Gvermi12520.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12520.t1
Unique NameGvermi12520.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length109
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_6159contigScGOVlb_6159:130..541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12520Gvermi12520Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_6159 130..541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12520.t1Gvermi12520.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_6159 130..541 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12520.t1.start1Gvermi12520.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_6159 130..132 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12520.t1.CDS1Gvermi12520.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_6159 130..162 +
Gvermi12520.t1.CDS2Gvermi12520.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_6159 248..541 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12520.t1.exon1Gvermi12520.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_6159 130..162 +
Gvermi12520.t1.exon2Gvermi12520.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_6159 248..541 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12520.t1.intron1Gvermi12520.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_6159 163..247 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12520.t1.stop1Gvermi12520.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_6159 539..541 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12520.t1 ID=Gvermi12520.t1|Name=Gvermi12520.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=109bp
LFPHGQPLEQGMMVEREALYGARKRNVAPTRSSVVPRRDPWSLKHRPAHD
DSCRAAYMEWDSFVRDSLNRRMLQYRAKAAQVYAHITDAQRQGISDAGQL
FSALMDSQ*
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spliced messenger RNA

>Gvermi12520.t1 ID=Gvermi12520.t1|Name=Gvermi12520.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=327bp|location=Sequence derived from alignment at ScGOVlb_6159:130..541+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTTTCCGCACGGCCAACCGCTCGAGCAGGGCATGATGGTGGAACGCGA
GGCTCTCTACGGTGCCCGCAAGCGCAATGTCGCGCCAACGCGATCATCAG
TGGTGCCAAGGCGCGATCCGTGGAGCCTCAAGCACCGTCCTGCGCACGAC
GACTCCTGCAGAGCAGCGTACATGGAATGGGACAGCTTTGTACGAGATTC
GCTCAACCGGCGAATGCTGCAGTACAGGGCAAAAGCTGCTCAGGTGTACG
CCCATATAACAGACGCTCAGCGCCAAGGAATTTCCGACGCTGGGCAGCTC
TTCAGCGCACTTATGGATTCGCAGTAG
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protein sequence of Gvermi12520.t1

>Gvermi12520.t1 ID=Gvermi12520.t1|Name=Gvermi12520.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=109bp
LFPHGQPLEQGMMVEREALYGARKRNVAPTRSSVVPRRDPWSLKHRPAHD
DSCRAAYMEWDSFVRDSLNRRMLQYRAKAAQVYAHITDAQRQGISDAGQL
FSALMDSQ*
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mRNA from alignment at ScGOVlb_6159:130..541+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12520.t1 ID=Gvermi12520.t1|Name=Gvermi12520.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=412bp|location=Sequence derived from alignment at ScGOVlb_6159:130..541+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTTTCCGCACGGCCAACCGCTCGAGCAGGGCGTGGCACAATGCACGCG
ATTTGGTTCTGATGTCCTTGTATTGCCAAATGTCGTACTACAACGGCAAG
GCGTTTGCTCTGCAGGAGATGATGGTGGAACGCGAGGCTCTCTACGGTGC
CCGCAAGCGCAATGTCGCGCCAACGCGATCATCAGTGGTGCCAAGGCGCG
ATCCGTGGAGCCTCAAGCACCGTCCTGCGCACGACGACTCCTGCAGAGCA
GCGTACATGGAATGGGACAGCTTTGTACGAGATTCGCTCAACCGGCGAAT
GCTGCAGTACAGGGCAAAAGCTGCTCAGGTGTACGCCCATATAACAGACG
CTCAGCGCCAAGGAATTTCCGACGCTGGGCAGCTCTTCAGCGCACTTATG
GATTCGCAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_6159:130..541+

>Gvermi12520.t1 ID=Gvermi12520.t1|Name=Gvermi12520.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=327bp|location=Sequence derived from alignment at ScGOVlb_6159:130..541+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTTTCCGCACGGCCAACCGCTCGAGCAGGGCATGATGGTGGAACGCGA
GGCTCTCTACGGTGCCCGCAAGCGCAATGTCGCGCCAACGCGATCATCAG
TGGTGCCAAGGCGCGATCCGTGGAGCCTCAAGCACCGTCCTGCGCACGAC
GACTCCTGCAGAGCAGCGTACATGGAATGGGACAGCTTTGTACGAGATTC
GCTCAACCGGCGAATGCTGCAGTACAGGGCAAAAGCTGCTCAGGTGTACG
CCCATATAACAGACGCTCAGCGCCAAGGAATTTCCGACGCTGGGCAGCTC
TTCAGCGCACTTATGGATTCGCAGTAG
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