Gvermi7688.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7688.t1
Unique NameGvermi7688.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length508
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:2448741..2450264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog493475.GARC_4162
PFAMsCotH,LTD
Max annot lvl1236|Gammaproteobacteria
Evalue5.53e-13
EggNOG OGsCOG5337@1|root,COG5337@2|Bacteria,1QCJ4@1224|Proteobacteria,1S91X@1236|Gammaproteobacteria
DescriptionCotH kinase protein
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7688Gvermi7688Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 2448741..2450264 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7688.t1.stop1Gvermi7688.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 2448741..2448743 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7688.t1.CDS1Gvermi7688.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2448741..2450264 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7688.t1.exon1Gvermi7688.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2448741..2450264 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7688.t1.start1Gvermi7688.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 2450262..2450264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7688.t1Gvermi7688.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 2448741..2450264 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7688.t1 ID=Gvermi7688.t1|Name=Gvermi7688.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=508bp
MVSATETQSPSDPIFLQKPDQPDMTGAAIFETSSRNIFNRDHHKIHIRIH
QLVFDKVLSDGAADIDSGYGLVDEFCIDGTTINNVGIKVRGNTSAANIKR
QFKFKFDAEDVFAWRDGRMQQLAFPENDDRRFFGEQGFSVRASQNDPSRI
REMLAGKIFREATLGEEDPQRPWRTRGALVYRTAFATLYVTNGRTVEEGY
DAGHPEYRVPFKGKLYDPKGLYLITENIDKTFLKTRFERYDNEKVKGYLF
QADKGTAYFQEDKYSRVGWKCELVKGKKPKDEDDLLKADEKMLDLIKFLD
TMPCEADIRSRFDMDSLNGYLAGALLATHWDSLAANRNNDFMFYLKRDVL
DDNMQQVLDDEGEPVDEKKWYMITWDLDNTLWDCPGGSEVQDPYRAWFSN
YLYDPARKESRKTRLLENIFDRSENEQIRSEYRGVLRDLLNGFYSQSKYE
SEVNSLMKRTGDAIEDTRREVAAAGWQNGWGERNNPHDFEQIKNHARVRR
SKVGGQL*
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spliced messenger RNA

>Gvermi7688.t1 ID=Gvermi7688.t1|Name=Gvermi7688.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at ScGOVlb_64:2448741..2450264- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCCGCCACCGAAACACAGTCCCCCTCGGACCCCATCTTTTTGCA
GAAGCCCGACCAGCCGGACATGACTGGCGCCGCCATCTTCGAGACCTCCT
CGCGCAACATCTTCAACCGCGATCACCACAAAATCCACATCCGCATCCAC
CAGCTGGTCTTCGACAAGGTGCTCTCGGACGGCGCCGCCGATATTGACTC
GGGCTACGGGCTCGTGGACGAGTTCTGCATCGACGGCACTACCATCAACA
ACGTCGGCATCAAAGTGCGCGGCAACACCTCCGCCGCCAACATCAAACGT
CAGTTCAAGTTCAAGTTTGACGCCGAGGATGTCTTTGCGTGGCGCGACGG
TCGCATGCAACAGCTGGCCTTTCCCGAAAACGACGACCGCCGCTTCTTCG
GCGAGCAGGGCTTCTCAGTGCGCGCCAGCCAGAATGACCCGTCGCGCATC
CGCGAGATGCTCGCCGGCAAGATCTTTCGAGAGGCCACGTTGGGCGAAGA
