Gvermi2172.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2172.t2
Unique NameGvermi2172.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length614
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_52contigScGOVlb_52:46664..48505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.E7BWL6
Preferred namednaK
PFAMsHSP70
Max annot lvl2759|Eukaryota
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
GOsGO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006605,GO:0006810,GO:0006886,GO:0006950,GO:0008104,GO:0008144,GO:0008150,GO:0009266,GO:0009408,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009941,GO:0010035,GO:0010038,GO:0015031,GO:0015833,GO:0017076,GO:0030554,GO:0031967,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0033365,GO:0034613,GO:0035639,GO:0036094,GO:0042221,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045036,GO:0045184,GO:0046686,GO:0046907,GO:0048046,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072596,GO:0072598,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Evalue3.07e-305
EggNOG OGsCOG0443@1|root,KOG0102@2759|Eukaryota,2XAKJ@2836|Bacillariophyta
Descriptionheat shock
COG categoryO
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2172Gvermi2172Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_52 46664..48505 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2172.t2.stop1Gvermi2172.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_52 46664..46666 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2172.t2.CDS1Gvermi2172.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_52 46664..48505 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2172.t2.exon1Gvermi2172.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_52 46664..48505 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2172.t2.start1Gvermi2172.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_52 48503..48505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2172.t2Gvermi2172.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_52 46664..48505 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2172.t2 ID=Gvermi2172.t2|Name=Gvermi2172.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=614bp
MTKVVGIDLGTTNSVVAAIEGGQPSVIINAEGLRTTPSIVAYTKKQELLV
GQIAKRQAVINPANTFFSVKRFIGSKEGEIAEESKKLPYKVSKDENDNIK
IKCPALNKDFSPEELSAQILRKLINDATDYLGQEVTQAVITVPAYFNDSQ
RQATMDAGKIAGIEVLRIINEPTAASLAYGLDKKQNETILVFDLGGGTFD
VSILEVGDGIFEVLSTAGDTTLGGDDFDNLLVKWLMNDFKEKEGIDLSSD
IQALQRLTEAAEKAKIELSTVEKTTIHLPFITADKTGPKHIEKELTRDIF
EKLCQELINRCRIPVEKSLNDARLDKSDINEIVLVGGSTRIPAVQKLVES
LTGKKPNQSVNPDEVVAIGAAIQAGILAGEIKDILLLDVTPLSLGVETLG
