Gvermi13872.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13872.t1
Unique Name	Gvermi13872.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	767

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_647	contig	ScGOVlb_647:471787..474087 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13872	Gvermi13872	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_647 471787..474087 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13872.t1.start1	Gvermi13872.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_647 471787..471789 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13872.t1.CDS1	Gvermi13872.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_647 471787..474087 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13872.t1.exon1	Gvermi13872.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_647 471787..474087 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13872.t1.stop1	Gvermi13872.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_647 474085..474087 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13872.t1	Gvermi13872.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_647 471787..474087 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_647:471787..474087+
coding sequence from alignment at ScGOVlb_647:471787..474087+

mRNA sequence

>Gvermi13872.t1 ID=Gvermi13872.t1|Name=Gvermi13872.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=767bp
MRSRVSNTHDRAPSPPPPSSAPASSQALTSSTSLSTSTTAVTSSTSRRRH
LSRQLYSLRRDRHSSQPHAHAADPDFGPAAEPHADMDVSPHRARQAPNDP
STPRRLVTDTSHRAHFVRALLPPPSSHMLHHNCASVTQFLRPVTLPIDRV
PEAADPSFKPHAALLRRITLHHFELNRYLFAFKPLARVHAVMAATLLAPA
HLDASSFPMSALLRTAVMYLAGNSYRNVYVMTYAAQLKSIHRSTPPAQGI
MPSVLLDGHHLPQSQLIALDFAQQLLSDDYAVTDATSKRFIDTLQNDACA
LDRYVAATSAYGAFLSTLTSTLDLELTHAAIQYASTNLHGLPWKSSTAPL
NVGLSDDEMDQFGCSNPKSTLAKQKRSKERFSLHNSYHRHNVHGKSRPRA
IRKLSHFLSHSLMAPKIIGDVNRVTDTWMGSVHIPASGQLFEANDFINHA
FGFEPFYFSTQAMANEAMRRAFLYGCVELLFGERDVPRRLKFILCYVLSS
GRERRRIDTDHVKSFERQGTHNGHSICSVYKRRPYDALSIMSAHAAYLAC
KYGSCAAELVAATDISRVRGAMERYQNRSDTNMHTRLVDFPLPRRDCAAV
MLAHALLHNSPCISEADLVAFEASFGSGKDADQAGRSSRQAFLEVLGTAC
MWSSLERYATGVLAFDIDFTSNLAFCKGRAEPTVMEFCRSVEGKKIGLSL
AFGHEGNLVRTRSDPKASRAQSLQSAARSTKRLHRKRTSSVLSTGLRVAR
MFSCDDLRSKESAAVS*

