Gvermi7618.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7618.t1
Unique NameGvermi7618.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length411
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:577790..583158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7618Gvermi7618Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 577790..583158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7618.t1Gvermi7618.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 577790..583158 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7618.t1.start1Gvermi7618.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 577790..577792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7618.t1.CDS1Gvermi7618.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 577790..578022 +
Gvermi7618.t1.CDS2Gvermi7618.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 581955..582352 +
Gvermi7618.t1.CDS3Gvermi7618.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 582557..583158 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7618.t1.exon1Gvermi7618.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 577790..578022 +
Gvermi7618.t1.exon2Gvermi7618.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 581955..582352 +
Gvermi7618.t1.exon3Gvermi7618.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 582557..583158 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7618.t1.intron1Gvermi7618.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 578023..581954 +
Gvermi7618.t1.intron2Gvermi7618.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 582353..582556 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7618.t1.stop1Gvermi7618.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 583156..583158 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7618.t1 ID=Gvermi7618.t1|Name=Gvermi7618.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=411bp
MSLLLVIDNTALSQVRVEWASNEDEHDPMDRSPGRRTPHAGDNIYYDPWT
WEKITPQEAVILRDAMRVILRVIRLISSFIHSLLLSFYKSLDTLVMLVLF
SIFLGLLIVIAHSQRLQIFKASVPGPMSGWEIGPELSTEVTFCPEDLPSP
FTIVCIPPNDQETSFAVFMINGIKVRTEKQLPYVLTGDTYANGANAWIPE
SQVNQIECRLTPTTAASTEQPPNSQEGLNASEPPQNYCIYIPAKSYESKT
GAWEDAEQDEAVWYKRDDNTRKTDRAGLATMRFSFTPAYTARYALTLDMQ
TSHRTEHNDVWVELSGVPFKLVSKAGTTELGRRGLNKAYHNKNGRARVVF
TTDFDPHVFSTESFLQAGDTYVVKIGGRSTKVAIYGIILFPCASYGCAPT
QDWYRSANTC*
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spliced messenger RNA