GVMTKIIARNTTIPVKKSETFSTAVENQTNVEIHILQGERELVSGNKSLG
NFRLDGIPPADRGVPQIEVTFDIDVDGILSVKAREKETGVEQSVTIQGAS
NLNEAEVEGMLEEAEKFASADKEKRQTIDLKNQAEALCFEAEKELSLLED
TGSEETKQKVTKLIETIRQEIQVDNFENLKLQVEELKTEMKNMVEAKMNS
ESNSDPMSNLNDL*
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spliced messenger RNA

>Gvermi2172.t2 ID=Gvermi2172.t2|Name=Gvermi2172.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1842bp|location=Sequence derived from alignment at ScGOVlb_52:46664..48505- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAAAGTTGTAGGAATCGATTTAGGTACGACAAATTCTGTAGTTGC
TGCAATTGAAGGTGGTCAACCTAGTGTAATTATAAATGCTGAAGGATTAC
GAACAACTCCTTCTATTGTTGCATATACCAAAAAACAAGAGTTACTAGTA
GGTCAAATTGCTAAACGCCAAGCGGTAATTAATCCAGCCAATACTTTTTT
TTCTGTCAAACGATTTATTGGATCAAAAGAAGGAGAAATTGCGGAAGAAT
CAAAAAAATTACCTTATAAGGTAAGTAAAGATGAAAATGATAATATTAAA
ATTAAATGTCCAGCATTAAATAAAGATTTTAGTCCAGAAGAACTTTCTGC
ACAAATTTTAAGAAAATTAATTAACGATGCAACAGATTATTTAGGACAAG
AAGTAACACAAGCAGTTATTACTGTACCAGCTTATTTTAATGATTCACAA
AGACAAGCAACAATGGATGCTGGAAAAATTGCCGGTATTGAAGTGTTACG
TATTATTAATGAACCAACAGCTGCTTCATTAGCTTATGGTTTAGATAAAA
AACAAAATGAAACTATATTAGTTTTTGATTTAGGTGGGGGAACATTTGAT
GTTTCAATTTTAGAAGTTGGTGATGGTATTTTTGAGGTTTTATCAACAGC
TGGAGATACAACATTAGGTGGTGATGACTTTGATAATCTTCTTGTTAAGT
GGTTAATGAATGATTTCAAAGAAAAAGAAGGAATTGATTTAAGTAGTGAT
ATTCAAGCTTTACAACGTCTAACAGAAGCTGCTGAAAAAGCAAAAATTGA
ATTATCAACTGTTGAAAAAACGACTATTCATTTACCTTTTATTACGGCAG
ATAAGACAGGTCCAAAACATATTGAAAAAGAATTAACTCGAGATATTTTT
GAGAAGCTATGTCAAGAATTAATTAACCGTTGCCGAATTCCTGTTGAGAA
ATCATTAAATGATGCTAGGCTTGATAAATCGGATATTAATGAAATTGTTT
TAGTTGGTGGTTCAACACGAATCCCAGCAGTTCAAAAATTAGTTGAATCA
TTAACTGGTAAAAAGCCTAATCAGTCTGTCAACCCAGATGAAGTTGTTGC
AATTGGAGCTGCAATTCAAGCAGGTATTTTAGCGGGTGAAATTAAAGATA
TTTTACTATTAGATGTAACTCCATTATCTTTAGGTGTTGAAACACTTGGT
GGTGTAATGACAAAAATTATTGCTCGAAATACAACAATCCCTGTTAAAAA
ATCTGAAACCTTTTCAACAGCGGTTGAAAATCAAACAAATGTAGAAATTC
ATATTTTACAAGGTGAACGAGAATTAGTTTCGGGAAATAAAAGTCTAGGA
AACTTTAGATTAGATGGAATTCCACCTGCTGATCGTGGCGTTCCTCAAAT
TGAAGTTACATTTGATATTGATGTTGATGGTATTCTATCAGTAAAAGCAA
GAGAAAAAGAAACAGGTGTTGAACAATCGGTAACAATTCAAGGGGCATCA
AATTTAAACGAAGCAGAAGTTGAGGGAATGTTAGAAGAAGCAGAAAAATT
TGCTTCAGCTGATAAAGAAAAACGTCAAACCATTGATCTAAAAAATCAAG
CTGAAGCATTATGTTTCGAAGCTGAAAAAGAACTTTCTCTTTTAGAAGAT
ACGGGCTCAGAGGAGACGAAACAAAAGGTTACAAAATTAATTGAAACTAT
TCGCCAAGAAATTCAAGTTGATAATTTTGAAAATTTAAAATTACAAGTTG
AAGAATTAAAAACTGAAATGAAAAATATGGTAGAAGCAAAAATGAATAGT
GAATCAAATTCAGACCCAATGTCGAATTTAAATGATTTATAA
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protein sequence of Gvermi2172.t2

>Gvermi2172.t2 ID=Gvermi2172.t2|Name=Gvermi2172.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=614bp