spliced messenger RNA

>Gvermi13872.t1 ID=Gvermi13872.t1|Name=Gvermi13872.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2301bp|location=Sequence derived from alignment at ScGOVlb_647:471787..474087+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTCCCGCGTCTCCAACACCCATGACCGCGCTCCTTCCCCCCCCCC
GCCCTCCTCGGCGCCCGCGTCTTCGCAGGCGCTCACCTCGTCCACCTCGC
TCTCCACCTCTACCACCGCCGTCACCTCCTCCACCTCCCGCCGCCGCCAC
CTCTCGCGCCAGCTCTACTCCCTCCGCCGCGACCGCCACTCGTCGCAGCC
TCACGCCCACGCCGCCGACCCGGACTTCGGCCCCGCCGCGGAGCCTCACG
CAGACATGGACGTCTCGCCGCACCGCGCGCGCCAAGCGCCCAACGACCCG
TCCACCCCCCGTCGGCTGGTTACCGACACTTCGCACCGCGCCCACTTTGT
GCGCGCCCTGCTCCCGCCGCCCTCGTCGCACATGCTGCATCACAACTGCG
CCTCCGTCACCCAGTTCCTGCGCCCCGTCACGCTCCCCATCGACCGCGTC
CCCGAGGCGGCAGACCCCTCGTTCAAGCCGCACGCCGCGTTGCTGCGCCG
CATCACGCTGCACCACTTTGAGCTCAACCGCTACCTGTTCGCGTTCAAAC
CGTTGGCGCGCGTGCACGCCGTCATGGCTGCCACGCTGCTGGCGCCGGCG
CATCTGGACGCCAGCAGCTTTCCCATGTCCGCGCTGCTGCGCACCGCGGT
CATGTACCTCGCCGGCAACTCGTACCGCAATGTGTACGTCATGACGTACG
CGGCGCAGCTCAAGAGCATCCACCGCTCCACGCCGCCCGCGCAGGGAATC
ATGCCGTCCGTGCTGCTGGACGGCCATCACCTGCCGCAGTCGCAGCTCAT
CGCGCTCGACTTTGCGCAGCAGCTGCTCTCCGACGACTACGCCGTGACGG
ACGCCACAAGCAAGCGCTTTATCGATACGCTGCAGAACGACGCATGTGCG
CTCGATCGATATGTTGCCGCCACCAGCGCGTACGGCGCATTTCTGTCCAC
GCTCACCAGTACGCTGGACCTCGAACTCACGCACGCCGCCATTCAGTACG
CCTCCACCAACCTGCACGGGCTGCCGTGGAAGTCCAGCACTGCGCCGCTC
AACGTCGGCTTGAGCGACGACGAGATGGATCAGTTTGGGTGCTCCAACCC
CAAGTCAACGCTTGCTAAGCAAAAGCGCAGCAAAGAACGTTTCAGTCTTC
ATAACAGTTATCACCGCCACAACGTGCACGGAAAGAGTCGCCCGCGCGCC
ATCCGCAAATTGTCTCACTTTCTTTCGCACTCCCTCATGGCACCCAAGAT
CATTGGCGACGTGAACCGCGTCACCGACACCTGGATGGGCAGTGTTCACA
TTCCTGCCTCGGGCCAACTCTTTGAAGCCAACGACTTCATTAACCATGCG
TTTGGCTTTGAACCTTTTTACTTTTCCACGCAGGCCATGGCCAACGAAGC
CATGAGGCGCGCCTTCCTCTACGGTTGCGTGGAACTGCTGTTCGGTGAGC
GAGACGTCCCGAGACGTCTCAAGTTTATTCTGTGCTACGTTCTGTCGTCG
GGGCGCGAACGCCGACGGATAGACACCGACCACGTGAAAAGCTTCGAGCG
ACAGGGAACGCACAACGGCCATTCAATCTGTTCCGTGTACAAGCGCAGAC
CGTATGACGCGCTGAGCATCATGTCCGCGCACGCCGCGTATCTTGCGTGC
AAGTACGGCTCGTGTGCCGCTGAACTTGTTGCCGCCACCGACATCAGCCG
CGTGCGCGGCGCCATGGAGAGATATCAGAACCGATCCGACACCAACATGC
ACACCCGTCTCGTGGACTTTCCGCTTCCGCGAAGAGATTGCGCTGCGGTC
ATGTTGGCGCACGCGCTTTTGCACAACTCGCCGTGCATTTCGGAGGCAGA
TCTGGTGGCTTTTGAGGCGAGCTTCGGCTCTGGCAAGGACGCCGACcagg
caggcaggagcagcaggcaggcGTTTTTGGAGGTGCTTGGAACCGCTTGC
ATGTGGAGTTCGCTAGAGCGATACGCGACGGGTGTTCTCGCGTTTGACAT
TGATTTCACGTCCAACCTGGCGTTTTGCAAGGGCAGGGCGGAGCCCACTG
TCATGGAGTTTTGCCGCAGCGTGGAGGGCAAGAAAATTGGGCTGAGTCTT
GCCTTTGGCCACGAGGGAAACCTTGTGAGAACGCGTTCTGACCCGAAAGC
GTCGCGAGCTCAATCTCTGCAGAGCGCCGCAAGGAGTACCAAGAGGTTGC
ATCGGAAACGAACTAGCTCTGTGCTAAGCACTGGATTGCGAGTTGCGCGG
ATGTTTAGCTGTGATGATCTACGTTCAAAGGAAAGTGCGGCGGTGTCATA
G

