Gvermi7662.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7662.t1
Unique NameGvermi7662.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1494311..1495507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7662Gvermi7662Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1494311..1495507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7662.t1Gvermi7662.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1494311..1495507 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7662.t1.stop1Gvermi7662.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1494311..1494313 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7662.t1.CDS1Gvermi7662.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1494311..1494575 -
Gvermi7662.t1.CDS2Gvermi7662.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1494780..1495507 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7662.t1.exon1Gvermi7662.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1494311..1494575 -
Gvermi7662.t1.exon2Gvermi7662.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1494780..1495507 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7662.t1.intron1Gvermi7662.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1494576..1494779 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7662.t1.start1Gvermi7662.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1495505..1495507 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7662.t1 ID=Gvermi7662.t1|Name=Gvermi7662.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=331bp
MQLSLCNHHFSGEDPIFVLDFLARFVAEADVLWMNEGQAFVALPYFLRGI
AEDQYNSVRGSWRASEGGVTCWPEAVQNLLHSYATHTAIQNAILALRDAR
QRPEEGETAYSVRLNKAFHRCGNVYPTGERCTMFIDGLIPAIRTLVARRR
EDKPKSTHLVLVQYAQAEGDVLRARGPKEREKSAKTLLVNTGSSIASALS
GVEPQLGYDNVQLEQDGALSVFTTDLPSTAKTSFETAQTGSALKVVVNYE
ALTPEENGTVPIASYLRAKSDFSHVVPSTTAAPLRQYPAGPVRSANAATD
PSPPHGEITAQAMVAEQIESPPQAEQTQEN*
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spliced messenger RNA

>Gvermi7662.t1 ID=Gvermi7662.t1|Name=Gvermi7662.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=993bp|location=Sequence derived from alignment at ScGOVlb_64:1494311..1495507- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTTGTCGCTATGCAACCACCACTTCAGTGGAGAAGACCCAATATT
CGTTCTCGACTTCCTCGCGCGGTTCGTCGCGGAAGCCGATGTACTCTGGA
TGAATGAAGGCCAAGCCTTCGTTGCGTTGCCCTATTTCTTAAGGGGAATT
GCGGAGGACCAGTACAACTCAGTACGTGGTTCTTGGCGTGCCTCCGAAGG
AGGAGTGACGTGCTGGCCGGAGGCAGTGCAGAACTTGTTGCACTCGTACG
CAACACACACCGCCATCCAGAACGCCATCCTCGCCCTGAGGGATGCCCGC
CAGCGCCCTGAAGAGGGAGAGACCGCATACTCGGTACGGCTCAACAAAGC
CTTCCACCGCTGTGGGAATGTCTACCCTACTGGGGAACGCTGTACGATGT
TCATCGATGGACTCATCCCAGCTATCCGGACTCTCGTGGCCCGTCGCCGG
GAAGACAAACCGAAGTCGACGCACCTCGTTTTGGTGCAGTACGCACAAGC
AGAGGGGGATGTGCTCCGCGCACGAGGTCCCAAAGAACGGGAAAAGTCCG
CCAAAACGTTGTTAGTGAACACCGGTTCATCTATCGCATCCGCGTTGTCG
GGAGTGGAGCCCCAGTTGGGGTACGATAACGTTCAGCTCGAGCAAGACGG
CGCACTATCTGTCTTTACTACGGACCTGCCATCTACCGCGAAGACCTCGT
TTGAAACGGCCCAAACTGGGTCCGCCCTGAAGGTGGTGGTGAACTATGAG
GCCCTCACCCCGGAAGAGAACGGAACGGTACCCATCGCGTCGTACCTCCG
AGCCAAGTCGGACTTCTCGCATGTCGTCCCGTCAACGACGGCAGCGCCAT
TGAGGCAGTACCCGGCAGGTCCGGTTCGCTCCGCCAACGCCGCTACCGAT
CCTAGTCCCCCTCATGGGGAAATCACTGCTCAAGCAATGGTTGCCGAGCA
GATTGAATCCCCGCCTCAGGCGGAGCAGACCCAAGAAAATTAA
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protein sequence of Gvermi7662.t1