>Gvermi7618.t1 ID=Gvermi7618.t1|Name=Gvermi7618.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1233bp|location=Sequence derived from alignment at ScGOVlb_64:577790..583158+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTTTTGCTAGTCATCGATAACACTGCCTTGAGTCAAGTACGAGT
TGAATGGGCGAGTAACGAGGATGAACATGACCCAATGGACCGGTCACCGG
GCAGAAGAACTCCGCATGCGGGTGACAATATCTATTACGATCCGTGGACG
TGGGAAAAGATCACTCCACAGGAGGCTGTTATCCTTCGGGACGCCATGAG
AGTAATTCTCCGCGTCATCCGGTTGATTTCATCGTTCATCCATTCGCTGC
TGCTGTCTTTCTACAAATCTTTGGATACTCTTGTCATGTTGGTTTTGTTC
TCCATCTTCCTTGGTCTTCTTATCGTCATCGCACACAGTCAAAGGCTGCA
AATCTTTAAAGCTTCTGTGCCGGGACCAATGTCTGGATGGGAAATAGGAC
CCGAACTTTCTACAGAAGTTACATTCTGTCCTGAAGATCTACCTTCTCCG
TTCACAATTGTGTGCATTCCGCCTAATGACCAAGAAACTTCTTTCGCTGT
GTTTATGATAAATGGCATCAAGGTCCGCACAGAAAAGCAATTACCGTACG
TTTTGACTGGTGATACCTACGCTAATGGTGCCAATGCATGGATTCCTGAG
TCGCAAGTGAACCAGATAGAGTGTCGCCTTActcccacgacTGCAGCGTC
TACCGAACAACCGCCGAATTCGCAAGAGGGGCTGAACGCCTCTGAACCAC
CTCAGAACTACTGCATCTATATTCCTGCAAAATCATACGAGTCTAAGACA
GGTGCCTGGGAGGATGCGGAACAGGATGAAGCCGTATGGTACAAGAGGGA
TGACAACACCCGTAAGACGGATCGTGCAGGGTTGGCAACTATGCGCTTTT
CATTTACACCTGCCTATACGGCTCGATATGCACTCACGCTTGACATGCAA
ACCAGCCATAGGACCGAGCATAATGATGTGTGGGTCGAGCTCTCTGGTGT
GCCATTTAAGCTTGTTAGCAAGGCAGGAACTACCGAGTTGGGAAGACGCG
GTTTAAACAAGGCATACCACAACAAAAATGGACGGGCGCGAGTCGTATTC
ACTACTGATTTTGACCCGCACGTATTCTCAACAGAGTCTTTCTTGCAAGC
AGGTGATACGTATGTTGTGAAAATTGGCGGCAGAAGTACAAAGGTTGCTA
TATATGGTATTATTCTCTTTCCTTGCGCTTCCTATGGCTGTGCCCCCACT
CAAGACTGGTACAGGTCAGCCAACACGTGTTAA
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protein sequence of Gvermi7618.t1

>Gvermi7618.t1 ID=Gvermi7618.t1|Name=Gvermi7618.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=411bp
MSLLLVIDNTALSQVRVEWASNEDEHDPMDRSPGRRTPHAGDNIYYDPWT
WEKITPQEAVILRDAMRVILRVIRLISSFIHSLLLSFYKSLDTLVMLVLF
SIFLGLLIVIAHSQRLQIFKASVPGPMSGWEIGPELSTEVTFCPEDLPSP
FTIVCIPPNDQETSFAVFMINGIKVRTEKQLPYVLTGDTYANGANAWIPE
SQVNQIECRLTPTTAASTEQPPNSQEGLNASEPPQNYCIYIPAKSYESKT
GAWEDAEQDEAVWYKRDDNTRKTDRAGLATMRFSFTPAYTARYALTLDMQ
TSHRTEHNDVWVELSGVPFKLVSKAGTTELGRRGLNKAYHNKNGRARVVF
TTDFDPHVFSTESFLQAGDTYVVKIGGRSTKVAIYGIILFPCASYGCAPT
QDWYRSANTC*
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mRNA from alignment at ScGOVlb_64:577790..583158+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7618.t1 ID=Gvermi7618.t1|Name=Gvermi7618.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=5369bp|location=Sequence derived from alignment at ScGOVlb_64:577790..583158+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCTTTTGCTAGTCATCGATAACACTGCCTTGAGTCAAGTACGAGT