protein sequence of Gvermi13872.t1

>Gvermi13872.t1 ID=Gvermi13872.t1|Name=Gvermi13872.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=767bp
MRSRVSNTHDRAPSPPPPSSAPASSQALTSSTSLSTSTTAVTSSTSRRRH
LSRQLYSLRRDRHSSQPHAHAADPDFGPAAEPHADMDVSPHRARQAPNDP
STPRRLVTDTSHRAHFVRALLPPPSSHMLHHNCASVTQFLRPVTLPIDRV
PEAADPSFKPHAALLRRITLHHFELNRYLFAFKPLARVHAVMAATLLAPA
HLDASSFPMSALLRTAVMYLAGNSYRNVYVMTYAAQLKSIHRSTPPAQGI
MPSVLLDGHHLPQSQLIALDFAQQLLSDDYAVTDATSKRFIDTLQNDACA
LDRYVAATSAYGAFLSTLTSTLDLELTHAAIQYASTNLHGLPWKSSTAPL
NVGLSDDEMDQFGCSNPKSTLAKQKRSKERFSLHNSYHRHNVHGKSRPRA
IRKLSHFLSHSLMAPKIIGDVNRVTDTWMGSVHIPASGQLFEANDFINHA
FGFEPFYFSTQAMANEAMRRAFLYGCVELLFGERDVPRRLKFILCYVLSS
GRERRRIDTDHVKSFERQGTHNGHSICSVYKRRPYDALSIMSAHAAYLAC
KYGSCAAELVAATDISRVRGAMERYQNRSDTNMHTRLVDFPLPRRDCAAV
MLAHALLHNSPCISEADLVAFEASFGSGKDADQAGRSSRQAFLEVLGTAC
MWSSLERYATGVLAFDIDFTSNLAFCKGRAEPTVMEFCRSVEGKKIGLSL
AFGHEGNLVRTRSDPKASRAQSLQSAARSTKRLHRKRTSSVLSTGLRVAR
MFSCDDLRSKESAAVS*

