Gvermi7681.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7681.t1
Unique NameGvermi7681.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length596
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:2237767..2239554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1122963.AUHB01000022_gene2167
Preferred nameMA20_07595
PFAMs5_nucleotid_C,LysM,Metallophos
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00017
KEGG koko:K01081,ko:K11751
KEGG ReactionR00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346
KEGG Pathwayko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006163,GO:0006195,GO:0006213,GO:0006259,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007155,GO:0007159,GO:0008150,GO:0008152,GO:0008252,GO:0008253,GO:0009056,GO:0009058,GO:0009116,GO:0009117,GO:0009164,GO:0009166,GO:0009987,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019362,GO:0019438,GO:0019439,GO:0019637,GO:0019674,GO:0022610,GO:0031974,GO:0031981,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046135,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0051186,GO:0055086,GO:0070013,GO:0071704,GO:0071944,GO:0072521,GO:0072523,GO:0072524,GO:0072527,GO:0072529,GO:0090304,GO:0098609,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658
Evalue5.46e-71
EggNOG OGsCOG0737@1|root,COG0737@2|Bacteria,1MX03@1224|Proteobacteria,2TTUP@28211|Alphaproteobacteria,36YFZ@31993|Methylocystaceae
EC3.1.3.5,3.6.1.45
Description5'-nucleotidase, C-terminal domain
COG categoryF
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7681Gvermi7681Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 2237767..2239554 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7681.t1.stop1Gvermi7681.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 2237767..2237769 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7681.t1.CDS1Gvermi7681.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2237767..2239554 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7681.t1.exon1Gvermi7681.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2237767..2239554 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7681.t1.start1Gvermi7681.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 2239552..2239554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7681.t1Gvermi7681.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 2237767..2239554 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7681.t1 ID=Gvermi7681.t1|Name=Gvermi7681.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=596bp
MAPHSFPVRLLLAATAAAAAAAAFAAAADPTALRVCHTNDFHAKYLEVGD
