Gvermi13850.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13850.t1
Unique NameGvermi13850.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length605
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:361549..363473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13850Gvermi13850Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 361549..363473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13850.t1Gvermi13850.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 361549..363473 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13850.t1.start1Gvermi13850.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 361549..361551 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13850.t1.CDS1Gvermi13850.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 361549..363158 +
Gvermi13850.t1.CDS2Gvermi13850.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 363269..363473 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13850.t1.exon1Gvermi13850.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 361549..363158 +
Gvermi13850.t1.exon2Gvermi13850.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 363269..363473 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13850.t1.intron1Gvermi13850.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_647 363159..363268 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13850.t1.stop1Gvermi13850.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 363471..363473 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13850.t1 ID=Gvermi13850.t1|Name=Gvermi13850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=605bp
MALFERPNAFQITALLRLGFAARLRSETADTFLAHNSETLVRTDARKDAA
VLYFMSGDNTSVLKPIQTLVLLQHAEHRATKFLTFVDTPLLSEAPTLLML
QMKDAPSPRRMLFSLSSLSKPPRYLSVRNVKRGQSAHLRNERTNCELFHL
EIIPGSLGSGVRASPVPFVSSFLTVPEAISQMLLLLGVRFRLRSVHDRVL
HRDLAQHDQILVRQTGERTDINSSRDRDLVFVSSVHTSETAPRKSLFFYL
NEVNTNRYLAIGKSDADGSCARLLSEKTPIAMNLSGSLGNVNLGLLQGQR
YHSVQWLMAGPRGRLEMRKDRGSWETFKIEYVQQSYNVELARLPVPPYYS
IAEEVTREMLRCEITARIAVAKGEATPPPAAQSGSASSAFDHAAALAGLS
DAPKTPKSPASDQNKQGAKKKPSAAEQPRPAPKKADSAAVKAAAAASASS
TLPRNKANRKAAKKNRRKQKGKQSKTSSTRSQASRAKPSTGNGPADDVTP
AAQAEESKKQEKIPQTTPEEPSSSSASAASSNVQGPKPQPVPRTKRDSVL
QSLLCEQNCLAVCAVFATNHGNGRYRDGQDMAQGVSDVHNLQTSFDTDLL
ALRR*
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spliced messenger RNA

>Gvermi13850.t1 ID=Gvermi13850.t1|Name=Gvermi13850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1815bp|location=Sequence derived from alignment at ScGOVlb_647:361549..363473+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTGTTCGAGCGCCCCAACGCGTTCCAGATCACCGCGCTGCTGCG
