Gvermi7654.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7654.t1
Unique NameGvermi7654.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length274
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1391107..1391928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36331.EPrPI00000025374
PFAMsAIG1,MMR_HSR1
Max annot lvl121069|Pythiales
Evalue2.45e-12
EggNOG OGs28ND8@1|root,2QUYQ@2759|Eukaryota,1MI42@121069|Pythiales
Descriptionfunction. Source PGD
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7654Gvermi7654Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1391107..1391928 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7654.t1.start1Gvermi7654.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1391107..1391109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7654.t1.CDS1Gvermi7654.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1391107..1391928 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7654.t1.exon1Gvermi7654.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1391107..1391928 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7654.t1.stop1Gvermi7654.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1391926..1391928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7654.t1Gvermi7654.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1391107..1391928 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7654.t1 ID=Gvermi7654.t1|Name=Gvermi7654.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=274bp
MSFFARPLVFHWDDCGSLKPPLHRTHPVYSAVNPTLITMVRREHIIFAGL
PGSGVSYIVNAIVGNAVFESGTKFGGDEAPTALTTKRVKCTTYSRAERLG
DPRQLEKAAAEIASVLEKGTNVKLIFVIQLEAGRLLSPDVAVMAHILNTV
RERHGDPSNRFSIIVNKCSPEEFELFKSRRNRKKLESVLWTLIPTGFVRF
VPWLHDAEDTGQVQFNHQRSVLHGVVRNTPLLAHADAKHVRKHCNPRRCS
LNSAQLASQQRARCADFRTKEVH*
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spliced messenger RNA

>Gvermi7654.t1 ID=Gvermi7654.t1|Name=Gvermi7654.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=822bp|location=Sequence derived from alignment at ScGOVlb_64:1391107..1391928+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTTCTTCGCCCGGCCCCTCGTCTTTCACTGGGACGACTGTGGCTC
TCTTAAACCCCCTTTGCACCGCACCCATCCGGTCTACTCCGCCGTCAATC
CCACGCTAATTACCATGGTACGGCGAGAGCACATCATCTTCGCCGGGCTT
CCCGGCTCGGGTGTATCCTACATCGTCAATGCAATCGTTGGCAATGCCGT
ATTCGAGTCTGGAACGAAATTCGGCGGCGATGAGGCGCCAACTGCGCTCA
CTACGAAGAGGGTCAAATGTACCACATACTCCAGAGCGGAGAGGCTGGGC
GACCCGCGCCAACTCGAGAAAGCCGCCGCGGAAATTGCATCCGTGCTCGA
GAAGGGCACCAATGTCAAGCTCATCTTCGTGATTCAGCTGGAGGCGGGTC
GCCTGCTAAGCCCTGACGTCGCAGTCATGGCGCACATTTTGAACACGGTG
CGAGAGAGACACGGCGATCCGTCCAACAGGTTTTCCATCATCGTCAACAA
ATGCTCGCCGGAGGAGTTCGAACTGTTCAAGAGCAGGCGCAACAGGAAGA
AGCTTGAGTCGGTGTTGTGGACCCTCATCCCGACCGGATTCGTGCGGTTC
GTGCCGTGGCTACATGACGCGGAAGACACCGGGCAAGTGCAGTTCAATCA
CCAGCGTTCAGTGCTTCACGGCGTGGTTAGGAACACGCCTCTTCTGGCGC
ATGCCGACGCCAAGCATGTTCGAAAGCACTGCAACCCGCGGCGGTGCTCG
TTGAATAGTGCGCAGCTGGCGTCGCAACAGCGAGCGCGATGCGCTGATTT
CCGCACCAAGGAAGTTCATTAG
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protein sequence of Gvermi7654.t1