SNVKCQWWQSVKSECYSGVARLATALRGLSCDVKVQAGDWVQGSLLDTVF
KQDIAVEAYKWINYDFATFGNHEFDYGNAHINYTVRAIAPRTTFLASNVF
FAGAGMEDLPLFRFVDRHSVCWVSALTRETLSLAAVEDSVSIEDERSFLR
KAIHQCAQQNNVIAVTHQGYNNDIETCRDVTEIDIIIGGHSHTDLSDGQY
PVQVVREDGSVCYVTQTFAHGRYVGVLDIVFDDDGHVSLKSHAYVPMDFR
VKPDLEVLFKVQAYNWQVAKKAGEVVTSVTDDVVGGQSCRGPERLPDDAS
YVSAGCTMGHLVCDAIMYVADDHASHLPRVCFMNGGTLRNSFKKGKVTLR
DIVNVLPFGNTIVSMKLKGSAILDAINHGLSVYGTDNRGPFPGGMTNMEV
KAEVDGAKPLGSMVTVESVTIGGETLEDDKEYVLVTNSYIATGGDGYSWP
VEGTDWGTMLREALQTYLEKHNPYSPVTEGRVFMRGANVASVNDGNAAFY
ASDSSDSAQGLMHESTGVETELEDPLVTAPQVTRNSKCYEQSCAA*
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spliced messenger RNA

>Gvermi7681.t1 ID=Gvermi7681.t1|Name=Gvermi7681.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at ScGOVlb_64:2237767..2239554- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCCACTCCTTCCCCGTCCGGCTTCTGCTTGCCGCAACCGCCGC
TGCTGCCGCCGCCGCCGCCTTCGCCGCTGCCGCCGACCCCACCGCGCTGC
GTGTATGCCACACCAATGATTTCCACGCAAAGTACCTAGAGGTCGGCGAC
TCCAACGTCAAGTGTCAGTGGTGGCAGTCCGTTAAAAGCGAATGCTACTC
GGGCGTCGCGCGCCTCGCCACCGCCCTCCGCGGCCTCTCTTGCGATGTCA
AGGTGCAAGCCGGCGATTGGGTGCAGGGCTCGCTGCTGGACACGGTCTTC
AAGCAGGACATCGCCGTCGAGGCCTACAAGTGGATCAACTACGACTTTGC
CACCTTTGGAAACCACGAGTTTGACTACGGAAACGCCCACATTAACTACA
CCGTGCGCGCCATCGCCCCGCGCACCACCTTCCTGGCGTCCAACGTTTTC
TTTGCGGGAGCCGGCATGGAAGACTTGCCGCTCTTCCGCTTCGTGGACCG
CCACAGCGTTTGCTGGGTGTCCGCCCTCACCCGAGAGACGCTCAGCCTGG
CCGCCGTCGAGGACAGTGTTTCCATCGAAGATGAGCGATCTTTCCTGCGC
AAGGCGATCCACCAATGCGCCCAGCAGAACAATGTCATCGCCGTCACCCA
TCAGGGCTACAACAACGACATCGAAACCTGTCGCGACGTCACCGAGATCG
ACATCATTATCGGCGGCCACTCCCACACCGACCTCAGCGACGGCCAGTAC
CCGGTGCAAGTCGTTCGCGAGGACGGATCCGTGTGCTACGTCACCCAGAC
GTTTGCGCACGGGCGCTATGTCGGCGTGCTGGACATCGTTTTTGATGACG
ACGGTCACGTGAGCCTCAAGTCGCATGCGTACGTCCCGATGGACTTTCGC
GTCAAGCCGGACCTTGAAGTGCTGTTCAAAGTGCAGGCGTACAATTGGCA
GGTCGCCAAGAAAGCGGGCGAGGTCGTCACCTCCGTCACGGATGATGTGG
TTGGCGGTCAGTCCTGCAGAGGTCCGGAAAGGCTACCGGATGACGCATCG
TACGTCAGTGCTGGTTGCACGATGGGCCACCTTGTGTGTGACGCTATCAT
GTACGTCGCCGATGACCATGCTTCACATCTTCCGCGCGTGTGTTTCATGA
ACGGTGGCACTTTGCGGAACTCGTTCAAAAAGGGAAAGGTCACGCTACGC
GACATTGTCAACGTTCTTCCTTTCGGAAACACCATCGTGTCAATGAAATT
GAAAGGATCTGCTATTCTTGACGCCATCAATCACGGCCTTTCTGTGTACG
GCACCGATAACAGAGGCCCATTCCCGGGAGGGATGACCAATATGGAAGTG
AAAGCTGAAGTGGATGGAGCGAAACCCCTCGGCAGCATGGTAACTGTCGA
AAGTGTCACCATTGGAGGAGAAACTCTGGAGGACGACAAGGAATACGTCT
TGGTGACAAATAGTTATATTGCAACCGGCGGAGATGGGTATTCATGGCCT
GTAGAAGGAACAGATTGGGGAACTATGCTTCGAGAAGCCTTGCAGACCTA
TCTTGAAAAGCACAATCCATACTCACCCGTTACGGAGGGAAGGGTGTTCA
TGAGAGGAGCTAATGTTGCATCCGTCAATGATGGTAATGCAGCCTTTTAC
GCGTCCGATAGTAGCGATTCCGCCCAGGGGTTGATGCACGAAAGTACGGG
GGTCGAAACCGAGCTAGAAGACCCCTTGGTTACAGCGCCACAGGTAACCA