mRNA from alignment at ScGOVlb_647:471787..474087+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13872.t1 ID=Gvermi13872.t1|Name=Gvermi13872.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2301bp|location=Sequence derived from alignment at ScGOVlb_647:471787..474087+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCTCCCGCGTCTCCAACACCCATGACCGCGCTCCTTCCCCCCCCCC
GCCCTCCTCGGCGCCCGCGTCTTCGCAGGCGCTCACCTCGTCCACCTCGC
TCTCCACCTCTACCACCGCCGTCACCTCCTCCACCTCCCGCCGCCGCCAC
CTCTCGCGCCAGCTCTACTCCCTCCGCCGCGACCGCCACTCGTCGCAGCC
TCACGCCCACGCCGCCGACCCGGACTTCGGCCCCGCCGCGGAGCCTCACG
CAGACATGGACGTCTCGCCGCACCGCGCGCGCCAAGCGCCCAACGACCCG
TCCACCCCCCGTCGGCTGGTTACCGACACTTCGCACCGCGCCCACTTTGT
GCGCGCCCTGCTCCCGCCGCCCTCGTCGCACATGCTGCATCACAACTGCG
CCTCCGTCACCCAGTTCCTGCGCCCCGTCACGCTCCCCATCGACCGCGTC
CCCGAGGCGGCAGACCCCTCGTTCAAGCCGCACGCCGCGTTGCTGCGCCG
CATCACGCTGCACCACTTTGAGCTCAACCGCTACCTGTTCGCGTTCAAAC
CGTTGGCGCGCGTGCACGCCGTCATGGCTGCCACGCTGCTGGCGCCGGCG
CATCTGGACGCCAGCAGCTTTCCCATGTCCGCGCTGCTGCGCACCGCGGT
CATGTACCTCGCCGGCAACTCGTACCGCAATGTGTACGTCATGACGTACG
CGGCGCAGCTCAAGAGCATCCACCGCTCCACGCCGCCCGCGCAGGGAATC
ATGCCGTCCGTGCTGCTGGACGGCCATCACCTGCCGCAGTCGCAGCTCAT
CGCGCTCGACTTTGCGCAGCAGCTGCTCTCCGACGACTACGCCGTGACGG
ACGCCACAAGCAAGCGCTTTATCGATACGCTGCAGAACGACGCATGTGCG
CTCGATCGATATGTTGCCGCCACCAGCGCGTACGGCGCATTTCTGTCCAC
GCTCACCAGTACGCTGGACCTCGAACTCACGCACGCCGCCATTCAGTACG
CCTCCACCAACCTGCACGGGCTGCCGTGGAAGTCCAGCACTGCGCCGCTC
AACGTCGGCTTGAGCGACGACGAGATGGATCAGTTTGGGTGCTCCAACCC
CAAGTCAACGCTTGCTAAGCAAAAGCGCAGCAAAGAACGTTTCAGTCTTC
ATAACAGTTATCACCGCCACAACGTGCACGGAAAGAGTCGCCCGCGCGCC
ATCCGCAAATTGTCTCACTTTCTTTCGCACTCCCTCATGGCACCCAAGAT
CATTGGCGACGTGAACCGCGTCACCGACACCTGGATGGGCAGTGTTCACA
TTCCTGCCTCGGGCCAACTCTTTGAAGCCAACGACTTCATTAACCATGCG
TTTGGCTTTGAACCTTTTTACTTTTCCACGCAGGCCATGGCCAACGAAGC
CATGAGGCGCGCCTTCCTCTACGGTTGCGTGGAACTGCTGTTCGGTGAGC
GAGACGTCCCGAGACGTCTCAAGTTTATTCTGTGCTACGTTCTGTCGTCG
GGGCGCGAACGCCGACGGATAGACACCGACCACGTGAAAAGCTTCGAGCG
ACAGGGAACGCACAACGGCCATTCAATCTGTTCCGTGTACAAGCGCAGAC
CGTATGACGCGCTGAGCATCATGTCCGCGCACGCCGCGTATCTTGCGTGC
AAGTACGGCTCGTGTGCCGCTGAACTTGTTGCCGCCACCGACATCAGCCG
CGTGCGCGGCGCCATGGAGAGATATCAGAACCGATCCGACACCAACATGC
ACACCCGTCTCGTGGACTTTCCGCTTCCGCGAAGAGATTGCGCTGCGGTC
ATGTTGGCGCACGCGCTTTTGCACAACTCGCCGTGCATTTCGGAGGCAGA
TCTGGTGGCTTTTGAGGCGAGCTTCGGCTCTGGCAAGGACGCCGACcagg
caggcaggagcagcaggcaggcGTTTTTGGAGGTGCTTGGAACCGCTTGC
ATGTGGAGTTCGCTAGAGCGATACGCGACGGGTGTTCTCGCGTTTGACAT
TGATTTCACGTCCAACCTGGCGTTTTGCAAGGGCAGGGCGGAGCCCACTG
TCATGGAGTTTTGCCGCAGCGTGGAGGGCAAGAAAATTGGGCTGAGTCTT
GCCTTTGGCCACGAGGGAAACCTTGTGAGAACGCGTTCTGACCCGAAAGC
GTCGCGAGCTCAATCTCTGCAGAGCGCCGCAAGGAGTACCAAGAGGTTGC
ATCGGAAACGAACTAGCTCTGTGCTAAGCACTGGATTGCGAGTTGCGCGG
ATGTTTAGCTGTGATGATCTACGTTCAAAGGAAAGTGCGGCGGTGTCATA
G