TGAATGGGCGAGTAACGAGGATGAACATGACCCAATGGACCGGTCACCGG
GCAGAAGAACTCCGCATGCGGGTGACAATATCTATTACGATCCGTGGACG
TGGGAAAAGATCACTCCACAGGAGGCTGTTATCCTTCGGGACGCCATGAG
AGTAATTCTCCGCGTCATCCGGTTGATTTCATCGTCACCAACGAATTTTT
CCATGCCTTGGAGGAGCAGGATGCAATGTTGGACGATGTTCCCGATGTAG
ATGGTGAACATGTGCCCGTGGCGGTAATTAATGCGCTAGTACAGGACGTG
TCTGCGGTCGTCTGATTCACGGTGATTGTGGACGGCATAGACGGCGAGTG
CGTCACTTGGCGTGGTTGATGCGAGGTCTGAGACGGAACGTCTGAACTCT
TACGAGTTTACGGCGTAGCCGTCCCCCGCTAGGGTGGCGACAATTCCCCA
GAGGTGGAAGATCGCACCGCATGTATGTGGGTGAGCTCACGTCCGGATTG
GAACAGTTTAGACCGGGGAGGCAGATCGGTTAGAAAGAAGTTATTTGATG
GCACGCGCGACGTGTCTCCCCGTCTGGCGACGACGGCGCGTGGTTGCGAA
ACATTTCCACGGAGTGGTGCACGAGCTATGTCACACGGCGGGGCCTGCAA
CGGTACTTCTGCTATTGCAATGCTGTTCACCCCAGCTACGGGTGTTGTAG
CTGTGCCATCCACTTCATGGTTTACAGAGCCGTCCTGACGGGTTTTTGAG
CGGCTTTCCACGACTTGTGGTGACCCCTGCTGCTCTCGCCCCATCCTTGG
GCGGTTGTAATCCACTTCAAAGTGTGCCATGTTATGTTTTGAAGGGCTTA
TAAGTTCACCGGGACCAGCAGTGAGTGCTTTTCAGTTCCCGCACCTGCGG
GGAATAGGACTTACGTCCACGACGGCAGATGATGACGACGGAGTATGTGG
GCCAGTATTGCCAATACTAACCACGTCTCCTGTATCTTCTTTCCCTTGCG
TGCAAGAGTCGATCAGGCTCTTCGACAGTGTCGAGGGTGTTTCGCGAGAG
CTATAAGTGGACCTTGTCAACTGTGTCGCCTGTACAGAAGGGTCCGGGGA
TGAGTTCTCGACGGTATGGTGTTTACCAGCATGCTGATGCGGAATCCTTT
CCAAAGGCGGCGGGATATCCTTCTTGACAAGGCTATTGTCCCCTGCAATT
GGGGTGAAGTAGTAGGCTTCGCGTTTTCAAAACGCGATTGCGGCCTTGCA
GTCGCGCCATCCGGGGTATCCGTAACTACACCGTCCTGGACGGAGCCTGA
TGGCAATTCCATATCAATAATCCACGAGTCGCGAGCATTAACCAACTGTC
ACGACACCGATAATGGGTTTTCGCCAATGCAATCGATCCCGGCCCCTGCC
TCAGGCGAAGCCGCGTTCGCAGGCACCGCCGATCTTTTTATCTTGCCGGT
AGTCGAGTTGTCAGACATTCATTCTCTGTATTTATTATTCCTATTCTGTA
AATATACTTTGTTACATTTAACAATTGTCGGATCGTTTTGAAACTAATGC
ATTTTCCTTCTCAAAGCGTAATCTCCCTATTTTAACATTGTTTAGTTGGC
CAGGTTTGGCCATCTAAACTTCATCATCACCAATATTTTTAAAATGGGTC
TCTGAACGCCTTCGGCGCTCATTTCTGCATCTTTCTTAAACCAGTTTGCC
TTTATTCATTTATAACCCCATCAATAAATAAACAATTGATAATGTCAGTA
TAATTTCCATCATCTTCTGCTCCTAACCAGTGTCAAATTAAATATGAATT
TGTGAAAGATAGTCGAAACACAAATATCTTATCATGAATATTTTTGCTTT
ATGTATATTTGGAACGAGTTACTTCAAACGATTTAGTCAGTCATTCAAAA
ACCTTTTTCAATATGACGTGGTTTGAAAAAATCTTCTTCTTACTAAACTT
TTTCGTTAAAATTAATAAAATCTAATCATGTTTTTTTGTCGCATGTATTG
TCCCTAAATGCTCTGCAGCACCTTGATATTCTTTATCCATTAAAATATCC
CAGTGTTCTCTTTATTTGACGATAAATTCTCAAGCATCCAAACTAAAATT
CAACCCTCATCTGGACATTTCCATGCAGCGGTTTTATGATATTCTATATT
TTGAAGAAAAATGCCAATGTCCATTCGAGCCTCCAAAGCATATGCAGACG