GCTCGGCTTTGCCGCCCGTCTTCGGTCTGAAACCGCCGACACCTTCCTTG
CGCACAACTCCGAAACCCTCGTGCGAACCGACGCGCGCAAGGATGCCGCC
GTGCTCTACTTCATGTCCGGCGACAACACCTCGGTCCTCAAGCCGATTCA
GACGCTGGTGCTGCTGCAACACGCCGAGCACCGCGCGACAAAGTTTCTCA
CGTTTGTGGACACCCCGCTGCTCTCGGAGGCGCCCACGCTGCTCATGCTG
CAGATGAAGGACGCCCCAAGCCCTCGGCGCATGCTGTTTTCGCTCAGTTC
GCTCTCCAAGCCGCCGCGCTACCTCAGCGTGCGCAACGTCAAACGCGGCC
AAAGTGCGCACCTGCGCAACGAGCGCACCAATTGCGAACTGTTTCACCTG
GAAATCATCCCCGGTTCGCTCGGATCCGGGGTGCGAGCCTCCCCGGTTCC
GTTCGTGTCGTCGTTCCTGACGGTGCCGGAGGCCATCTCGCAGATGCTCT
TGTTGCTCGGCGTGCGTTTCAGGCTCCGGTCGGTCCATGACCGCGTCCTG
CACAGGGACCTCGCGCAGCACGACCAAATCCTCGTGCGTCAAACCGGCGA
GCGCACCGATATCAATTCCAGTCGCGACCGTGACCTGGTCTTCGTTTCCT
CCGTGCATACGTCAGAAACGGCGCCTCGCAAGTCTTTGTTTTTTTACCTC
AACGAAGTAAACACAAACCGTTACCTTGCAATCGGCAAATCAGACGCAGA
CGGCTCGTGTGCAAGGTTGCTCTCCGAAAAGACACCCATTGCCATGAACC
TCTCTGGTTCGCTAGGGAACGTCAACCTCGGCCTTCTCCAAGGTCAACGA
TATCACTCTGTGCAATGGCTCATGGCAGGTCCGAGGGGTCGCTTGGAAAT
GCGCAAGGACAGAGGGTCTTGGGAAACATTTAAGATTGAATATGTGCAAC
AATCCTACAACGTTGAACTTGCACGCTTGCCGGTTCCACCATACTATTCG
ATTGCAGAGGAAGTGACCCGCGAGATGCTAAGATGTGAAATCACGGCCAG
AATTGCGGTCGCCAAAGGCGAAGCTACCCCTCCGCCGGCGGCTCAGTCGG
GAAGCGCTTCATCGGCATTTGACCATGCAGCAGCACTTGCTGGTCTTTCA
GACGCTCCGAAAACCCCCAAGTCTCCAGCTTCGGACCAAAACAAACAGGG
GGCGAAAAAGAAACCCTCCGCTGCAGAACAACCACGCCCCGCCCCGAAGA
AGGCGGACTCGGCCGCTGTGAAAGCCGCAGCAGCAGCTTCTGCGTCTTCA
ACACTTCCAAGGAACAAAGCAAACCGCAAGGCAGCCAAAAAGAACAGGAG
GAAGCAGAAGGGGAAACAGTCAAAAACGTCTTCCACACGAAGTCAAGCGA
GCCGTGCAAAACCATCTACTGGCAATGGACCTGCAGATGACGTCACACCG
GCAGCACAAGCAGAAGAAAGCAAGAAACAAGAGAAAATCCCGCAGACGAC
ACCGGAAGAGCCTTCCTCTTCCTCGGCTTCTGCCGCAAGCTCCAATGTTC
AAGGGCCGAAGCCCCAGCCAGTTCCGAGAACGAAACGGGATTCCGTTTTG
CAATCCTTGTTATGCGAACAAAATTGCCTCGCGGTGTGCGCGGTGTTCGC
AACCAATCATGGAAACGGTCGTTACCGCGATGGACAAGACATGGCACAAG
GAGTGTCTGACGTGCACAATTTGCAGACTTCCTTTGACACAGACCTTCTG
GCTCTACGCCGATAA
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protein sequence of Gvermi13850.t1

>Gvermi13850.t1 ID=Gvermi13850.t1|Name=Gvermi13850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=605bp
MALFERPNAFQITALLRLGFAARLRSETADTFLAHNSETLVRTDARKDAA
VLYFMSGDNTSVLKPIQTLVLLQHAEHRATKFLTFVDTPLLSEAPTLLML
QMKDAPSPRRMLFSLSSLSKPPRYLSVRNVKRGQSAHLRNERTNCELFHL
EIIPGSLGSGVRASPVPFVSSFLTVPEAISQMLLLLGVRFRLRSVHDRVL
HRDLAQHDQILVRQTGERTDINSSRDRDLVFVSSVHTSETAPRKSLFFYL
NEVNTNRYLAIGKSDADGSCARLLSEKTPIAMNLSGSLGNVNLGLLQGQR