>Gvermi7654.t1 ID=Gvermi7654.t1|Name=Gvermi7654.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=274bp
MSFFARPLVFHWDDCGSLKPPLHRTHPVYSAVNPTLITMVRREHIIFAGL
PGSGVSYIVNAIVGNAVFESGTKFGGDEAPTALTTKRVKCTTYSRAERLG
DPRQLEKAAAEIASVLEKGTNVKLIFVIQLEAGRLLSPDVAVMAHILNTV
RERHGDPSNRFSIIVNKCSPEEFELFKSRRNRKKLESVLWTLIPTGFVRF
VPWLHDAEDTGQVQFNHQRSVLHGVVRNTPLLAHADAKHVRKHCNPRRCS
LNSAQLASQQRARCADFRTKEVH*
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mRNA from alignment at ScGOVlb_64:1391107..1391928+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7654.t1 ID=Gvermi7654.t1|Name=Gvermi7654.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=822bp|location=Sequence derived from alignment at ScGOVlb_64:1391107..1391928+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCTTCTTCGCCCGGCCCCTCGTCTTTCACTGGGACGACTGTGGCTC
TCTTAAACCCCCTTTGCACCGCACCCATCCGGTCTACTCCGCCGTCAATC
CCACGCTAATTACCATGGTACGGCGAGAGCACATCATCTTCGCCGGGCTT
CCCGGCTCGGGTGTATCCTACATCGTCAATGCAATCGTTGGCAATGCCGT
ATTCGAGTCTGGAACGAAATTCGGCGGCGATGAGGCGCCAACTGCGCTCA
CTACGAAGAGGGTCAAATGTACCACATACTCCAGAGCGGAGAGGCTGGGC
GACCCGCGCCAACTCGAGAAAGCCGCCGCGGAAATTGCATCCGTGCTCGA
GAAGGGCACCAATGTCAAGCTCATCTTCGTGATTCAGCTGGAGGCGGGTC
GCCTGCTAAGCCCTGACGTCGCAGTCATGGCGCACATTTTGAACACGGTG
CGAGAGAGACACGGCGATCCGTCCAACAGGTTTTCCATCATCGTCAACAA
ATGCTCGCCGGAGGAGTTCGAACTGTTCAAGAGCAGGCGCAACAGGAAGA
AGCTTGAGTCGGTGTTGTGGACCCTCATCCCGACCGGATTCGTGCGGTTC
GTGCCGTGGCTACATGACGCGGAAGACACCGGGCAAGTGCAGTTCAATCA
CCAGCGTTCAGTGCTTCACGGCGTGGTTAGGAACACGCCTCTTCTGGCGC
ATGCCGACGCCAAGCATGTTCGAAAGCACTGCAACCCGCGGCGGTGCTCG
TTGAATAGTGCGCAGCTGGCGTCGCAACAGCGAGCGCGATGCGCTGATTT
CCGCACCAAGGAAGTTCATTAG
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Coding sequence (CDS) from alignment at ScGOVlb_64:1391107..1391928+

>Gvermi7654.t1 ID=Gvermi7654.t1|Name=Gvermi7654.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=822bp|location=Sequence derived from alignment at ScGOVlb_64:1391107..1391928+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCTTCTTCGCCCGGCCCCTCGTCTTTCACTGGGACGACTGTGGCTC
TCTTAAACCCCCTTTGCACCGCACCCATCCGGTCTACTCCGCCGTCAATC
CCACGCTAATTACCATGGTACGGCGAGAGCACATCATCTTCGCCGGGCTT
CCCGGCTCGGGTGTATCCTACATCGTCAATGCAATCGTTGGCAATGCCGT
ATTCGAGTCTGGAACGAAATTCGGCGGCGATGAGGCGCCAACTGCGCTCA
CTACGAAGAGGGTCAAATGTACCACATACTCCAGAGCGGAGAGGCTGGGC
GACCCGCGCCAACTCGAGAAAGCCGCCGCGGAAATTGCATCCGTGCTCGA
GAAGGGCACCAATGTCAAGCTCATCTTCGTGATTCAGCTGGAGGCGGGTC
GCCTGCTAAGCCCTGACGTCGCAGTCATGGCGCACATTTTGAACACGGTG
CGAGAGAGACACGGCGATCCGTCCAACAGGTTTTCCATCATCGTCAACAA
ATGCTCGCCGGAGGAGTTCGAACTGTTCAAGAGCAGGCGCAACAGGAAGA
AGCTTGAGTCGGTGTTGTGGACCCTCATCCCGACCGGATTCGTGCGGTTC
GTGCCGTGGCTACATGACGCGGAAGACACCGGGCAAGTGCAGTTCAATCA
CCAGCGTTCAGTGCTTCACGGCGTGGTTAGGAACACGCCTCTTCTGGCGC
ATGCCGACGCCAAGCATGTTCGAAAGCACTGCAACCCGCGGCGGTGCTCG
TTGAATAGTGCGCAGCTGGCGTCGCAACAGCGAGCGCGATGCGCTGATTT
CCGCACCAAGGAAGTTCATTAG
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