Gvermi7693.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7693.t1
Unique Name	Gvermi7693.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	296

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_64	contig	ScGOVlb_64:2635279..2636166 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7029.ACYPI009749-PA
PFAMs	Pkinase
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K08958
KEGG Pathway	ko04340,ko04341,map04340,map04341
Evalue	3.34e-42
EggNOG OGs	KOG1164@1\|root,KOG1165@2759\|Eukaryota,38BTT@33154\|Opisthokonta,3BE4B@33208\|Metazoa,3CS1U@33213\|Bilateria,41WJD@6656\|Arthropoda,3SGCP@50557\|Insecta
EC	2.7.11.1
Description	protein serine threonine kinase activity. It is involved in the biological process described with protein phosphorylation
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7693	Gvermi7693	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_64 2635279..2636166 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7693.t1.start1	Gvermi7693.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_64 2635279..2635281 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7693.t1.CDS1	Gvermi7693.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_64 2635279..2636166 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7693.t1.exon1	Gvermi7693.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_64 2635279..2636166 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7693.t1.stop1	Gvermi7693.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_64 2636164..2636166 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7693.t1	Gvermi7693.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_64 2635279..2636166 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_64:2635279..2636166+
coding sequence from alignment at ScGOVlb_64:2635279..2636166+

mRNA sequence

>Gvermi7693.t1 ID=Gvermi7693.t1|Name=Gvermi7693.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=296bp
MPLHSSTVLNDEYRMIKRLGSGGQGEVYLAQDEAQEKFAVKVSKSESSLK
HEYKMYKVLGTHKYSRKHFPSVYLFKTMNNYSFLVMTLLEKSLDDLLSDC
GGRLSMVCVLKIGLQVIKIVEQMHSKGILHLDLKPGNIMTSTKGSRKNTM
HVVDFGMSDGYISKHTGSHVSKGVVTHAYGTTLFMSIGAHRYKVPCRRDD
MESLGYTLLFLAKGRLPWSQRRNPFQSIGLKDTENMKSKMCLREMCSGTS
GMFSYMKMIANMSFSEKPKYSQLISNMKKSLHQLAGRARPKFDWE*

spliced messenger RNA

>Gvermi7693.t1 ID=Gvermi7693.t1|Name=Gvermi7693.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=888bp|location=Sequence derived from alignment at ScGOVlb_64:2635279..2636166+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCTCCACAGTTCCACAGTACTGAACGATGAGTACCGCATGATAAA
GCGATTGGGTTCCGGAGGACAAGGCGAAGTATATCTTGCACAAGATGAAG
CACAAGAGAAATTTGCTGTGAAGGTATCAAAAAGCGAAAGCTCCCTGAAA
CATGAATACAAAATGTACAAAGTGTTGGGAACGCACAAGTACTCCAGAAA
ACACTTTCCAAGCGTGTATCTCTTTAAAACAATGAACAACTACAGTTTTT
TGGTGATGACTTTGCTTGAAAAATCTCTTGATGACTTATTGAGCGATTGT
GGTGGACGTTTATCGATGGTTTGTGTTTTGAAGATTGGATTACAGGTGAT
TAAGATAGTTGAGCAAATGCATTCAAAGGGGATTCTGCATCTGGATTTGA
AACCGGGAAATATCATGACCAGTACCAAAGGATCTCGAAAAAATACGATG
CATGTAGTTGATTTTGGGATGTCTGACGGGTACATTTCGAAGCACACGGG
AAGTCATGTATCAAAAGGAGTGGTGACACATGCATATGGCACAACTTTGT
TCATGTCAATTGGAGCTCATCGTTATAAAGTACCTTGTCGACGAGACGAT
ATGGAGAGTTTAGGTTATACTCTGTTGTTTTTGGCAAAAGGTAGACTTCC
ATGGTCGCAGAGAAGAAATCCATTTCAAAGTATTGGACTTAAAGACACTG
AGAATATGAAGAGCAAAATGTGTCTGAGGGAAATGTGCAGCGGTACGAGC
GGAATGTTCAGCTACATGAAAATGATAGCCAATATGTCGTTTTCCGAAAA
GCCGAAGTATTCACAATTGATCTCGAATATGAAAAAATCTCTTCATCAAT
TAGCAGGTAGAGCGCGCCCAAAGTTTGATTGGGAATGA

protein sequence of Gvermi7693.t1

>Gvermi7693.t1 ID=Gvermi7693.t1|Name=Gvermi7693.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=296bp
MPLHSSTVLNDEYRMIKRLGSGGQGEVYLAQDEAQEKFAVKVSKSESSLK
HEYKMYKVLGTHKYSRKHFPSVYLFKTMNNYSFLVMTLLEKSLDDLLSDC
GGRLSMVCVLKIGLQVIKIVEQMHSKGILHLDLKPGNIMTSTKGSRKNTM
HVVDFGMSDGYISKHTGSHVSKGVVTHAYGTTLFMSIGAHRYKVPCRRDD
MESLGYTLLFLAKGRLPWSQRRNPFQSIGLKDTENMKSKMCLREMCSGTS
GMFSYMKMIANMSFSEKPKYSQLISNMKKSLHQLAGRARPKFDWE*

