Gvermi2175.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi2175.t1
Unique Name	Gvermi2175.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	411

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_52	contig	ScGOVlb_52:63800..65032 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	159749.E7BWP5
Preferred name	tufA
PFAMs	GTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02358
GOs	GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0009295,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0016020,GO:0020011,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031981,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0055035,GO:0070013
Evalue	2.99e-271
EggNOG OGs	COG0050@1\|root,KOG0460@2759\|Eukaryota,2XBKK@2836\|Bacillariophyta
Description	Elongation factor Tu
COG category	J
BRITE	ko00000,ko03012,ko03029,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi2175	Gvermi2175	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_52 63800..65032 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2175.t1.start1	Gvermi2175.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_52 63800..63802 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2175.t1.CDS1	Gvermi2175.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_52 63800..65032 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2175.t1.exon1	Gvermi2175.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_52 63800..65032 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2175.t1.stop1	Gvermi2175.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_52 65030..65032 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2175.t1	Gvermi2175.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_52 63800..65032 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_52:63800..65032+
coding sequence from alignment at ScGOVlb_52:63800..65032+

mRNA sequence

>Gvermi2175.t1 ID=Gvermi2175.t1|Name=Gvermi2175.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=411bp
MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALGNSDAKAKAYED
IDGAPEERARGITINTAHVEYETEARHYAHVDCPGHADYVKNMITGAAQM
DGAILVVSAADGPMPQTREHILLSKQVGVPDIVVFLNKEDQVDDAELLEL
VELEVRELLSAYDFPGEDIPICTGSALQAIEAITSNPDTKRGDNPWVDKI
YSLMDAVDEYIPTPERDTEKTFLMAIEDVFSITGRGTVATGRIERGIVKV
GDNVEIVGIEDTQTTTITGIEMFQKTLEEGFAGDNVGILLRGITRENIER
GMVLAKPGTITPHTNFESEVYVLTKDEGGRHTPFFTGYRPQFYVRTTDVT
GAITQFTADDGSIVEMVMPGDRIKMTAELIYPVAIEEGMRFAIREGGRTI
GAGVVSKIVK*

spliced messenger RNA

>Gvermi2175.t1 ID=Gvermi2175.t1|Name=Gvermi2175.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1233bp|location=Sequence derived from alignment at ScGOVlb_52:63800..65032+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACGTGAAAAATTTGAACGTACAAAACCACACGTTAACATTGGTAC
TATTGGTCATGTAGACCATGGAAAAACAACTTTAACTGCTGCAATTACTG
CGACATTAGCATTAGGAAATTCAGATGCGAAAGCTAAAGCTTATGAAGAT
ATCGATGGTGCACCAGAAGAGCGAGCACGTGGAATTACAATTAATACAGC
TCACGTTGAATACGAAACTGAAGCTCGTCATTATGCTCACGTAGATTGTC
CAGGTCACGCAGATTATGTAAAAAATATGATTACGGGTGCAGCTCAAATG
GATGGCGCAATTTTAGTAGTGTCAGCGGCAGATGGACCCATGCCACAAAC
CCGAGAACATATTTTATTATCAAAACAAGTAGGTGTACCAGATATCGTTG
TATTCTTAAATAAAGAAGATCAAGTTGATGATGCTGAACTACTGGAATTA
GTAGAATTAGAAGTTCGTGAATTGCTTTCAGCTTACGATTTTCCAGGGGA
AGATATCCCAATTTGTACTGGATCAGCATTACAAGCAATTGAAGCGATTA
CATCAAATCCAGATACCAAACGTGGTGACAATCCATGGGTTGATAAAATT
TATTCGTTAATGGATGCTGTTGATGAATATATTCCAACACCTGAACGTGA
CACAGAAAAAACATTTTTAATGGCAATTGAGGATGTATTCTCAATTACTG
GTCGTGGTACGGTGGCGACAGGGCGGATTGAACGTGGGATTGTTAAAGTA
GGTGACAACGTTGAAATTGTTGGGATTGAAGATACTCAGACAACAACAAT
TACTGGTATCGAAATGTTCCAAAAAACATTAGAAGAAGGATTTGCTGGTG
ATAATGTTGGTATCCTATTACGCGGTATTACTCGTGAAAATATTGAGCGT
GGTATGGTATTAGCAAAGCCTGGTACAATTACTCCCCATACAAATTTTGA
ATCAGAAGTTTATGTTTTAACAAAAGATGAAGGTGGTCGTCACACTCCAT
TCTTTACAGGCTATAGACCACAATTTTATGTAAGAACAACTGATGTGACA
GGTGCAATTACACAATTTACAGCAGATGATGGTTCAATCGTTGAAATGGT
AATGCCAGGCGATCGTATCAAAATGACTGCTGAATTAATTTATCCTGTAG
CTATTGAAGAAGGTATGAGATTTGCGATTCGTGAAGGTGGTCGTACTATC
GGTGCAGGTGTAGTTTCTAAAATTGTTAAATAA

