Gvermi12759.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12759.t1
Unique NameGvermi12759.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length361
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1397305..1398387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7234.FBpp0174925
Preferred nameSPON1
PFAMsKunitz_BPTI,Reeler,Spond_N,TSP_1
Max annot lvl33208|Metazoa
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005576,GO:0005604,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0006928,GO:0006935,GO:0007155,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007413,GO:0007517,GO:0008037,GO:0008038,GO:0008045,GO:0008150,GO:0009605,GO:0009653,GO:0009987,GO:0012505,GO:0016043,GO:0016203,GO:0022008,GO:0022610,GO:0030016,GO:0030017,GO:0030030,GO:0030154,GO:0030182,GO:0031012,GO:0031175,GO:0031430,GO:0031672,GO:0031974,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0033563,GO:0033627,GO:0040011,GO:0042221,GO:0042330,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0044421,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0048468,GO:0048513,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050896,GO:0055120,GO:0060538,GO:0061061,GO:0061564,GO:0062023,GO:0070013,GO:0071840,GO:0097485,GO:0099080,GO:0099081,GO:0099512,GO:0106030,GO:0120036,GO:0120039
Evalue2.7e-12
EggNOG OGsKOG3539@1|root,KOG3539@2759|Eukaryota,38FW7@33154|Opisthokonta,3BEQ3@33208|Metazoa,3CYKJ@33213|Bilateria,41TS9@6656|Arthropoda,3SKHS@50557|Insecta,44Z5J@7147|Diptera,45X7E@7214|Drosophilidae
DescriptionSerine-type endopeptidase inhibitor activity
COG categoryW
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12759Gvermi12759Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1397305..1398387 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12759.t1.stop1Gvermi12759.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1397305..1397307 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12759.t1.CDS1Gvermi12759.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1397305..1398387 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12759.t1.exon1Gvermi12759.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1397305..1398387 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12759.t1.start1Gvermi12759.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1398385..1398387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12759.t1Gvermi12759.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1397305..1398387 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12759.t1 ID=Gvermi12759.t1|Name=Gvermi12759.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=361bp
LLQCTLSHPCEGIQSYLVTFEYNWSPETDVSFPTGDNTIAPGFSPLLCAS
HSPDYVLWEQNSVISPAVRTLLTNVSNERIEDELEQAKRQKKVLQYLSVS
KENTTADSAAFLVISVDASCNFTRISCIAKVIPSPDWFIGLPSIDMCRNG
SFRQKREGKLFGWDGGIDNSEAYDESLPLPTSEAVPVLPAFLASPDGFGD
AIIKQTQVPIPSPSATEPGTDGNDKSRTPNAFVPDQVASFTGVTQVQQET
VCIDATALRHFPANALLYAEHRLARVLCDPYASCATPGHMVSFRGVPMMM
KSYCHLTSCTQKLTYVNSPRYSPALRIPSKSPHLQFTALAARFATAIEEY