YHSVQWLMAGPRGRLEMRKDRGSWETFKIEYVQQSYNVELARLPVPPYYS
IAEEVTREMLRCEITARIAVAKGEATPPPAAQSGSASSAFDHAAALAGLS
DAPKTPKSPASDQNKQGAKKKPSAAEQPRPAPKKADSAAVKAAAAASASS
TLPRNKANRKAAKKNRRKQKGKQSKTSSTRSQASRAKPSTGNGPADDVTP
AAQAEESKKQEKIPQTTPEEPSSSSASAASSNVQGPKPQPVPRTKRDSVL
QSLLCEQNCLAVCAVFATNHGNGRYRDGQDMAQGVSDVHNLQTSFDTDLL
ALRR*
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mRNA from alignment at ScGOVlb_647:361549..363473+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13850.t1 ID=Gvermi13850.t1|Name=Gvermi13850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1925bp|location=Sequence derived from alignment at ScGOVlb_647:361549..363473+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTTGTTCGAGCGCCCCAACGCGTTCCAGATCACCGCGCTGCTGCG
GCTCGGCTTTGCCGCCCGTCTTCGGTCTGAAACCGCCGACACCTTCCTTG
CGCACAACTCCGAAACCCTCGTGCGAACCGACGCGCGCAAGGATGCCGCC
GTGCTCTACTTCATGTCCGGCGACAACACCTCGGTCCTCAAGCCGATTCA
GACGCTGGTGCTGCTGCAACACGCCGAGCACCGCGCGACAAAGTTTCTCA
CGTTTGTGGACACCCCGCTGCTCTCGGAGGCGCCCACGCTGCTCATGCTG
CAGATGAAGGACGCCCCAAGCCCTCGGCGCATGCTGTTTTCGCTCAGTTC
GCTCTCCAAGCCGCCGCGCTACCTCAGCGTGCGCAACGTCAAACGCGGCC
AAAGTGCGCACCTGCGCAACGAGCGCACCAATTGCGAACTGTTTCACCTG
GAAATCATCCCCGGTTCGCTCGGATCCGGGGTGCGAGCCTCCCCGGTTCC
GTTCGTGTCGTCGTTCCTGACGGTGCCGGAGGCCATCTCGCAGATGCTCT
TGTTGCTCGGCGTGCGTTTCAGGCTCCGGTCGGTCCATGACCGCGTCCTG
CACAGGGACCTCGCGCAGCACGACCAAATCCTCGTGCGTCAAACCGGCGA
GCGCACCGATATCAATTCCAGTCGCGACCGTGACCTGGTCTTCGTTTCCT
CCGTGCATACGTCAGAAACGGCGCCTCGCAAGTCTTTGTTTTTTTACCTC
AACGAAGTAAACACAAACCGTTACCTTGCAATCGGCAAATCAGACGCAGA
CGGCTCGTGTGCAAGGTTGCTCTCCGAAAAGACACCCATTGCCATGAACC
TCTCTGGTTCGCTAGGGAACGTCAACCTCGGCCTTCTCCAAGGTCAACGA
TATCACTCTGTGCAATGGCTCATGGCAGGTCCGAGGGGTCGCTTGGAAAT
GCGCAAGGACAGAGGGTCTTGGGAAACATTTAAGATTGAATATGTGCAAC
AATCCTACAACGTTGAACTTGCACGCTTGCCGGTTCCACCATACTATTCG
ATTGCAGAGGAAGTGACCCGCGAGATGCTAAGATGTGAAATCACGGCCAG
AATTGCGGTCGCCAAAGGCGAAGCTACCCCTCCGCCGGCGGCTCAGTCGG
GAAGCGCTTCATCGGCATTTGACCATGCAGCAGCACTTGCTGGTCTTTCA
GACGCTCCGAAAACCCCCAAGTCTCCAGCTTCGGACCAAAACAAACAGGG
GGCGAAAAAGAAACCCTCCGCTGCAGAACAACCACGCCCCGCCCCGAAGA
AGGCGGACTCGGCCGCTGTGAAAGCCGCAGCAGCAGCTTCTGCGTCTTCA
ACACTTCCAAGGAACAAAGCAAACCGCAAGGCAGCCAAAAAGAACAGGAG
GAAGCAGAAGGGGAAACAGTCAAAAACGTCTTCCACACGAAGTCAAGCGA
GCCGTGCAAAACCATCTACTGGCAATGGACCTGCAGATGACGTCACACCG
GCAGCACAAGCAGAAGAAAGCAAGAAACAAGAGAAAATCCCGCAGACGAC
ACCGGAAGAGCCTTCCTCTTCCTCGGCTTCTGCCGCAAGCTCCAATGTTC
AAGGGCCGAAGTGCGCTGCCTGTGGTTTCGCATTGACGGGCTCAGTGACG
AAGGCGATGGGGAAAGAGTTTCATGCGCAATGCTTTTGCTGTGGCATGTG
TCGACGACCAATGTCCATAGGCCCCAGCCAGTTCCGAGAACGAAACGGGA