Coding sequence (CDS) from alignment at ScGOVlb_647:471787..474087+

>Gvermi13872.t1 ID=Gvermi13872.t1|Name=Gvermi13872.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2301bp|location=Sequence derived from alignment at ScGOVlb_647:471787..474087+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCTCCCGCGTCTCCAACACCCATGACCGCGCTCCTTCCCCCCCCCC
GCCCTCCTCGGCGCCCGCGTCTTCGCAGGCGCTCACCTCGTCCACCTCGC
TCTCCACCTCTACCACCGCCGTCACCTCCTCCACCTCCCGCCGCCGCCAC
CTCTCGCGCCAGCTCTACTCCCTCCGCCGCGACCGCCACTCGTCGCAGCC
TCACGCCCACGCCGCCGACCCGGACTTCGGCCCCGCCGCGGAGCCTCACG
CAGACATGGACGTCTCGCCGCACCGCGCGCGCCAAGCGCCCAACGACCCG
TCCACCCCCCGTCGGCTGGTTACCGACACTTCGCACCGCGCCCACTTTGT
GCGCGCCCTGCTCCCGCCGCCCTCGTCGCACATGCTGCATCACAACTGCG
CCTCCGTCACCCAGTTCCTGCGCCCCGTCACGCTCCCCATCGACCGCGTC
CCCGAGGCGGCAGACCCCTCGTTCAAGCCGCACGCCGCGTTGCTGCGCCG
CATCACGCTGCACCACTTTGAGCTCAACCGCTACCTGTTCGCGTTCAAAC
CGTTGGCGCGCGTGCACGCCGTCATGGCTGCCACGCTGCTGGCGCCGGCG
CATCTGGACGCCAGCAGCTTTCCCATGTCCGCGCTGCTGCGCACCGCGGT
CATGTACCTCGCCGGCAACTCGTACCGCAATGTGTACGTCATGACGTACG
CGGCGCAGCTCAAGAGCATCCACCGCTCCACGCCGCCCGCGCAGGGAATC
ATGCCGTCCGTGCTGCTGGACGGCCATCACCTGCCGCAGTCGCAGCTCAT
CGCGCTCGACTTTGCGCAGCAGCTGCTCTCCGACGACTACGCCGTGACGG
ACGCCACAAGCAAGCGCTTTATCGATACGCTGCAGAACGACGCATGTGCG
CTCGATCGATATGTTGCCGCCACCAGCGCGTACGGCGCATTTCTGTCCAC
GCTCACCAGTACGCTGGACCTCGAACTCACGCACGCCGCCATTCAGTACG
CCTCCACCAACCTGCACGGGCTGCCGTGGAAGTCCAGCACTGCGCCGCTC
AACGTCGGCTTGAGCGACGACGAGATGGATCAGTTTGGGTGCTCCAACCC
CAAGTCAACGCTTGCTAAGCAAAAGCGCAGCAAAGAACGTTTCAGTCTTC
ATAACAGTTATCACCGCCACAACGTGCACGGAAAGAGTCGCCCGCGCGCC
ATCCGCAAATTGTCTCACTTTCTTTCGCACTCCCTCATGGCACCCAAGAT
CATTGGCGACGTGAACCGCGTCACCGACACCTGGATGGGCAGTGTTCACA
TTCCTGCCTCGGGCCAACTCTTTGAAGCCAACGACTTCATTAACCATGCG
TTTGGCTTTGAACCTTTTTACTTTTCCACGCAGGCCATGGCCAACGAAGC
CATGAGGCGCGCCTTCCTCTACGGTTGCGTGGAACTGCTGTTCGGTGAGC
GAGACGTCCCGAGACGTCTCAAGTTTATTCTGTGCTACGTTCTGTCGTCG
GGGCGCGAACGCCGACGGATAGACACCGACCACGTGAAAAGCTTCGAGCG
ACAGGGAACGCACAACGGCCATTCAATCTGTTCCGTGTACAAGCGCAGAC
CGTATGACGCGCTGAGCATCATGTCCGCGCACGCCGCGTATCTTGCGTGC
AAGTACGGCTCGTGTGCCGCTGAACTTGTTGCCGCCACCGACATCAGCCG
CGTGCGCGGCGCCATGGAGAGATATCAGAACCGATCCGACACCAACATGC
ACACCCGTCTCGTGGACTTTCCGCTTCCGCGAAGAGATTGCGCTGCGGTC
ATGTTGGCGCACGCGCTTTTGCACAACTCGCCGTGCATTTCGGAGGCAGA
TCTGGTGGCTTTTGAGGCGAGCTTCGGCTCTGGCAAGGACGCCGACcagg
caggcaggagcagcaggcaggcGTTTTTGGAGGTGCTTGGAACCGCTTGC
ATGTGGAGTTCGCTAGAGCGATACGCGACGGGTGTTCTCGCGTTTGACAT
TGATTTCACGTCCAACCTGGCGTTTTGCAAGGGCAGGGCGGAGCCCACTG
TCATGGAGTTTTGCCGCAGCGTGGAGGGCAAGAAAATTGGGCTGAGTCTT
GCCTTTGGCCACGAGGGAAACCTTGTGAGAACGCGTTCTGACCCGAAAGC
GTCGCGAGCTCAATCTCTGCAGAGCGCCGCAAGGAGTACCAAGAGGTTGC
ATCGGAAACGAACTAGCTCTGTGCTAAGCACTGGATTGCGAGTTGCGCGG
ATGTTTAGCTGTGATGATCTACGTTCAAAGGAAAGTGCGGCGGTGTCATA
G