GAAATAGCAAGTGTTACGAACAAAGTTGTGCGGCGTGA
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protein sequence of Gvermi7681.t1

>Gvermi7681.t1 ID=Gvermi7681.t1|Name=Gvermi7681.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=596bp
MAPHSFPVRLLLAATAAAAAAAAFAAAADPTALRVCHTNDFHAKYLEVGD
SNVKCQWWQSVKSECYSGVARLATALRGLSCDVKVQAGDWVQGSLLDTVF
KQDIAVEAYKWINYDFATFGNHEFDYGNAHINYTVRAIAPRTTFLASNVF
FAGAGMEDLPLFRFVDRHSVCWVSALTRETLSLAAVEDSVSIEDERSFLR
KAIHQCAQQNNVIAVTHQGYNNDIETCRDVTEIDIIIGGHSHTDLSDGQY
PVQVVREDGSVCYVTQTFAHGRYVGVLDIVFDDDGHVSLKSHAYVPMDFR
VKPDLEVLFKVQAYNWQVAKKAGEVVTSVTDDVVGGQSCRGPERLPDDAS
YVSAGCTMGHLVCDAIMYVADDHASHLPRVCFMNGGTLRNSFKKGKVTLR
DIVNVLPFGNTIVSMKLKGSAILDAINHGLSVYGTDNRGPFPGGMTNMEV
KAEVDGAKPLGSMVTVESVTIGGETLEDDKEYVLVTNSYIATGGDGYSWP
VEGTDWGTMLREALQTYLEKHNPYSPVTEGRVFMRGANVASVNDGNAAFY
ASDSSDSAQGLMHESTGVETELEDPLVTAPQVTRNSKCYEQSCAA*
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mRNA from alignment at ScGOVlb_64:2237767..2239554-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7681.t1 ID=Gvermi7681.t1|Name=Gvermi7681.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at ScGOVlb_64:2237767..2239554- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCCCACTCCTTCCCCGTCCGGCTTCTGCTTGCCGCAACCGCCGC
TGCTGCCGCCGCCGCCGCCTTCGCCGCTGCCGCCGACCCCACCGCGCTGC
GTGTATGCCACACCAATGATTTCCACGCAAAGTACCTAGAGGTCGGCGAC
TCCAACGTCAAGTGTCAGTGGTGGCAGTCCGTTAAAAGCGAATGCTACTC
GGGCGTCGCGCGCCTCGCCACCGCCCTCCGCGGCCTCTCTTGCGATGTCA
AGGTGCAAGCCGGCGATTGGGTGCAGGGCTCGCTGCTGGACACGGTCTTC
AAGCAGGACATCGCCGTCGAGGCCTACAAGTGGATCAACTACGACTTTGC
CACCTTTGGAAACCACGAGTTTGACTACGGAAACGCCCACATTAACTACA
CCGTGCGCGCCATCGCCCCGCGCACCACCTTCCTGGCGTCCAACGTTTTC
TTTGCGGGAGCCGGCATGGAAGACTTGCCGCTCTTCCGCTTCGTGGACCG
CCACAGCGTTTGCTGGGTGTCCGCCCTCACCCGAGAGACGCTCAGCCTGG
CCGCCGTCGAGGACAGTGTTTCCATCGAAGATGAGCGATCTTTCCTGCGC
AAGGCGATCCACCAATGCGCCCAGCAGAACAATGTCATCGCCGTCACCCA
TCAGGGCTACAACAACGACATCGAAACCTGTCGCGACGTCACCGAGATCG
ACATCATTATCGGCGGCCACTCCCACACCGACCTCAGCGACGGCCAGTAC
CCGGTGCAAGTCGTTCGCGAGGACGGATCCGTGTGCTACGTCACCCAGAC
GTTTGCGCACGGGCGCTATGTCGGCGTGCTGGACATCGTTTTTGATGACG
ACGGTCACGTGAGCCTCAAGTCGCATGCGTACGTCCCGATGGACTTTCGC
GTCAAGCCGGACCTTGAAGTGCTGTTCAAAGTGCAGGCGTACAATTGGCA
GGTCGCCAAGAAAGCGGGCGAGGTCGTCACCTCCGTCACGGATGATGTGG
TTGGCGGTCAGTCCTGCAGAGGTCCGGAAAGGCTACCGGATGACGCATCG
TACGTCAGTGCTGGTTGCACGATGGGCCACCTTGTGTGTGACGCTATCAT
GTACGTCGCCGATGACCATGCTTCACATCTTCCGCGCGTGTGTTTCATGA
ACGGTGGCACTTTGCGGAACTCGTTCAAAAAGGGAAAGGTCACGCTACGC
GACATTGTCAACGTTCTTCCTTTCGGAAACACCATCGTGTCAATGAAATT
GAAAGGATCTGCTATTCTTGACGCCATCAATCACGGCCTTTCTGTGTACG
GCACCGATAACAGAGGCCCATTCCCGGGAGGGATGACCAATATGGAAGTG
AAAGCTGAAGTGGATGGAGCGAAACCCCTCGGCAGCATGGTAACTGTCGA