mRNA from alignment at ScGOVlb_64:2635279..2636166+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7693.t1 ID=Gvermi7693.t1|Name=Gvermi7693.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=888bp|location=Sequence derived from alignment at ScGOVlb_64:2635279..2636166+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCTCCACAGTTCCACAGTACTGAACGATGAGTACCGCATGATAAA
GCGATTGGGTTCCGGAGGACAAGGCGAAGTATATCTTGCACAAGATGAAG
CACAAGAGAAATTTGCTGTGAAGGTATCAAAAAGCGAAAGCTCCCTGAAA
CATGAATACAAAATGTACAAAGTGTTGGGAACGCACAAGTACTCCAGAAA
ACACTTTCCAAGCGTGTATCTCTTTAAAACAATGAACAACTACAGTTTTT
TGGTGATGACTTTGCTTGAAAAATCTCTTGATGACTTATTGAGCGATTGT
GGTGGACGTTTATCGATGGTTTGTGTTTTGAAGATTGGATTACAGGTGAT
TAAGATAGTTGAGCAAATGCATTCAAAGGGGATTCTGCATCTGGATTTGA
AACCGGGAAATATCATGACCAGTACCAAAGGATCTCGAAAAAATACGATG
CATGTAGTTGATTTTGGGATGTCTGACGGGTACATTTCGAAGCACACGGG
AAGTCATGTATCAAAAGGAGTGGTGACACATGCATATGGCACAACTTTGT
TCATGTCAATTGGAGCTCATCGTTATAAAGTACCTTGTCGACGAGACGAT
ATGGAGAGTTTAGGTTATACTCTGTTGTTTTTGGCAAAAGGTAGACTTCC
ATGGTCGCAGAGAAGAAATCCATTTCAAAGTATTGGACTTAAAGACACTG
AGAATATGAAGAGCAAAATGTGTCTGAGGGAAATGTGCAGCGGTACGAGC
GGAATGTTCAGCTACATGAAAATGATAGCCAATATGTCGTTTTCCGAAAA
GCCGAAGTATTCACAATTGATCTCGAATATGAAAAAATCTCTTCATCAAT
TAGCAGGTAGAGCGCGCCCAAAGTTTGATTGGGAATGA

Coding sequence (CDS) from alignment at ScGOVlb_64:2635279..2636166+

>Gvermi7693.t1 ID=Gvermi7693.t1|Name=Gvermi7693.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=888bp|location=Sequence derived from alignment at ScGOVlb_64:2635279..2636166+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCTCCACAGTTCCACAGTACTGAACGATGAGTACCGCATGATAAA
GCGATTGGGTTCCGGAGGACAAGGCGAAGTATATCTTGCACAAGATGAAG
CACAAGAGAAATTTGCTGTGAAGGTATCAAAAAGCGAAAGCTCCCTGAAA
CATGAATACAAAATGTACAAAGTGTTGGGAACGCACAAGTACTCCAGAAA
ACACTTTCCAAGCGTGTATCTCTTTAAAACAATGAACAACTACAGTTTTT
TGGTGATGACTTTGCTTGAAAAATCTCTTGATGACTTATTGAGCGATTGT
GGTGGACGTTTATCGATGGTTTGTGTTTTGAAGATTGGATTACAGGTGAT
TAAGATAGTTGAGCAAATGCATTCAAAGGGGATTCTGCATCTGGATTTGA
AACCGGGAAATATCATGACCAGTACCAAAGGATCTCGAAAAAATACGATG
CATGTAGTTGATTTTGGGATGTCTGACGGGTACATTTCGAAGCACACGGG
AAGTCATGTATCAAAAGGAGTGGTGACACATGCATATGGCACAACTTTGT
TCATGTCAATTGGAGCTCATCGTTATAAAGTACCTTGTCGACGAGACGAT
ATGGAGAGTTTAGGTTATACTCTGTTGTTTTTGGCAAAAGGTAGACTTCC
ATGGTCGCAGAGAAGAAATCCATTTCAAAGTATTGGACTTAAAGACACTG
AGAATATGAAGAGCAAAATGTGTCTGAGGGAAATGTGCAGCGGTACGAGC
GGAATGTTCAGCTACATGAAAATGATAGCCAATATGTCGTTTTCCGAAAA
GCCGAAGTATTCACAATTGATCTCGAATATGAAAAAATCTCTTCATCAAT
TAGCAGGTAGAGCGCGCCCAAAGTTTGATTGGGAATGA