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=408bp
MVVNPRPIYLDMQSTTPVDPRVADVMIPHLTTHHGNPHSRTHAYGWDAER
AVEVARRQVADLIGADPREIIFTSGATESNNMVVKGVAMFYKSRKKHIVT
TQTEHKCVLDSCRWLQQRGFEVTYLPVKADGLLDLDELKDAIRPDTSLVS
VMAVNNEIGVVQPLQQIGELCRENGVFFHTDAAQMVGKLPMDVNQMNIDL
MSISAHKIYGPKGIGALYLRRRPRVRIEPQMSGGGQERGLRSGTLPTALV
VGMGEAARLSQQEMEYDLQRMKSLGDRLYKGVMSRVPNVVLNGSKEYRFP
GNLNMSFAYVEGESLLMALKDVAVSSGSACTSASLEPSYVLRALGVDDEM
AHTSIRFGIGRFTTEKEVDYAVDLAEKHVQRLREMSPLWEMVQEGIDIKS
INWTQEH*
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mRNA from alignment at ScGOVlb_647:641033..642256-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13882.t1 ID=Gvermi13882.t1|Name=Gvermi13882.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1224bp|location=Sequence derived from alignment at ScGOVlb_647:641033..642256- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGGTCAATCCACGTCCGATATACCTCGACATGCAGTCCACAACACC
TGTAGACCCTCGTGTGGCAGATGTCATGATACCGCATTTAACTACCCATC
ACGGAAACCCACACTCGCGAACTCACGCGTATGGATGGGATGCAGAACGT
GCTGTGGAGGTGGCGCGCAGGCAAGTGGCTGATTTAATCGGCGCTGATCC
GCGCGAGATTATTTTCACGTCGGGCGCTACCGAGAGCAACAACATGGTCG
TCAAGGGCGTTGCCATGTTCTACAAGTCTAGAAAGAAGCACATCGTGACC
ACCCAGACAGAGCACAAGTGCGTTTTAGACAGCTGTCGATGGTTACAGCA
GCGTGGTTTTGAGGTCACATACCTCCCGGTCAAGGCTGATGGCCTTTTGG
ATTTGGATGAGCTTAAAGACGCAATTCGTCCCGATACCTCTCTTGTCAGC
GTCATGGCAGTCAATAACGAGATCGGCGTTGTGCAACCGCTGCAGCAGAT
TGGTGAGCTATGCAGAGAAAATGGCGTTTTCTTCCATACCGATGCAGCGC
AGATGGTTGGCAAATTACCAATGGACGTAAATCAAATGAACATTGACCTC
ATGTCTATATCTGCCCACAAGATATACGGACCAAAAGGGATTGGAGCACT
GTATTTGCGTAGGAGGCCAAGGGTGCGTATTGAACCGCAGATGAGCGGTG
GTGGCCAGGAACGAGGTCTAAGATCTGGGACGTTGCCCACAGCGTTAGTT
GTTGGCATGGGGGAAGCGGCTAGATTAAGTCAACAAGAAATGGAATATGA
CTTGCAGCGAATGAAAAGTCTGGGGGATCGCCTGTACAAAGGGGTCATGA
GCAGAGTTCCCAACGTCGTCTTGAATGGCAGCAAGGAATATCGCTTTCCT
GGCAATCTGAACATGAGCTTTGCGTACGTTGAGGGTGAAAGTCTGTTAAT
GGCATTGAAAGATGTAGCAGTCAGCAGCGGAAGCGCATGTACCAGTGCAA
GTTTAGAGCCTAGCTACGTACTTCGCGCTTTGGGAGTGGATGATGAAATG
GCACATACAAGTATTAGGTTTGGAATCGGGAGATTTACAACGGAAAAGGA
GGTAGACTACGCAGTAGATTTGGCAGAGAAGCACGTGCAGAGACTGCGAG
AAATGAGCCCTCTATGGGAAATGGTACAGGAGGGAATAGACATTAAGTCG
ATTAACTGGACTCAAGAACATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_647:641033..642256-

>Gvermi13882.t1 ID=Gvermi13882.t1|Name=Gvermi13882.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1224bp|location=Sequence derived from alignment at ScGOVlb_647:641033..642256- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGGTCAATCCACGTCCGATATACCTCGACATGCAGTCCACAACACC
TGTAGACCCTCGTGTGGCAGATGTCATGATACCGCATTTAACTACCCATC
ACGGAAACCCACACTCGCGAACTCACGCGTATGGATGGGATGCAGAACGT
GCTGTGGAGGTGGCGCGCAGGCAAGTGGCTGATTTAATCGGCGCTGATCC
GCGCGAGATTATTTTCACGTCGGGCGCTACCGAGAGCAACAACATGGTCG
TCAAGGGCGTTGCCATGTTCTACAAGTCTAGAAAGAAGCACATCGTGACC
ACCCAGACAGAGCACAAGTGCGTTTTAGACAGCTGTCGATGGTTACAGCA
GCGTGGTTTTGAGGTCACATACCTCCCGGTCAAGGCTGATGGCCTTTTGG
ATTTGGATGAGCTTAAAGACGCAATTCGTCCCGATACCTCTCTTGTCAGC
GTCATGGCAGTCAATAACGAGATCGGCGTTGTGCAACCGCTGCAGCAGAT
TGGTGAGCTATGCAGAGAAAATGGCGTTTTCTTCCATACCGATGCAGCGC
AGATGGTTGGCAAATTACCAATGGACGTAAATCAAATGAACATTGACCTC
ATGTCTATATCTGCCCACAAGATATACGGACCAAAAGGGATTGGAGCACT
GTATTTGCGTAGGAGGCCAAGGGTGCGTATTGAACCGCAGATGAGCGGTG
GTGGCCAGGAACGAGGTCTAAGATCTGGGACGTTGCCCACAGCGTTAGTT
GTTGGCATGGGGGAAGCGGCTAGATTAAGTCAACAAGAAATGGAATATGA
CTTGCAGCGAATGAAAAGTCTGGGGGATCGCCTGTACAAAGGGGTCATGA
GCAGAGTTCCCAACGTCGTCTTGAATGGCAGCAAGGAATATCGCTTTCCT
GGCAATCTGAACATGAGCTTTGCGTACGTTGAGGGTGAAAGTCTGTTAAT
GGCATTGAAAGATGTAGCAGTCAGCAGCGGAAGCGCATGTACCAGTGCAA
GTTTAGAGCCTAGCTACGTACTTCGCGCTTTGGGAGTGGATGATGAAATG
GCACATACAAGTATTAGGTTTGGAATCGGGAGATTTACAACGGAAAAGGA
GGTAGACTACGCAGTAGATTTGGCAGAGAAGCACGTGCAGAGACTGCGAG
AAATGAGCCCTCTATGGGAAATGGTACAGGAGGGAATAGACATTAAGTCG
ATTAACTGGACTCAAGAACATTAA
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