Gvermi7660.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7660.t1
Unique NameGvermi7660.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length192
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1492167..1492742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_012421-tr
PFAMsRVT_1,Retrotrans_gag,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
Max annot lvl33208|Metazoa
Evalue1.72e-39
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria
DescriptionK02A2.6-like
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7660Gvermi7660Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1492167..1492742 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7660.t1.stop1Gvermi7660.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1492167..1492169 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7660.t1.CDS1Gvermi7660.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1492167..1492742 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7660.t1.exon1Gvermi7660.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1492167..1492742 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7660.t1.start1Gvermi7660.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1492740..1492742 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7660.t1Gvermi7660.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1492167..1492742 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7660.t1 ID=Gvermi7660.t1|Name=Gvermi7660.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=192bp
MAFVCHSGSYCFKRMPFGLTNAPDTFQRAIDILLNRFKWRTCLVYLDDII
FFSSNLDDHLTHVKEVMTVLRNAGISLKLRKCEFFTDTIKHLGHIIRLGR
LMIEQARVKFLTEANEPRTETELRSFLGLVNVYRRFIPRFSYMAAPLNAV
LRKGQPPKLEPFNAVQTEAFQSLIQAVTTAPILSLPKSGLP*
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spliced messenger RNA

>Gvermi7660.t1 ID=Gvermi7660.t1|Name=Gvermi7660.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=576bp|location=Sequence derived from alignment at ScGOVlb_64:1492167..1492742- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTCGTCTGTCACTCTGGGTCGTACTGCTTTAAGCGGATGCCATT
TGGTCTAACCAACGCACCGGATACCTTTCAAAGGGCGATCGACATACTGT
TGAACCGCTTCAAGTGGCGCACGTGCTTGGTCTACCTGGATGATATCATC
TTCTTTTCCAGCAATCTGGATGACCACTTGACTCACGTCAAGGAGGTGAT
GACCGTACTCCGCAACGCGGGAATCAGCCTCAAGCTGAGGAAATGTGAGT
TCTTCACAGATACAATCAAACATCTGGGCCACATCATCCGTCTAGGACGG
CTTATGATCGAGCAAGCTCGCGTCAAATTCCTCACAGAGGCAAACGAACC
GCGCACGGAAACGGAACTTCGATCCTTCCTGGGACTCGTCAACGTCTACC
GACGGTTCATCCCGCGCTTTTCGTACATGGCCGCACCGCTTAACGCGGTA
CTGCGGAAAGGCCAGCCACCTAAACTGGAACCCTTCAATGCCGTACAAAC
GGAAGCGTTTCAATCACTGATCCAGGCTGTCACGACGGCCCCGATTCTCT
CGTTGCCCAAATCGGGATTACCGTAA
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protein sequence of Gvermi7660.t1

>Gvermi7660.t1 ID=Gvermi7660.t1|Name=Gvermi7660.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=192bp
MAFVCHSGSYCFKRMPFGLTNAPDTFQRAIDILLNRFKWRTCLVYLDDII
FFSSNLDDHLTHVKEVMTVLRNAGISLKLRKCEFFTDTIKHLGHIIRLGR
LMIEQARVKFLTEANEPRTETELRSFLGLVNVYRRFIPRFSYMAAPLNAV
LRKGQPPKLEPFNAVQTEAFQSLIQAVTTAPILSLPKSGLP*
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mRNA from alignment at ScGOVlb_64:1492167..1492742-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7660.t1 ID=Gvermi7660.t1|Name=Gvermi7660.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=576bp|location=Sequence derived from alignment at ScGOVlb_64:1492167..1492742- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTTCGTCTGTCACTCTGGGTCGTACTGCTTTAAGCGGATGCCATT
TGGTCTAACCAACGCACCGGATACCTTTCAAAGGGCGATCGACATACTGT
TGAACCGCTTCAAGTGGCGCACGTGCTTGGTCTACCTGGATGATATCATC
TTCTTTTCCAGCAATCTGGATGACCACTTGACTCACGTCAAGGAGGTGAT
GACCGTACTCCGCAACGCGGGAATCAGCCTCAAGCTGAGGAAATGTGAGT
TCTTCACAGATACAATCAAACATCTGGGCCACATCATCCGTCTAGGACGG
CTTATGATCGAGCAAGCTCGCGTCAAATTCCTCACAGAGGCAAACGAACC
GCGCACGGAAACGGAACTTCGATCCTTCCTGGGACTCGTCAACGTCTACC
GACGGTTCATCCCGCGCTTTTCGTACATGGCCGCACCGCTTAACGCGGTA
CTGCGGAAAGGCCAGCCACCTAAACTGGAACCCTTCAATGCCGTACAAAC
GGAAGCGTTTCAATCACTGATCCAGGCTGTCACGACGGCCCCGATTCTCT
CGTTGCCCAAATCGGGATTACCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_64:1492167..1492742-

>Gvermi7660.t1 ID=Gvermi7660.t1|Name=Gvermi7660.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=576bp|location=Sequence derived from alignment at ScGOVlb_64:1492167..1492742- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTTCGTCTGTCACTCTGGGTCGTACTGCTTTAAGCGGATGCCATT
TGGTCTAACCAACGCACCGGATACCTTTCAAAGGGCGATCGACATACTGT
TGAACCGCTTCAAGTGGCGCACGTGCTTGGTCTACCTGGATGATATCATC
TTCTTTTCCAGCAATCTGGATGACCACTTGACTCACGTCAAGGAGGTGAT
GACCGTACTCCGCAACGCGGGAATCAGCCTCAAGCTGAGGAAATGTGAGT
TCTTCACAGATACAATCAAACATCTGGGCCACATCATCCGTCTAGGACGG
CTTATGATCGAGCAAGCTCGCGTCAAATTCCTCACAGAGGCAAACGAACC
GCGCACGGAAACGGAACTTCGATCCTTCCTGGGACTCGTCAACGTCTACC
GACGGTTCATCCCGCGCTTTTCGTACATGGCCGCACCGCTTAACGCGGTA
CTGCGGAAAGGCCAGCCACCTAAACTGGAACCCTTCAATGCCGTACAAAC
GGAAGCGTTTCAATCACTGATCCAGGCTGTCACGACGGCCCCGATTCTCT
CGTTGCCCAAATCGGGATTACCGTAA
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