Gvermi13808.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13808.t1
Unique NameGvermi13808.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length362
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:206095..207180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog426355.Mrad2831_2091
PFAMsMethyltransf_21
Max annot lvl28211|Alphaproteobacteria
Evalue5.9e-07
EggNOG OGsCOG2242@1|root,COG2242@2|Bacteria,1R06P@1224|Proteobacteria,2TYKJ@28211|Alphaproteobacteria,1JWK2@119045|Methylobacteriaceae
DescriptionTIGRFAM methyltransferase FkbM family
COG categoryH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13808Gvermi13808Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 206095..207180 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13808.t1.start1Gvermi13808.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 206095..206097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13808.t1.CDS1Gvermi13808.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 206095..207180 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13808.t1.exon1Gvermi13808.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 206095..207180 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13808.t1.stop1Gvermi13808.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 207178..207180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13808.t1Gvermi13808.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 206095..207180 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13808.t1 ID=Gvermi13808.t1|Name=Gvermi13808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=362bp
MRLKQLSRHMRPRLPPTSYSAVLCAALLVLLSVLSLLLTRLPRFPPPTLF
PLAAHPARPAPAAEAAPAADALPTSVLHPHLHAANLSHYSFHQGRVKDEL
LRLASASAADAVVVVGVSYGEEVMRFARAGRRIFAFEPMPFAVESLRRSL
HRARPPLDVQLFEMAASDAADPAPSFNVTYKGRTVAVRSDRVDNHVPPSV
PVAAMSVDIQGEELHAVQGASRLLPRVRTLWVEIKACGQHNVQLLRLLDP
HYALFDFVPWGQPAADPAAATAAASVRHRSAFALHPQRPSEIDAYCQWLC
QARRHAFDWLQNDVLAVRRDLLLGPSGAELLRALSQVHRRGCAHGGCRLR
ELLAAAPQPSQ*
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spliced messenger RNA

>Gvermi13808.t1 ID=Gvermi13808.t1|Name=Gvermi13808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at ScGOVlb_647:206095..207180+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCTTAAACAGCTCTCCAGACATATGCGCCCCAGACTGCCGCCCAC
ATCGTACTCCGCCGTGTTGTGCGCCGCGCTGCTCGTGCTGCTGTCCGTGC
TCTCGCTTCTGCTCACACGCCTGCCGCGCTTCCCGCCGCCCACCCTGTTC
CCGCTCGCCGCCCACCCCGCCCGCCCCGCCCCCGCCGCCGAAGCCGCCCC
CGCCGCAGATGCGCTGCCCACCTCCGTCCTCCACCCCCACCTGCACGCCG
CCAACCTGTCGCACTACTCCTTCCACCAGGGCCGCGTCAAGGACGAGCTG
CTGCGCCTCGCCTCCGCCTCCGCCGCCGACGCCGTCGTCGTCGTCGGTGT
CAGCTACGGCGAGGAGGTCATGCGCTTTGCGCGCGCCGGCCGCCGCATCT
TCGCCTTCGAGCCCATGCCCTTCGCCGTCGAGAGCCTGCGCCGCTCGCTG
CACCGCGCCCGCCCCCCGCTCGACGTCCAGCTCTTCGAGATGGCCGCGTC
CGACGCCGCCGACCCGGCGCCCTCGTTCAACGTCACGTACAAGGGGCGCA
CCGTCGCCGTGCGCTCCGACCGCGTCGACAACCACGTCCCGCCCTCCGTC
CCGGTCGCCGCCATGAGCGTCGACATCCAGGGCGAGGAGCTGCACGCCGT
GCAGGGCGCCTCGCGCCTGCTCCCGCGCGTGCGCACCCTGTGGGTCGAGA
TCAAGGCGTGCGGCCAGCACAACGTCCAGCTGCTGCGCCTGCTGGACCCG
CACTACGCCCTCTTCGACTTTGTGCCATGGGGGCAGCCCGCCGCAGACCC
CGCCGCCGCCACCGCCGCCGCCTCCGTGCGCCACCGCTCCGCCTTTGCGC
TGCACCCGCAGCGCCCCTCCGAAATCGACGCCTACTGCCAGTGGCTGTGC
CAAGCCCGCCGCCACGCCTTCGACTGGCTGCAGAACGACGTGCTGGCCGT
GCGCCGCGACCTGCTGCTGGGCCCCTCCGGCGCCGAGCTGCTGCGCGCCC
TCTCGCAAGTCCACCGCCGCGGCTGCGCCCACGGCGGCTGCCGGCTGCGC
GAGCTGCTGGCCGCCGCGCCGCAGCCGTCGCAGTGA
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protein sequence of Gvermi13808.t1