AAGTGTCACCATTGGAGGAGAAACTCTGGAGGACGACAAGGAATACGTCT
TGGTGACAAATAGTTATATTGCAACCGGCGGAGATGGGTATTCATGGCCT
GTAGAAGGAACAGATTGGGGAACTATGCTTCGAGAAGCCTTGCAGACCTA
TCTTGAAAAGCACAATCCATACTCACCCGTTACGGAGGGAAGGGTGTTCA
TGAGAGGAGCTAATGTTGCATCCGTCAATGATGGTAATGCAGCCTTTTAC
GCGTCCGATAGTAGCGATTCCGCCCAGGGGTTGATGCACGAAAGTACGGG
GGTCGAAACCGAGCTAGAAGACCCCTTGGTTACAGCGCCACAGGTAACCA
GAAATAGCAAGTGTTACGAACAAAGTTGTGCGGCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_64:2237767..2239554-

>Gvermi7681.t1 ID=Gvermi7681.t1|Name=Gvermi7681.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1788bp|location=Sequence derived from alignment at ScGOVlb_64:2237767..2239554- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCCCACTCCTTCCCCGTCCGGCTTCTGCTTGCCGCAACCGCCGC
TGCTGCCGCCGCCGCCGCCTTCGCCGCTGCCGCCGACCCCACCGCGCTGC
GTGTATGCCACACCAATGATTTCCACGCAAAGTACCTAGAGGTCGGCGAC
TCCAACGTCAAGTGTCAGTGGTGGCAGTCCGTTAAAAGCGAATGCTACTC
GGGCGTCGCGCGCCTCGCCACCGCCCTCCGCGGCCTCTCTTGCGATGTCA
AGGTGCAAGCCGGCGATTGGGTGCAGGGCTCGCTGCTGGACACGGTCTTC
AAGCAGGACATCGCCGTCGAGGCCTACAAGTGGATCAACTACGACTTTGC
CACCTTTGGAAACCACGAGTTTGACTACGGAAACGCCCACATTAACTACA
CCGTGCGCGCCATCGCCCCGCGCACCACCTTCCTGGCGTCCAACGTTTTC
TTTGCGGGAGCCGGCATGGAAGACTTGCCGCTCTTCCGCTTCGTGGACCG
CCACAGCGTTTGCTGGGTGTCCGCCCTCACCCGAGAGACGCTCAGCCTGG
CCGCCGTCGAGGACAGTGTTTCCATCGAAGATGAGCGATCTTTCCTGCGC
AAGGCGATCCACCAATGCGCCCAGCAGAACAATGTCATCGCCGTCACCCA
TCAGGGCTACAACAACGACATCGAAACCTGTCGCGACGTCACCGAGATCG
ACATCATTATCGGCGGCCACTCCCACACCGACCTCAGCGACGGCCAGTAC
CCGGTGCAAGTCGTTCGCGAGGACGGATCCGTGTGCTACGTCACCCAGAC
GTTTGCGCACGGGCGCTATGTCGGCGTGCTGGACATCGTTTTTGATGACG
ACGGTCACGTGAGCCTCAAGTCGCATGCGTACGTCCCGATGGACTTTCGC
GTCAAGCCGGACCTTGAAGTGCTGTTCAAAGTGCAGGCGTACAATTGGCA
GGTCGCCAAGAAAGCGGGCGAGGTCGTCACCTCCGTCACGGATGATGTGG
TTGGCGGTCAGTCCTGCAGAGGTCCGGAAAGGCTACCGGATGACGCATCG
TACGTCAGTGCTGGTTGCACGATGGGCCACCTTGTGTGTGACGCTATCAT
GTACGTCGCCGATGACCATGCTTCACATCTTCCGCGCGTGTGTTTCATGA
ACGGTGGCACTTTGCGGAACTCGTTCAAAAAGGGAAAGGTCACGCTACGC
GACATTGTCAACGTTCTTCCTTTCGGAAACACCATCGTGTCAATGAAATT
GAAAGGATCTGCTATTCTTGACGCCATCAATCACGGCCTTTCTGTGTACG
GCACCGATAACAGAGGCCCATTCCCGGGAGGGATGACCAATATGGAAGTG
AAAGCTGAAGTGGATGGAGCGAAACCCCTCGGCAGCATGGTAACTGTCGA
AAGTGTCACCATTGGAGGAGAAACTCTGGAGGACGACAAGGAATACGTCT
TGGTGACAAATAGTTATATTGCAACCGGCGGAGATGGGTATTCATGGCCT
GTAGAAGGAACAGATTGGGGAACTATGCTTCGAGAAGCCTTGCAGACCTA
TCTTGAAAAGCACAATCCATACTCACCCGTTACGGAGGGAAGGGTGTTCA
TGAGAGGAGCTAATGTTGCATCCGTCAATGATGGTAATGCAGCCTTTTAC
GCGTCCGATAGTAGCGATTCCGCCCAGGGGTTGATGCACGAAAGTACGGG
GGTCGAAACCGAGCTAGAAGACCCCTTGGTTACAGCGCCACAGGTAACCA
GAAATAGCAAGTGTTACGAACAAAGTTGTGCGGCGTGA
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