protein sequence of Gvermi2175.t1

>Gvermi2175.t1 ID=Gvermi2175.t1|Name=Gvermi2175.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=411bp
MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALGNSDAKAKAYED
IDGAPEERARGITINTAHVEYETEARHYAHVDCPGHADYVKNMITGAAQM
DGAILVVSAADGPMPQTREHILLSKQVGVPDIVVFLNKEDQVDDAELLEL
VELEVRELLSAYDFPGEDIPICTGSALQAIEAITSNPDTKRGDNPWVDKI
YSLMDAVDEYIPTPERDTEKTFLMAIEDVFSITGRGTVATGRIERGIVKV
GDNVEIVGIEDTQTTTITGIEMFQKTLEEGFAGDNVGILLRGITRENIER
GMVLAKPGTITPHTNFESEVYVLTKDEGGRHTPFFTGYRPQFYVRTTDVT
GAITQFTADDGSIVEMVMPGDRIKMTAELIYPVAIEEGMRFAIREGGRTI
GAGVVSKIVK*

mRNA from alignment at ScGOVlb_52:63800..65032+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi2175.t1 ID=Gvermi2175.t1|Name=Gvermi2175.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1233bp|location=Sequence derived from alignment at ScGOVlb_52:63800..65032+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCACGTGAAAAATTTGAACGTACAAAACCACACGTTAACATTGGTAC
TATTGGTCATGTAGACCATGGAAAAACAACTTTAACTGCTGCAATTACTG
CGACATTAGCATTAGGAAATTCAGATGCGAAAGCTAAAGCTTATGAAGAT
ATCGATGGTGCACCAGAAGAGCGAGCACGTGGAATTACAATTAATACAGC
TCACGTTGAATACGAAACTGAAGCTCGTCATTATGCTCACGTAGATTGTC
CAGGTCACGCAGATTATGTAAAAAATATGATTACGGGTGCAGCTCAAATG
GATGGCGCAATTTTAGTAGTGTCAGCGGCAGATGGACCCATGCCACAAAC
CCGAGAACATATTTTATTATCAAAACAAGTAGGTGTACCAGATATCGTTG
TATTCTTAAATAAAGAAGATCAAGTTGATGATGCTGAACTACTGGAATTA
GTAGAATTAGAAGTTCGTGAATTGCTTTCAGCTTACGATTTTCCAGGGGA
AGATATCCCAATTTGTACTGGATCAGCATTACAAGCAATTGAAGCGATTA
CATCAAATCCAGATACCAAACGTGGTGACAATCCATGGGTTGATAAAATT
TATTCGTTAATGGATGCTGTTGATGAATATATTCCAACACCTGAACGTGA
CACAGAAAAAACATTTTTAATGGCAATTGAGGATGTATTCTCAATTACTG
GTCGTGGTACGGTGGCGACAGGGCGGATTGAACGTGGGATTGTTAAAGTA
GGTGACAACGTTGAAATTGTTGGGATTGAAGATACTCAGACAACAACAAT
TACTGGTATCGAAATGTTCCAAAAAACATTAGAAGAAGGATTTGCTGGTG
ATAATGTTGGTATCCTATTACGCGGTATTACTCGTGAAAATATTGAGCGT
GGTATGGTATTAGCAAAGCCTGGTACAATTACTCCCCATACAAATTTTGA
ATCAGAAGTTTATGTTTTAACAAAAGATGAAGGTGGTCGTCACACTCCAT
TCTTTACAGGCTATAGACCACAATTTTATGTAAGAACAACTGATGTGACA
GGTGCAATTACACAATTTACAGCAGATGATGGTTCAATCGTTGAAATGGT
AATGCCAGGCGATCGTATCAAAATGACTGCTGAATTAATTTATCCTGTAG
CTATTGAAGAAGGTATGAGATTTGCGATTCGTGAAGGTGGTCGTACTATC
GGTGCAGGTGTAGTTTCTAAAATTGTTAAATAA