TTATGATAGATAATCAATTTGATAAACCCGAAACGTCTGTCATGAAGTAC
ATTTTTCTTTCAGCATTATGCCCTCCAGGACGACATTATTGAAAGAAAAT
TAGATCTGTTGCATAAAGACAGTACGGATAATTTATTTAAAGTCCAGCTC
TTTCTTGAATTCAACGTAGCTTGAATGCTATAGCAGATATAAATTTTATG
ATTACTCTTTCCATGCTTTCTGCTTCCGTTTTCAACATCGGACGTAGAAA
CTCCCGGGTTACACGACGTTTTATTGTTGTTAATCTCATAAAAAACCCAG
ATTCCTCCATGTCCTCTTCTTAAATCCATATTTGGATACCGTTGGCTGTA
TAATTCTTCATAAAAAATCGAACTCTTTTTGTAAAACATTTGGCATAGAT
GATATTGTCTCGGAACCGTTTTGATATTAAACAACGTAATATAAAGGGCT
TTTGGAGCCCCAATCTTCATAAAAGCTTTCAAAGATATTCTATATATATT
TTTGCTGCGATTCGTTTAGTTTTAAAACACATTTTATCTTCAAAAACGAC
TAAACCGTTTGCAGTGTGTTTTTAAGAGATAAACCACATATTTTAGAAGC
TACGAGAATTTTATATTCAGaacaagaagaacgaaaaacaagttttcgca
tatctattaaatattttcgtagctacctgttgttctgatagtgaactgtg
cgtgtgtttatctacatcgttatttcattgttatgtaataagtttgccag
taattagatttatttacgaaattaaaatcctaagttctttattgctgtat
ttctctaaatatagtacaacatgacagtatcgtaaatgattttgtttaac
ggcaAAGCGTTGGATTCCTGCCTTCTATTTTGTGTTGAGATCGAGTAATG
GGATTAAAAACTAAAAAATAACAACATACAATTTAAATTCTTAAAAACCT
GGAACATTTAAGGTCAAGACATACGAAATATGATAACTTCGAAAATCGGT
TTCAAGAATTCAATAGCCTTCTATATCCTTATCAATATCCTGATCATCCG
TTAGCGCCTCGAACGCGCCTGTGAAAGTTTTGTCAGAGAAAGCACTCCTC
AATGAGTGCCAGAGCGCCTCGATCATGCCCGGAACCCAGCTTTTCTGCGC
CTCGCTCACGACCTACCGTCACCCTCACATTAGGCCTCAGACGTACAGGC
CTCATACGTGCAGAGCGCGCTAGGTCCCGCCAGCCCCCTCTCACCGTCGC
TTGCTCTTCTCTgccgcctccgcctccgccgccgccggaacgcgccgttc
cgcttttcaccggcaacgcgcacgccgcccgtcgccacgccgccccgccg
cctcgccgccCTCTCGCTCTTCTGCGCCTCGTGCTCTTTCACACATACCG
CCGCTCCTGTCCCGCCGCCACTCGACCACGAAACCCATCGGATATTTGCT
GTCCGCATGCCTATCGACCACTACAAATGAGTACGCGAATGACTGTGCAC
GTGGCCACGCGTGTATTTCGTGTCAGAATAACATACTCCAAAGTATCATG
ATGACAAGAGGGCATTTAGCTTTCTAGATGTTTCACGCTTTCGTGCGCTT
TTCTAACTTCAATCGTCCCGATTCGTATCGATTCACTGCTTGTTCTCCAT
TCAATCCCACGTGTCTTGAGTCAATGCCATTCAAAGCTTTGCTTGAATCG
ATGCCATTCAAAGCCTTGCTTGAACCGATGCCATTCAAAGCCTTGCTTGG
ACCGATGCCATTCATGGCCTTTATTACATCAATGCCATTCAAGGGCTTTC
CTGGGCACCCCATCGTCATGGACACGCCTTCCAGTCTCCATAAAAGGCGT
TCGAAACGAGTTCCTAATTGTTCCTAGCTCGCCTCACGGCTTTGCTATCA
CCAACACTGCCTCAGGTTCATCCATTCGCTGCTGCTGTCTTTCTACAAAT
CTTTGGATACTCTTGTCATGTTGGTTTTGTTCTCCATCTTCCTTGGTCTT
CTTATCGTCATCGCACACAGTCAAAGGCTGCAAATCTTTAAAGCTTCTGT
GCCGGGACCAATGTCTGGATGGGAAATAGGACCCGAACTTTCTACAGAAG
TTACATTCTGTCCTGAAGATCTACCTTCTCCGTTCACAATTGTGTGCATT
CCGCCTAATGACCAAGAAACTTCTTTCGCTGTGTTTATGATAAATGGCAT
CAAGGTCCGCACAGAAAAGCAATTACCGTACGTTTTGACTGGTGATACCT
ACGCTAATGGTGCCAATGCATGGATTCCTGAGTCGCAAGTGAACCAGATA
GAGTGTCGCCTTAGTACTGGAGATACCGCATTTTCTACAGTTACATTCTC
