Gvermi10508.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi10508.t1
Unique NameGvermi10508.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_16contigScGOVlb_16:87516..88205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.E7BWD8
Preferred nameatpB
PFAMsATP-synt_ab,ATP-synt_ab_N
Max annot lvl2836|Bacillariophyta
KEGG koko:K02112
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,map00190,map00195,map01100
KEGG ModuleM00157
Evalue8.68e-132
EggNOG OGsCOG0055@1|root,KOG1350@2759|Eukaryota,2XE2T@2836|Bacillariophyta
EC3.6.3.14
DescriptionProduces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
COG categoryC
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi10508Gvermi10508Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_16 87516..88205 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10508.t1.start1Gvermi10508.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_16 87516..87518 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10508.t1.CDS1Gvermi10508.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_16 87516..88205 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10508.t1.exon1Gvermi10508.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_16 87516..88205 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10508.t1.stop1Gvermi10508.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_16 88203..88205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi10508.t1Gvermi10508.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_16 87516..88205 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi10508.t1 ID=Gvermi10508.t1|Name=Gvermi10508.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=230bp
MVKTTVNKGYVTQIIGPVLDIQFPEGNLPPIYSAIKIGLTDGTETVVEVQ
QLLGDNRVRAVSMRSTDGLKRGIEAVDLGTPISVPVGTPTLGRIFNVIGE
PVDEQGVVQYKETLPIHRDAPAFTDLETKPSIFETGIKVVDLLAPYRRGG
KIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYEEM
KESGVINEKEFSESKVALVYGQMVRQVLT*
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spliced messenger RNA

>Gvermi10508.t1 ID=Gvermi10508.t1|Name=Gvermi10508.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=690bp|location=Sequence derived from alignment at ScGOVlb_16:87516..88205+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAAAGACTACGGTAAATAAAGGCTATGTTACCCAAATTATTGGTCC
TGTATTAGATATTCAATTTCCTGAAGGAAACTTACCTCCTATTTACAGTG
CAATCAAAATTGGTTTAACTGATGGAACAGAAACTGTGGTTGAAGTTCAA
CAATTACTAGGAGATAATCGAGTAAGAGCAGTATCTATGCGTTCTACTGA
TGGCTTAAAACGTGGTATTGAAGCTGTTGATCTAGGAACTCCTATTAGTG
TACCAGTAGGAACTCCTACATTAGGAAGAATTTTTAATGTAATTGGAGAA
CCCGTAGATGAACAAGGGGTTGTTCAATACAAAGAAACTTTACCAATTCA
TCGTGATGCTCCTGCTTTTACAGATTTGGAAACAAAACCATCTATTTTTG
AAACTGGTATTAAAGTTGTAGATCTATTAGCTCCATATCGTCGTGGGGGT
AAAATTGGTCTATTTGGCGGTGCTGGTGTAGGAAAAACTGTATTAATCAT
GGAATTGATAAATAATATTGCAAAAGCCCATGGTGGTGTTTCAGTATTTG
GAGGAGTAGGAGAACGAACACGCGAAGGGAATGATTTATATGAAGAGATG
AAAGAATCAGGGGTAATTAATGAAAAAGAATTCTCTGAATCAAAAGTTGC
GTTAGTTTACGGTCAAATGGTGCGACAAGTTCTTACATAA
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protein sequence of Gvermi10508.t1

>Gvermi10508.t1 ID=Gvermi10508.t1|Name=Gvermi10508.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=230bp
MVKTTVNKGYVTQIIGPVLDIQFPEGNLPPIYSAIKIGLTDGTETVVEVQ
QLLGDNRVRAVSMRSTDGLKRGIEAVDLGTPISVPVGTPTLGRIFNVIGE
PVDEQGVVQYKETLPIHRDAPAFTDLETKPSIFETGIKVVDLLAPYRRGG
KIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYEEM
KESGVINEKEFSESKVALVYGQMVRQVLT*
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mRNA from alignment at ScGOVlb_16:87516..88205+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi10508.t1 ID=Gvermi10508.t1|Name=Gvermi10508.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=690bp|location=Sequence derived from alignment at ScGOVlb_16:87516..88205+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTAAAGACTACGGTAAATAAAGGCTATGTTACCCAAATTATTGGTCC
TGTATTAGATATTCAATTTCCTGAAGGAAACTTACCTCCTATTTACAGTG
CAATCAAAATTGGTTTAACTGATGGAACAGAAACTGTGGTTGAAGTTCAA
CAATTACTAGGAGATAATCGAGTAAGAGCAGTATCTATGCGTTCTACTGA
TGGCTTAAAACGTGGTATTGAAGCTGTTGATCTAGGAACTCCTATTAGTG
TACCAGTAGGAACTCCTACATTAGGAAGAATTTTTAATGTAATTGGAGAA
CCCGTAGATGAACAAGGGGTTGTTCAATACAAAGAAACTTTACCAATTCA
TCGTGATGCTCCTGCTTTTACAGATTTGGAAACAAAACCATCTATTTTTG
AAACTGGTATTAAAGTTGTAGATCTATTAGCTCCATATCGTCGTGGGGGT
AAAATTGGTCTATTTGGCGGTGCTGGTGTAGGAAAAACTGTATTAATCAT
GGAATTGATAAATAATATTGCAAAAGCCCATGGTGGTGTTTCAGTATTTG
GAGGAGTAGGAGAACGAACACGCGAAGGGAATGATTTATATGAAGAGATG
AAAGAATCAGGGGTAATTAATGAAAAAGAATTCTCTGAATCAAAAGTTGC
GTTAGTTTACGGTCAAATGGTGCGACAAGTTCTTACATAA
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Coding sequence (CDS) from alignment at ScGOVlb_16:87516..88205+

>Gvermi10508.t1 ID=Gvermi10508.t1|Name=Gvermi10508.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=690bp|location=Sequence derived from alignment at ScGOVlb_16:87516..88205+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTAAAGACTACGGTAAATAAAGGCTATGTTACCCAAATTATTGGTCC
TGTATTAGATATTCAATTTCCTGAAGGAAACTTACCTCCTATTTACAGTG
CAATCAAAATTGGTTTAACTGATGGAACAGAAACTGTGGTTGAAGTTCAA
CAATTACTAGGAGATAATCGAGTAAGAGCAGTATCTATGCGTTCTACTGA
TGGCTTAAAACGTGGTATTGAAGCTGTTGATCTAGGAACTCCTATTAGTG
TACCAGTAGGAACTCCTACATTAGGAAGAATTTTTAATGTAATTGGAGAA
CCCGTAGATGAACAAGGGGTTGTTCAATACAAAGAAACTTTACCAATTCA
TCGTGATGCTCCTGCTTTTACAGATTTGGAAACAAAACCATCTATTTTTG
AAACTGGTATTAAAGTTGTAGATCTATTAGCTCCATATCGTCGTGGGGGT
AAAATTGGTCTATTTGGCGGTGCTGGTGTAGGAAAAACTGTATTAATCAT
GGAATTGATAAATAATATTGCAAAAGCCCATGGTGGTGTTTCAGTATTTG
GAGGAGTAGGAGAACGAACACGCGAAGGGAATGATTTATATGAAGAGATG
AAAGAATCAGGGGTAATTAATGAAAAAGAATTCTCTGAATCAAAAGTTGC
GTTAGTTTACGGTCAAATGGTGCGACAAGTTCTTACATAA
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