MTKVVGIDLGTTNSVVAAIEGGQPSVIINAEGLRTTPSIVAYTKKQELLV
GQIAKRQAVINPANTFFSVKRFIGSKEGEIAEESKKLPYKVSKDENDNIK
IKCPALNKDFSPEELSAQILRKLINDATDYLGQEVTQAVITVPAYFNDSQ
RQATMDAGKIAGIEVLRIINEPTAASLAYGLDKKQNETILVFDLGGGTFD
VSILEVGDGIFEVLSTAGDTTLGGDDFDNLLVKWLMNDFKEKEGIDLSSD
IQALQRLTEAAEKAKIELSTVEKTTIHLPFITADKTGPKHIEKELTRDIF
EKLCQELINRCRIPVEKSLNDARLDKSDINEIVLVGGSTRIPAVQKLVES
LTGKKPNQSVNPDEVVAIGAAIQAGILAGEIKDILLLDVTPLSLGVETLG
GVMTKIIARNTTIPVKKSETFSTAVENQTNVEIHILQGERELVSGNKSLG
NFRLDGIPPADRGVPQIEVTFDIDVDGILSVKAREKETGVEQSVTIQGAS
NLNEAEVEGMLEEAEKFASADKEKRQTIDLKNQAEALCFEAEKELSLLED
TGSEETKQKVTKLIETIRQEIQVDNFENLKLQVEELKTEMKNMVEAKMNS
ESNSDPMSNLNDL*
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mRNA from alignment at ScGOVlb_52:46664..48505-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2172.t2 ID=Gvermi2172.t2|Name=Gvermi2172.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1842bp|location=Sequence derived from alignment at ScGOVlb_52:46664..48505- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACAAAAGTTGTAGGAATCGATTTAGGTACGACAAATTCTGTAGTTGC
TGCAATTGAAGGTGGTCAACCTAGTGTAATTATAAATGCTGAAGGATTAC
GAACAACTCCTTCTATTGTTGCATATACCAAAAAACAAGAGTTACTAGTA
GGTCAAATTGCTAAACGCCAAGCGGTAATTAATCCAGCCAATACTTTTTT
TTCTGTCAAACGATTTATTGGATCAAAAGAAGGAGAAATTGCGGAAGAAT
CAAAAAAATTACCTTATAAGGTAAGTAAAGATGAAAATGATAATATTAAA
ATTAAATGTCCAGCATTAAATAAAGATTTTAGTCCAGAAGAACTTTCTGC
ACAAATTTTAAGAAAATTAATTAACGATGCAACAGATTATTTAGGACAAG
AAGTAACACAAGCAGTTATTACTGTACCAGCTTATTTTAATGATTCACAA
AGACAAGCAACAATGGATGCTGGAAAAATTGCCGGTATTGAAGTGTTACG
TATTATTAATGAACCAACAGCTGCTTCATTAGCTTATGGTTTAGATAAAA
AACAAAATGAAACTATATTAGTTTTTGATTTAGGTGGGGGAACATTTGAT
GTTTCAATTTTAGAAGTTGGTGATGGTATTTTTGAGGTTTTATCAACAGC
TGGAGATACAACATTAGGTGGTGATGACTTTGATAATCTTCTTGTTAAGT
GGTTAATGAATGATTTCAAAGAAAAAGAAGGAATTGATTTAAGTAGTGAT
ATTCAAGCTTTACAACGTCTAACAGAAGCTGCTGAAAAAGCAAAAATTGA
ATTATCAACTGTTGAAAAAACGACTATTCATTTACCTTTTATTACGGCAG
ATAAGACAGGTCCAAAACATATTGAAAAAGAATTAACTCGAGATATTTTT
GAGAAGCTATGTCAAGAATTAATTAACCGTTGCCGAATTCCTGTTGAGAA
ATCATTAAATGATGCTAGGCTTGATAAATCGGATATTAATGAAATTGTTT
TAGTTGGTGGTTCAACACGAATCCCAGCAGTTCAAAAATTAGTTGAATCA
TTAACTGGTAAAAAGCCTAATCAGTCTGTCAACCCAGATGAAGTTGTTGC
AATTGGAGCTGCAATTCAAGCAGGTATTTTAGCGGGTGAAATTAAAGATA
TTTTACTATTAGATGTAACTCCATTATCTTTAGGTGTTGAAACACTTGGT
GGTGTAATGACAAAAATTATTGCTCGAAATACAACAATCCCTGTTAAAAA
ATCTGAAACCTTTTCAACAGCGGTTGAAAATCAAACAAATGTAGAAATTC
ATATTTTACAAGGTGAACGAGAATTAGTTTCGGGAAATAAAAGTCTAGGA
AACTTTAGATTAGATGGAATTCCACCTGCTGATCGTGGCGTTCCTCAAAT
TGAAGTTACATTTGATATTGATGTTGATGGTATTCTATCAGTAAAAGCAA
GAGAAAAAGAAACAGGTGTTGAACAATCGGTAACAATTCAAGGGGCATCA
AATTTAAACGAAGCAGAAGTTGAGGGAATGTTAGAAGAAGCAGAAAAATT