TTCCGTTTTGCAATCCTTGTTATGCGAACAAAATTGCCTCGCGGTGTGCG
CGGTGTTCGCAACCAATCATGGAAACGGTCGTTACCGCGATGGACAAGAC
ATGGCACAAGGAGTGTCTGACGTGCACAATTTGCAGACTTCCTTTGACAC
AGACCTTCTGGCTCTACGCCGATAA
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Coding sequence (CDS) from alignment at ScGOVlb_647:361549..363473+

>Gvermi13850.t1 ID=Gvermi13850.t1|Name=Gvermi13850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1815bp|location=Sequence derived from alignment at ScGOVlb_647:361549..363473+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTTGTTCGAGCGCCCCAACGCGTTCCAGATCACCGCGCTGCTGCG
GCTCGGCTTTGCCGCCCGTCTTCGGTCTGAAACCGCCGACACCTTCCTTG
CGCACAACTCCGAAACCCTCGTGCGAACCGACGCGCGCAAGGATGCCGCC
GTGCTCTACTTCATGTCCGGCGACAACACCTCGGTCCTCAAGCCGATTCA
GACGCTGGTGCTGCTGCAACACGCCGAGCACCGCGCGACAAAGTTTCTCA
CGTTTGTGGACACCCCGCTGCTCTCGGAGGCGCCCACGCTGCTCATGCTG
CAGATGAAGGACGCCCCAAGCCCTCGGCGCATGCTGTTTTCGCTCAGTTC
GCTCTCCAAGCCGCCGCGCTACCTCAGCGTGCGCAACGTCAAACGCGGCC
AAAGTGCGCACCTGCGCAACGAGCGCACCAATTGCGAACTGTTTCACCTG
GAAATCATCCCCGGTTCGCTCGGATCCGGGGTGCGAGCCTCCCCGGTTCC
GTTCGTGTCGTCGTTCCTGACGGTGCCGGAGGCCATCTCGCAGATGCTCT
TGTTGCTCGGCGTGCGTTTCAGGCTCCGGTCGGTCCATGACCGCGTCCTG
CACAGGGACCTCGCGCAGCACGACCAAATCCTCGTGCGTCAAACCGGCGA
GCGCACCGATATCAATTCCAGTCGCGACCGTGACCTGGTCTTCGTTTCCT
CCGTGCATACGTCAGAAACGGCGCCTCGCAAGTCTTTGTTTTTTTACCTC
AACGAAGTAAACACAAACCGTTACCTTGCAATCGGCAAATCAGACGCAGA
CGGCTCGTGTGCAAGGTTGCTCTCCGAAAAGACACCCATTGCCATGAACC
TCTCTGGTTCGCTAGGGAACGTCAACCTCGGCCTTCTCCAAGGTCAACGA
TATCACTCTGTGCAATGGCTCATGGCAGGTCCGAGGGGTCGCTTGGAAAT
GCGCAAGGACAGAGGGTCTTGGGAAACATTTAAGATTGAATATGTGCAAC
AATCCTACAACGTTGAACTTGCACGCTTGCCGGTTCCACCATACTATTCG
ATTGCAGAGGAAGTGACCCGCGAGATGCTAAGATGTGAAATCACGGCCAG
AATTGCGGTCGCCAAAGGCGAAGCTACCCCTCCGCCGGCGGCTCAGTCGG
GAAGCGCTTCATCGGCATTTGACCATGCAGCAGCACTTGCTGGTCTTTCA
GACGCTCCGAAAACCCCCAAGTCTCCAGCTTCGGACCAAAACAAACAGGG
GGCGAAAAAGAAACCCTCCGCTGCAGAACAACCACGCCCCGCCCCGAAGA
AGGCGGACTCGGCCGCTGTGAAAGCCGCAGCAGCAGCTTCTGCGTCTTCA
ACACTTCCAAGGAACAAAGCAAACCGCAAGGCAGCCAAAAAGAACAGGAG
GAAGCAGAAGGGGAAACAGTCAAAAACGTCTTCCACACGAAGTCAAGCGA
GCCGTGCAAAACCATCTACTGGCAATGGACCTGCAGATGACGTCACACCG
GCAGCACAAGCAGAAGAAAGCAAGAAACAAGAGAAAATCCCGCAGACGAC
ACCGGAAGAGCCTTCCTCTTCCTCGGCTTCTGCCGCAAGCTCCAATGTTC
AAGGGCCGAAGCCCCAGCCAGTTCCGAGAACGAAACGGGATTCCGTTTTG
CAATCCTTGTTATGCGAACAAAATTGCCTCGCGGTGTGCGCGGTGTTCGC
AACCAATCATGGAAACGGTCGTTACCGCGATGGACAAGACATGGCACAAG
GAGTGTCTGACGTGCACAATTTGCAGACTTCCTTTGACACAGACCTTCTG
GCTCTACGCCGATAA
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