GGATCCGCAACGCCCGTGGCGGACACGCGGCGCCCTCGTTTATCGCACCG
CCTTCGCTACATTGTACGTCACCAATGGCCGCACCGTGGAAGAGGGCTAT
GACGCTGGACATCCTGAGTACCGCGTCCCGTTCAAGGGCAAGCTTTACGA
TCCAAAGGGACTCTATCTCATTACAGAGAACATCGACAAAACGTTCCTTA
AGACCCGCTTTGAACGTTACGACAATGAAAAGGTGAAAGGATACTTGTTT
CAGGCCGACAAGGGCACGGCATATTTTCAGGAAGACAAGTACTCACGGGT
TGGGTGGAAGTGTGAGCTGGTGAAGGGAAAGAAGCCAAAAGATGAAGATG
ATTTGCTGAAGGCCGACGAGAAAATGCTTGACCTTATAAAATTCCTAGAC
ACAATGCCCTGCGAAGCTGACATCAGATCCCGATTTGACATGGACAGCCT
GAACGGCTACCTGGCCGGTGCTCTACTGGCGACGCACTGGGACAGCTTGG
CAGCTAATCGCAACAACGACTTCATGTTCTACTTAAAGCGAGACGTGCTG
GACGACAACATGCAGCAAGTTCTTGACGATGAAGGCGAGCCCGTCGACGA
AAAAAAGTGGTATATGATCACATGGGATCTAGACAACACTCTGTGGGACT
GCCCTGGTGGATCGGAAGTGCAAGACCCGTACCGTGCATGGTTTTCAAAC
TATCTGTACGATCCTGCCCGTAAGGAGTCCAGAAAGACACGGTTGCTGGA
AAATATATTTGACAGAAGTGAAAACGAACAGATTCGCAGCGAGTACCGCG
GAGTACTCCGTGACCTTCTGAACGGGTTTTACAGCCAGAGCAAGTATGAG
AGTGAGGTGAACAGCTTGATGAAGCGGACCGGCGACGCAATCGAAGATAC
GCGACGGGAAGTGGCTGCTGCCGGCTGGCAAAATGGGTGGGGGGAGCGAA
ACAATCCGCATGATTTCGAACAAATCAAGAATCATGCGCGCGTGCGCAGA
AGCAAGGTCGGTGGGCAGCTTTAG
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protein sequence of Gvermi7688.t1

>Gvermi7688.t1 ID=Gvermi7688.t1|Name=Gvermi7688.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=508bp
MVSATETQSPSDPIFLQKPDQPDMTGAAIFETSSRNIFNRDHHKIHIRIH
QLVFDKVLSDGAADIDSGYGLVDEFCIDGTTINNVGIKVRGNTSAANIKR
QFKFKFDAEDVFAWRDGRMQQLAFPENDDRRFFGEQGFSVRASQNDPSRI
REMLAGKIFREATLGEEDPQRPWRTRGALVYRTAFATLYVTNGRTVEEGY
DAGHPEYRVPFKGKLYDPKGLYLITENIDKTFLKTRFERYDNEKVKGYLF
QADKGTAYFQEDKYSRVGWKCELVKGKKPKDEDDLLKADEKMLDLIKFLD
TMPCEADIRSRFDMDSLNGYLAGALLATHWDSLAANRNNDFMFYLKRDVL
DDNMQQVLDDEGEPVDEKKWYMITWDLDNTLWDCPGGSEVQDPYRAWFSN
YLYDPARKESRKTRLLENIFDRSENEQIRSEYRGVLRDLLNGFYSQSKYE
SEVNSLMKRTGDAIEDTRREVAAAGWQNGWGERNNPHDFEQIKNHARVRR
SKVGGQL*
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mRNA from alignment at ScGOVlb_64:2448741..2450264-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7688.t1 ID=Gvermi7688.t1|Name=Gvermi7688.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at ScGOVlb_64:2448741..2450264- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTTCCGCCACCGAAACACAGTCCCCCTCGGACCCCATCTTTTTGCA
GAAGCCCGACCAGCCGGACATGACTGGCGCCGCCATCTTCGAGACCTCCT
CGCGCAACATCTTCAACCGCGATCACCACAAAATCCACATCCGCATCCAC
CAGCTGGTCTTCGACAAGGTGCTCTCGGACGGCGCCGCCGATATTGACTC
GGGCTACGGGCTCGTGGACGAGTTCTGCATCGACGGCACTACCATCAACA
ACGTCGGCATCAAAGTGCGCGGCAACACCTCCGCCGCCAACATCAAACGT
CAGTTCAAGTTCAAGTTTGACGCCGAGGATGTCTTTGCGTGGCGCGACGG
TCGCATGCAACAGCTGGCCTTTCCCGAAAACGACGACCGCCGCTTCTTCG
GCGAGCAGGGCTTCTCAGTGCGCGCCAGCCAGAATGACCCGTCGCGCATC
CGCGAGATGCTCGCCGGCAAGATCTTTCGAGAGGCCACGTTGGGCGAAGA
GGATCCGCAACGCCCGTGGCGGACACGCGGCGCCCTCGTTTATCGCACCG
CCTTCGCTACATTGTACGTCACCAATGGCCGCACCGTGGAAGAGGGCTAT
GACGCTGGACATCCTGAGTACCGCGTCCCGTTCAAGGGCAAGCTTTACGA