ATGTGATGATGAGACTGAAGAAATCCCTGTtactactttgcctcctacga
cgacttttacgaccactacaatgacaacaacaacacctactactactacc
accactaccaccaccactaccaccaccactaccgaactccaaacgaccac
tgaaattaccacgacagctcccacgacTGCAGCGTCTACCGAACAACCGC
CGAATTCGCAAGAGGGGCTGAACGCCTCTGAACCACCTCAGAACTACTGC
ATCTATATTCCTGCAAAATCATACGAGTCTAAGACAGGTGCCTGGGAGGA
TGCGGAACAGGATGAAGCCGTATGGTACAAGAGGGATGACAACACCCGTA
AGACGGATCGTGCAGGGTTGGCAACTATGCGCTTTTCATTTACACCTGCC
TATACGGCTCGATATGCACTCACGCTTGACATGCAAACCAGCCATAGGAC
CGAGCATAATGATGTGTGGGTCGAGCTCTCTGGTGTGCCATTTAAGCTTG
TTAGCAAGGCAGGAACTACCGAGTTGGGAAGACGCGGTTTAAACAAGGCA
TACCACAACAAAAATGGACGGGCGCGAGTCGTATTCACTACTGATTTTGA
CCCGCACGTATTCTCAACAGAGTCTTTCTTGCAAGCAGGTGATACGTATG
TTGTGAAAATTGGCGGCAGAAGTACAAAGGTTGCTATATATGGTATTATT
CTCTTTCCTTGCGCTTCCTATGGCTGTGCCCCCACTCAAGACTGGTACAG
GTCAGCCAACACGTGTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_64:577790..583158+

>Gvermi7618.t1 ID=Gvermi7618.t1|Name=Gvermi7618.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1233bp|location=Sequence derived from alignment at ScGOVlb_64:577790..583158+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCTTTTGCTAGTCATCGATAACACTGCCTTGAGTCAAGTACGAGT
TGAATGGGCGAGTAACGAGGATGAACATGACCCAATGGACCGGTCACCGG
GCAGAAGAACTCCGCATGCGGGTGACAATATCTATTACGATCCGTGGACG
TGGGAAAAGATCACTCCACAGGAGGCTGTTATCCTTCGGGACGCCATGAG
AGTAATTCTCCGCGTCATCCGGTTGATTTCATCGTTCATCCATTCGCTGC
TGCTGTCTTTCTACAAATCTTTGGATACTCTTGTCATGTTGGTTTTGTTC
TCCATCTTCCTTGGTCTTCTTATCGTCATCGCACACAGTCAAAGGCTGCA
AATCTTTAAAGCTTCTGTGCCGGGACCAATGTCTGGATGGGAAATAGGAC
CCGAACTTTCTACAGAAGTTACATTCTGTCCTGAAGATCTACCTTCTCCG
TTCACAATTGTGTGCATTCCGCCTAATGACCAAGAAACTTCTTTCGCTGT
GTTTATGATAAATGGCATCAAGGTCCGCACAGAAAAGCAATTACCGTACG
TTTTGACTGGTGATACCTACGCTAATGGTGCCAATGCATGGATTCCTGAG
TCGCAAGTGAACCAGATAGAGTGTCGCCTTActcccacgacTGCAGCGTC
TACCGAACAACCGCCGAATTCGCAAGAGGGGCTGAACGCCTCTGAACCAC
CTCAGAACTACTGCATCTATATTCCTGCAAAATCATACGAGTCTAAGACA
GGTGCCTGGGAGGATGCGGAACAGGATGAAGCCGTATGGTACAAGAGGGA
TGACAACACCCGTAAGACGGATCGTGCAGGGTTGGCAACTATGCGCTTTT
CATTTACACCTGCCTATACGGCTCGATATGCACTCACGCTTGACATGCAA
ACCAGCCATAGGACCGAGCATAATGATGTGTGGGTCGAGCTCTCTGGTGT
GCCATTTAAGCTTGTTAGCAAGGCAGGAACTACCGAGTTGGGAAGACGCG
GTTTAAACAAGGCATACCACAACAAAAATGGACGGGCGCGAGTCGTATTC
ACTACTGATTTTGACCCGCACGTATTCTCAACAGAGTCTTTCTTGCAAGC
AGGTGATACGTATGTTGTGAAAATTGGCGGCAGAAGTACAAAGGTTGCTA
TATATGGTATTATTCTCTTTCCTTGCGCTTCCTATGGCTGTGCCCCCACT
CAAGACTGGTACAGGTCAGCCAACACGTGTTAA
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