TGCTTCAGCTGATAAAGAAAAACGTCAAACCATTGATCTAAAAAATCAAG
CTGAAGCATTATGTTTCGAAGCTGAAAAAGAACTTTCTCTTTTAGAAGAT
ACGGGCTCAGAGGAGACGAAACAAAAGGTTACAAAATTAATTGAAACTAT
TCGCCAAGAAATTCAAGTTGATAATTTTGAAAATTTAAAATTACAAGTTG
AAGAATTAAAAACTGAAATGAAAAATATGGTAGAAGCAAAAATGAATAGT
GAATCAAATTCAGACCCAATGTCGAATTTAAATGATTTATAA
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Coding sequence (CDS) from alignment at ScGOVlb_52:46664..48505-

>Gvermi2172.t2 ID=Gvermi2172.t2|Name=Gvermi2172.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1842bp|location=Sequence derived from alignment at ScGOVlb_52:46664..48505- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACAAAAGTTGTAGGAATCGATTTAGGTACGACAAATTCTGTAGTTGC
TGCAATTGAAGGTGGTCAACCTAGTGTAATTATAAATGCTGAAGGATTAC
GAACAACTCCTTCTATTGTTGCATATACCAAAAAACAAGAGTTACTAGTA
GGTCAAATTGCTAAACGCCAAGCGGTAATTAATCCAGCCAATACTTTTTT
TTCTGTCAAACGATTTATTGGATCAAAAGAAGGAGAAATTGCGGAAGAAT
CAAAAAAATTACCTTATAAGGTAAGTAAAGATGAAAATGATAATATTAAA
ATTAAATGTCCAGCATTAAATAAAGATTTTAGTCCAGAAGAACTTTCTGC
ACAAATTTTAAGAAAATTAATTAACGATGCAACAGATTATTTAGGACAAG
AAGTAACACAAGCAGTTATTACTGTACCAGCTTATTTTAATGATTCACAA
AGACAAGCAACAATGGATGCTGGAAAAATTGCCGGTATTGAAGTGTTACG
TATTATTAATGAACCAACAGCTGCTTCATTAGCTTATGGTTTAGATAAAA
AACAAAATGAAACTATATTAGTTTTTGATTTAGGTGGGGGAACATTTGAT
GTTTCAATTTTAGAAGTTGGTGATGGTATTTTTGAGGTTTTATCAACAGC
TGGAGATACAACATTAGGTGGTGATGACTTTGATAATCTTCTTGTTAAGT
GGTTAATGAATGATTTCAAAGAAAAAGAAGGAATTGATTTAAGTAGTGAT
ATTCAAGCTTTACAACGTCTAACAGAAGCTGCTGAAAAAGCAAAAATTGA
ATTATCAACTGTTGAAAAAACGACTATTCATTTACCTTTTATTACGGCAG
ATAAGACAGGTCCAAAACATATTGAAAAAGAATTAACTCGAGATATTTTT
GAGAAGCTATGTCAAGAATTAATTAACCGTTGCCGAATTCCTGTTGAGAA
ATCATTAAATGATGCTAGGCTTGATAAATCGGATATTAATGAAATTGTTT
TAGTTGGTGGTTCAACACGAATCCCAGCAGTTCAAAAATTAGTTGAATCA
TTAACTGGTAAAAAGCCTAATCAGTCTGTCAACCCAGATGAAGTTGTTGC
AATTGGAGCTGCAATTCAAGCAGGTATTTTAGCGGGTGAAATTAAAGATA
TTTTACTATTAGATGTAACTCCATTATCTTTAGGTGTTGAAACACTTGGT
GGTGTAATGACAAAAATTATTGCTCGAAATACAACAATCCCTGTTAAAAA
ATCTGAAACCTTTTCAACAGCGGTTGAAAATCAAACAAATGTAGAAATTC
ATATTTTACAAGGTGAACGAGAATTAGTTTCGGGAAATAAAAGTCTAGGA
AACTTTAGATTAGATGGAATTCCACCTGCTGATCGTGGCGTTCCTCAAAT
TGAAGTTACATTTGATATTGATGTTGATGGTATTCTATCAGTAAAAGCAA
GAGAAAAAGAAACAGGTGTTGAACAATCGGTAACAATTCAAGGGGCATCA
AATTTAAACGAAGCAGAAGTTGAGGGAATGTTAGAAGAAGCAGAAAAATT
TGCTTCAGCTGATAAAGAAAAACGTCAAACCATTGATCTAAAAAATCAAG
CTGAAGCATTATGTTTCGAAGCTGAAAAAGAACTTTCTCTTTTAGAAGAT
ACGGGCTCAGAGGAGACGAAACAAAAGGTTACAAAATTAATTGAAACTAT
TCGCCAAGAAATTCAAGTTGATAATTTTGAAAATTTAAAATTACAAGTTG
AAGAATTAAAAACTGAAATGAAAAATATGGTAGAAGCAAAAATGAATAGT
GAATCAAATTCAGACCCAATGTCGAATTTAAATGATTTATAA
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