TCCAAAGGGACTCTATCTCATTACAGAGAACATCGACAAAACGTTCCTTA
AGACCCGCTTTGAACGTTACGACAATGAAAAGGTGAAAGGATACTTGTTT
CAGGCCGACAAGGGCACGGCATATTTTCAGGAAGACAAGTACTCACGGGT
TGGGTGGAAGTGTGAGCTGGTGAAGGGAAAGAAGCCAAAAGATGAAGATG
ATTTGCTGAAGGCCGACGAGAAAATGCTTGACCTTATAAAATTCCTAGAC
ACAATGCCCTGCGAAGCTGACATCAGATCCCGATTTGACATGGACAGCCT
GAACGGCTACCTGGCCGGTGCTCTACTGGCGACGCACTGGGACAGCTTGG
CAGCTAATCGCAACAACGACTTCATGTTCTACTTAAAGCGAGACGTGCTG
GACGACAACATGCAGCAAGTTCTTGACGATGAAGGCGAGCCCGTCGACGA
AAAAAAGTGGTATATGATCACATGGGATCTAGACAACACTCTGTGGGACT
GCCCTGGTGGATCGGAAGTGCAAGACCCGTACCGTGCATGGTTTTCAAAC
TATCTGTACGATCCTGCCCGTAAGGAGTCCAGAAAGACACGGTTGCTGGA
AAATATATTTGACAGAAGTGAAAACGAACAGATTCGCAGCGAGTACCGCG
GAGTACTCCGTGACCTTCTGAACGGGTTTTACAGCCAGAGCAAGTATGAG
AGTGAGGTGAACAGCTTGATGAAGCGGACCGGCGACGCAATCGAAGATAC
GCGACGGGAAGTGGCTGCTGCCGGCTGGCAAAATGGGTGGGGGGAGCGAA
ACAATCCGCATGATTTCGAACAAATCAAGAATCATGCGCGCGTGCGCAGA
AGCAAGGTCGGTGGGCAGCTTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_64:2448741..2450264-

>Gvermi7688.t1 ID=Gvermi7688.t1|Name=Gvermi7688.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1524bp|location=Sequence derived from alignment at ScGOVlb_64:2448741..2450264- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTTCCGCCACCGAAACACAGTCCCCCTCGGACCCCATCTTTTTGCA
GAAGCCCGACCAGCCGGACATGACTGGCGCCGCCATCTTCGAGACCTCCT
CGCGCAACATCTTCAACCGCGATCACCACAAAATCCACATCCGCATCCAC
CAGCTGGTCTTCGACAAGGTGCTCTCGGACGGCGCCGCCGATATTGACTC
GGGCTACGGGCTCGTGGACGAGTTCTGCATCGACGGCACTACCATCAACA
ACGTCGGCATCAAAGTGCGCGGCAACACCTCCGCCGCCAACATCAAACGT
CAGTTCAAGTTCAAGTTTGACGCCGAGGATGTCTTTGCGTGGCGCGACGG
TCGCATGCAACAGCTGGCCTTTCCCGAAAACGACGACCGCCGCTTCTTCG
GCGAGCAGGGCTTCTCAGTGCGCGCCAGCCAGAATGACCCGTCGCGCATC
CGCGAGATGCTCGCCGGCAAGATCTTTCGAGAGGCCACGTTGGGCGAAGA
GGATCCGCAACGCCCGTGGCGGACACGCGGCGCCCTCGTTTATCGCACCG
CCTTCGCTACATTGTACGTCACCAATGGCCGCACCGTGGAAGAGGGCTAT
GACGCTGGACATCCTGAGTACCGCGTCCCGTTCAAGGGCAAGCTTTACGA
TCCAAAGGGACTCTATCTCATTACAGAGAACATCGACAAAACGTTCCTTA
AGACCCGCTTTGAACGTTACGACAATGAAAAGGTGAAAGGATACTTGTTT
CAGGCCGACAAGGGCACGGCATATTTTCAGGAAGACAAGTACTCACGGGT
TGGGTGGAAGTGTGAGCTGGTGAAGGGAAAGAAGCCAAAAGATGAAGATG
ATTTGCTGAAGGCCGACGAGAAAATGCTTGACCTTATAAAATTCCTAGAC
ACAATGCCCTGCGAAGCTGACATCAGATCCCGATTTGACATGGACAGCCT
GAACGGCTACCTGGCCGGTGCTCTACTGGCGACGCACTGGGACAGCTTGG
CAGCTAATCGCAACAACGACTTCATGTTCTACTTAAAGCGAGACGTGCTG
GACGACAACATGCAGCAAGTTCTTGACGATGAAGGCGAGCCCGTCGACGA
AAAAAAGTGGTATATGATCACATGGGATCTAGACAACACTCTGTGGGACT
GCCCTGGTGGATCGGAAGTGCAAGACCCGTACCGTGCATGGTTTTCAAAC
TATCTGTACGATCCTGCCCGTAAGGAGTCCAGAAAGACACGGTTGCTGGA
AAATATATTTGACAGAAGTGAAAACGAACAGATTCGCAGCGAGTACCGCG
GAGTACTCCGTGACCTTCTGAACGGGTTTTACAGCCAGAGCAAGTATGAG
AGTGAGGTGAACAGCTTGATGAAGCGGACCGGCGACGCAATCGAAGATAC
GCGACGGGAAGTGGCTGCTGCCGGCTGGCAAAATGGGTGGGGGGAGCGAA
ACAATCCGCATGATTTCGAACAAATCAAGAATCATGCGCGCGTGCGCAGA
AGCAAGGTCGGTGGGCAGCTTTAG
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