>Gvermi13808.t1 ID=Gvermi13808.t1|Name=Gvermi13808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=362bp
MRLKQLSRHMRPRLPPTSYSAVLCAALLVLLSVLSLLLTRLPRFPPPTLF
PLAAHPARPAPAAEAAPAADALPTSVLHPHLHAANLSHYSFHQGRVKDEL
LRLASASAADAVVVVGVSYGEEVMRFARAGRRIFAFEPMPFAVESLRRSL
HRARPPLDVQLFEMAASDAADPAPSFNVTYKGRTVAVRSDRVDNHVPPSV
PVAAMSVDIQGEELHAVQGASRLLPRVRTLWVEIKACGQHNVQLLRLLDP
HYALFDFVPWGQPAADPAAATAAASVRHRSAFALHPQRPSEIDAYCQWLC
QARRHAFDWLQNDVLAVRRDLLLGPSGAELLRALSQVHRRGCAHGGCRLR
ELLAAAPQPSQ*
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mRNA from alignment at ScGOVlb_647:206095..207180+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13808.t1 ID=Gvermi13808.t1|Name=Gvermi13808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at ScGOVlb_647:206095..207180+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCCTTAAACAGCTCTCCAGACATATGCGCCCCAGACTGCCGCCCAC
ATCGTACTCCGCCGTGTTGTGCGCCGCGCTGCTCGTGCTGCTGTCCGTGC
TCTCGCTTCTGCTCACACGCCTGCCGCGCTTCCCGCCGCCCACCCTGTTC
CCGCTCGCCGCCCACCCCGCCCGCCCCGCCCCCGCCGCCGAAGCCGCCCC
CGCCGCAGATGCGCTGCCCACCTCCGTCCTCCACCCCCACCTGCACGCCG
CCAACCTGTCGCACTACTCCTTCCACCAGGGCCGCGTCAAGGACGAGCTG
CTGCGCCTCGCCTCCGCCTCCGCCGCCGACGCCGTCGTCGTCGTCGGTGT
CAGCTACGGCGAGGAGGTCATGCGCTTTGCGCGCGCCGGCCGCCGCATCT
TCGCCTTCGAGCCCATGCCCTTCGCCGTCGAGAGCCTGCGCCGCTCGCTG
CACCGCGCCCGCCCCCCGCTCGACGTCCAGCTCTTCGAGATGGCCGCGTC
CGACGCCGCCGACCCGGCGCCCTCGTTCAACGTCACGTACAAGGGGCGCA
CCGTCGCCGTGCGCTCCGACCGCGTCGACAACCACGTCCCGCCCTCCGTC
CCGGTCGCCGCCATGAGCGTCGACATCCAGGGCGAGGAGCTGCACGCCGT
GCAGGGCGCCTCGCGCCTGCTCCCGCGCGTGCGCACCCTGTGGGTCGAGA
TCAAGGCGTGCGGCCAGCACAACGTCCAGCTGCTGCGCCTGCTGGACCCG
CACTACGCCCTCTTCGACTTTGTGCCATGGGGGCAGCCCGCCGCAGACCC
CGCCGCCGCCACCGCCGCCGCCTCCGTGCGCCACCGCTCCGCCTTTGCGC
TGCACCCGCAGCGCCCCTCCGAAATCGACGCCTACTGCCAGTGGCTGTGC
CAAGCCCGCCGCCACGCCTTCGACTGGCTGCAGAACGACGTGCTGGCCGT
GCGCCGCGACCTGCTGCTGGGCCCCTCCGGCGCCGAGCTGCTGCGCGCCC
TCTCGCAAGTCCACCGCCGCGGCTGCGCCCACGGCGGCTGCCGGCTGCGC
GAGCTGCTGGCCGCCGCGCCGCAGCCGTCGCAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_647:206095..207180+

>Gvermi13808.t1 ID=Gvermi13808.t1|Name=Gvermi13808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1086bp|location=Sequence derived from alignment at ScGOVlb_647:206095..207180+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCCTTAAACAGCTCTCCAGACATATGCGCCCCAGACTGCCGCCCAC
ATCGTACTCCGCCGTGTTGTGCGCCGCGCTGCTCGTGCTGCTGTCCGTGC
TCTCGCTTCTGCTCACACGCCTGCCGCGCTTCCCGCCGCCCACCCTGTTC
CCGCTCGCCGCCCACCCCGCCCGCCCCGCCCCCGCCGCCGAAGCCGCCCC
CGCCGCAGATGCGCTGCCCACCTCCGTCCTCCACCCCCACCTGCACGCCG
CCAACCTGTCGCACTACTCCTTCCACCAGGGCCGCGTCAAGGACGAGCTG
CTGCGCCTCGCCTCCGCCTCCGCCGCCGACGCCGTCGTCGTCGTCGGTGT
CAGCTACGGCGAGGAGGTCATGCGCTTTGCGCGCGCCGGCCGCCGCATCT
TCGCCTTCGAGCCCATGCCCTTCGCCGTCGAGAGCCTGCGCCGCTCGCTG
CACCGCGCCCGCCCCCCGCTCGACGTCCAGCTCTTCGAGATGGCCGCGTC
CGACGCCGCCGACCCGGCGCCCTCGTTCAACGTCACGTACAAGGGGCGCA
CCGTCGCCGTGCGCTCCGACCGCGTCGACAACCACGTCCCGCCCTCCGTC
CCGGTCGCCGCCATGAGCGTCGACATCCAGGGCGAGGAGCTGCACGCCGT
GCAGGGCGCCTCGCGCCTGCTCCCGCGCGTGCGCACCCTGTGGGTCGAGA
TCAAGGCGTGCGGCCAGCACAACGTCCAGCTGCTGCGCCTGCTGGACCCG
CACTACGCCCTCTTCGACTTTGTGCCATGGGGGCAGCCCGCCGCAGACCC
CGCCGCCGCCACCGCCGCCGCCTCCGTGCGCCACCGCTCCGCCTTTGCGC
TGCACCCGCAGCGCCCCTCCGAAATCGACGCCTACTGCCAGTGGCTGTGC
CAAGCCCGCCGCCACGCCTTCGACTGGCTGCAGAACGACGTGCTGGCCGT
GCGCCGCGACCTGCTGCTGGGCCCCTCCGGCGCCGAGCTGCTGCGCGCCC
TCTCGCAAGTCCACCGCCGCGGCTGCGCCCACGGCGGCTGCCGGCTGCGC
GAGCTGCTGGCCGCCGCGCCGCAGCCGTCGCAGTGA
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