Coding sequence (CDS) from alignment at ScGOVlb_52:63800..65032+

>Gvermi2175.t1 ID=Gvermi2175.t1|Name=Gvermi2175.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1233bp|location=Sequence derived from alignment at ScGOVlb_52:63800..65032+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCACGTGAAAAATTTGAACGTACAAAACCACACGTTAACATTGGTAC
TATTGGTCATGTAGACCATGGAAAAACAACTTTAACTGCTGCAATTACTG
CGACATTAGCATTAGGAAATTCAGATGCGAAAGCTAAAGCTTATGAAGAT
ATCGATGGTGCACCAGAAGAGCGAGCACGTGGAATTACAATTAATACAGC
TCACGTTGAATACGAAACTGAAGCTCGTCATTATGCTCACGTAGATTGTC
CAGGTCACGCAGATTATGTAAAAAATATGATTACGGGTGCAGCTCAAATG
GATGGCGCAATTTTAGTAGTGTCAGCGGCAGATGGACCCATGCCACAAAC
CCGAGAACATATTTTATTATCAAAACAAGTAGGTGTACCAGATATCGTTG
TATTCTTAAATAAAGAAGATCAAGTTGATGATGCTGAACTACTGGAATTA
GTAGAATTAGAAGTTCGTGAATTGCTTTCAGCTTACGATTTTCCAGGGGA
AGATATCCCAATTTGTACTGGATCAGCATTACAAGCAATTGAAGCGATTA
CATCAAATCCAGATACCAAACGTGGTGACAATCCATGGGTTGATAAAATT
TATTCGTTAATGGATGCTGTTGATGAATATATTCCAACACCTGAACGTGA
CACAGAAAAAACATTTTTAATGGCAATTGAGGATGTATTCTCAATTACTG
GTCGTGGTACGGTGGCGACAGGGCGGATTGAACGTGGGATTGTTAAAGTA
GGTGACAACGTTGAAATTGTTGGGATTGAAGATACTCAGACAACAACAAT
TACTGGTATCGAAATGTTCCAAAAAACATTAGAAGAAGGATTTGCTGGTG
ATAATGTTGGTATCCTATTACGCGGTATTACTCGTGAAAATATTGAGCGT
GGTATGGTATTAGCAAAGCCTGGTACAATTACTCCCCATACAAATTTTGA
ATCAGAAGTTTATGTTTTAACAAAAGATGAAGGTGGTCGTCACACTCCAT
TCTTTACAGGCTATAGACCACAATTTTATGTAAGAACAACTGATGTGACA
GGTGCAATTACACAATTTACAGCAGATGATGGTTCAATCGTTGAAATGGT
AATGCCAGGCGATCGTATCAAAATGACTGCTGAATTAATTTATCCTGTAG
CTATTGAAGAAGGTATGAGATTTGCGATTCGTGAAGGTGGTCGTACTATC
GGTGCAGGTGTAGTTTCTAAAATTGTTAAATAA