>Gvermi7662.t1 ID=Gvermi7662.t1|Name=Gvermi7662.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=331bp
MQLSLCNHHFSGEDPIFVLDFLARFVAEADVLWMNEGQAFVALPYFLRGI
AEDQYNSVRGSWRASEGGVTCWPEAVQNLLHSYATHTAIQNAILALRDAR
QRPEEGETAYSVRLNKAFHRCGNVYPTGERCTMFIDGLIPAIRTLVARRR
EDKPKSTHLVLVQYAQAEGDVLRARGPKEREKSAKTLLVNTGSSIASALS
GVEPQLGYDNVQLEQDGALSVFTTDLPSTAKTSFETAQTGSALKVVVNYE
ALTPEENGTVPIASYLRAKSDFSHVVPSTTAAPLRQYPAGPVRSANAATD
PSPPHGEITAQAMVAEQIESPPQAEQTQEN*
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mRNA from alignment at ScGOVlb_64:1494311..1495507-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7662.t1 ID=Gvermi7662.t1|Name=Gvermi7662.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at ScGOVlb_64:1494311..1495507- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGTTGTCGCTATGCAACCACCACTTCAGTGGAGAAGACCCAATATT
CGTTCTCGACTTCCTCGCGCGGTTCGTCGCGGAAGCCGATGTACTCTGGA
TGAATGAAGGCCAAGCCTTCGTTGCGTTGCCCTATTTCTTAAGGGGAATT
GCGGAGGACCAGTACAACTCAGTACGTGGTTCTTGGCGTGCCTCCGAAGG
AGGAGTGACGTGCTGGCCGGAGGCAGTGCAGAACTTGTTGCACTCGTACG
CAACACACACCGCCATCCAGAACGCCATCCTCGCCCTGAGGGATGCCCGC
CAGCGCCCTGAAGAGGGAGAGACCGCATACTCGGTACGGCTCAACAAAGC
CTTCCACCGCTGTGGGAATGTCTACCCTACTGGGGAACGCTGTACGATGT
TCATCGATGGACTCATCCCAGCTATCCGGACTCTCGTGGCCCGTCGCCGG
GAAGACAAACCGAAGTCGACGCACCTCGTTTTGGTGCAGTACGCACAAGC
AGAGGGGGATGTGCTCCGCGCACGAGGTCCCAAAGAACGGGAAAAGTCCG
CCAAAACGTTGTTAGTGAACACCGGTTCATCTATCGCATCCGCGTTGTCG
GGAGTGGAGCCCCAGTTGGGGTACGATAACGTTCAGCTCGAGCAAGACGG
CGCACTATCTGTCTTTACTACGGACCTGCCATCTACCGCGAAGACCTCGT
TTGAAACGGCCCAAACTGGGTCCGCCCTGTACGTTGACGCACCGCGCGTA
CCGTATTCAAACGTGATATTCCGCTTTTAGCGGCCTGGATGGAAGGACTC
TCGTCCCGCAGTACGCCTCCCCGATAACGGGCAAATTCACCGTCAACAGA
GGAGATCGGCGCTCATCTGTCATTTGTGCTATATGCATGGCCACACCTCT
CCACAATGTCTCTTCTCACTGAAAGACATGAGGAAGGTGGTGGTGAACTA
TGAGGCCCTCACCCCGGAAGAGAACGGAACGGTACCCATCGCGTCGTACC
TCCGAGCCAAGTCGGACTTCTCGCATGTCGTCCCGTCAACGACGGCAGCG
CCATTGAGGCAGTACCCGGCAGGTCCGGTTCGCTCCGCCAACGCCGCTAC
CGATCCTAGTCCCCCTCATGGGGAAATCACTGCTCAAGCAATGGTTGCCG
AGCAGATTGAATCCCCGCCTCAGGCGGAGCAGACCCAAGAAAATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_64:1494311..1495507-

>Gvermi7662.t1 ID=Gvermi7662.t1|Name=Gvermi7662.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=993bp|location=Sequence derived from alignment at ScGOVlb_64:1494311..1495507- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGTTGTCGCTATGCAACCACCACTTCAGTGGAGAAGACCCAATATT
CGTTCTCGACTTCCTCGCGCGGTTCGTCGCGGAAGCCGATGTACTCTGGA
TGAATGAAGGCCAAGCCTTCGTTGCGTTGCCCTATTTCTTAAGGGGAATT
GCGGAGGACCAGTACAACTCAGTACGTGGTTCTTGGCGTGCCTCCGAAGG
AGGAGTGACGTGCTGGCCGGAGGCAGTGCAGAACTTGTTGCACTCGTACG
CAACACACACCGCCATCCAGAACGCCATCCTCGCCCTGAGGGATGCCCGC
CAGCGCCCTGAAGAGGGAGAGACCGCATACTCGGTACGGCTCAACAAAGC
CTTCCACCGCTGTGGGAATGTCTACCCTACTGGGGAACGCTGTACGATGT
TCATCGATGGACTCATCCCAGCTATCCGGACTCTCGTGGCCCGTCGCCGG
GAAGACAAACCGAAGTCGACGCACCTCGTTTTGGTGCAGTACGCACAAGC
AGAGGGGGATGTGCTCCGCGCACGAGGTCCCAAAGAACGGGAAAAGTCCG
CCAAAACGTTGTTAGTGAACACCGGTTCATCTATCGCATCCGCGTTGTCG
GGAGTGGAGCCCCAGTTGGGGTACGATAACGTTCAGCTCGAGCAAGACGG
CGCACTATCTGTCTTTACTACGGACCTGCCATCTACCGCGAAGACCTCGT
TTGAAACGGCCCAAACTGGGTCCGCCCTGAAGGTGGTGGTGAACTATGAG
GCCCTCACCCCGGAAGAGAACGGAACGGTACCCATCGCGTCGTACCTCCG
AGCCAAGTCGGACTTCTCGCATGTCGTCCCGTCAACGACGGCAGCGCCAT
TGAGGCAGTACCCGGCAGGTCCGGTTCGCTCCGCCAACGCCGCTACCGAT
CCTAGTCCCCCTCATGGGGAAATCACTGCTCAAGCAATGGTTGCCGAGCA
GATTGAATCCCCGCCTCAGGCGGAGCAGACCCAAGAAAATTAA
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