IMSTALRIGL*
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spliced messenger RNA

>Gvermi12759.t1 ID=Gvermi12759.t1|Name=Gvermi12759.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at ScGOVlb_425:1397305..1398387- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCTCCAATGCACACTTTCACACCCTTGTGAGGGTATCCAGTCCTACCT
CGTCACCTTCGAGTACAATTGGTCCCCCGAGACTGACGTTTCCTTCCCCA
CCGGTGACAACACCATAGCTCCCGGCTTCTCTCCGCTCTTGTGCGCTAGC
CACAGCCCTGACTACGTTCTGTGGGAGCAAAACTCCGTCATCAGCCCAGC
CGTCCGCACTCTGCTCACCAACGTGTCCAACGAACGCATCGAGGATGAGC
TCGAGCAGGCAAAGCGACAGAAAAAGGTCCTTCAGTACCTCTCCGTCAGC
AAGGAAAACACCACCGCCGACTCTGCCGCCTTTCTAGTCATATCCGTCGA
CGCATCGTGTAACTTTACCCGCATTAGCTGCATTGCCAAGGTCATCCCTT
CTCCCGACTGGTTCATAGGCCTCCCGAGCATTGACATGTGCAGAAACGGT
TCATTCAGACAGAAGCGAGAAGGCAAGCTCTTTGGCTGGGATGGCGGTAT
TGATAACTCTGAGGCTTACGACGAATCCCTTCCACTACCCACATCAGAGG
CTGTCCCGGTTCTGCCAGCCTTTCTTGCTTCCCCGGACGGCTTTGGCGAC
GCCATAATCAAACAGACCCAAGTTCCCATCCCCTCTCCGTCCGCTACAGA
ACCGGGAACCGACGGCAACGACAAGTCGCGAACCCCGAACGCTTTTGTCC
CAGATCAAGTTGCAAGTTTCACCGGTGTCACACAAGTGCAGCAAGAAACG
GTATGCATTGACGCCACCGCCCTCCGCCATTTCCCCGCCAACGCACTCCT
CTATGCCGAACACCGTTTGGCTCGCGTCCTGTGCGACCCGTACGCCAGCT
GTGCCACACCTGGCCATATGGTATCCTTTCGAGGCGTCCCTATGATGATG
AAGTCCTATTGTCACCTTACTAGCTGCACACAAAAATTAACATATGTTAA
CAGCCCGCGATACTCACCAGCGCTGCGAATTCCATCCAAGTCTCCACATC
TTCAATTCACAGCACTTGCTGCCAGATTTGCAACCGCTATCGAGGAATAT
ATCATGTCCACTGCGCTGCGAATTGGACTGTAA
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protein sequence of Gvermi12759.t1

>Gvermi12759.t1 ID=Gvermi12759.t1|Name=Gvermi12759.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=361bp
LLQCTLSHPCEGIQSYLVTFEYNWSPETDVSFPTGDNTIAPGFSPLLCAS
HSPDYVLWEQNSVISPAVRTLLTNVSNERIEDELEQAKRQKKVLQYLSVS
KENTTADSAAFLVISVDASCNFTRISCIAKVIPSPDWFIGLPSIDMCRNG
SFRQKREGKLFGWDGGIDNSEAYDESLPLPTSEAVPVLPAFLASPDGFGD
AIIKQTQVPIPSPSATEPGTDGNDKSRTPNAFVPDQVASFTGVTQVQQET
VCIDATALRHFPANALLYAEHRLARVLCDPYASCATPGHMVSFRGVPMMM
KSYCHLTSCTQKLTYVNSPRYSPALRIPSKSPHLQFTALAARFATAIEEY
IMSTALRIGL*
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mRNA from alignment at ScGOVlb_425:1397305..1398387-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12759.t1 ID=Gvermi12759.t1|Name=Gvermi12759.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at ScGOVlb_425:1397305..1398387- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCTCCAATGCACACTTTCACACCCTTGTGAGGGTATCCAGTCCTACCT
CGTCACCTTCGAGTACAATTGGTCCCCCGAGACTGACGTTTCCTTCCCCA
CCGGTGACAACACCATAGCTCCCGGCTTCTCTCCGCTCTTGTGCGCTAGC
CACAGCCCTGACTACGTTCTGTGGGAGCAAAACTCCGTCATCAGCCCAGC
CGTCCGCACTCTGCTCACCAACGTGTCCAACGAACGCATCGAGGATGAGC
TCGAGCAGGCAAAGCGACAGAAAAAGGTCCTTCAGTACCTCTCCGTCAGC
AAGGAAAACACCACCGCCGACTCTGCCGCCTTTCTAGTCATATCCGTCGA
CGCATCGTGTAACTTTACCCGCATTAGCTGCATTGCCAAGGTCATCCCTT
CTCCCGACTGGTTCATAGGCCTCCCGAGCATTGACATGTGCAGAAACGGT
TCATTCAGACAGAAGCGAGAAGGCAAGCTCTTTGGCTGGGATGGCGGTAT
TGATAACTCTGAGGCTTACGACGAATCCCTTCCACTACCCACATCAGAGG
CTGTCCCGGTTCTGCCAGCCTTTCTTGCTTCCCCGGACGGCTTTGGCGAC
GCCATAATCAAACAGACCCAAGTTCCCATCCCCTCTCCGTCCGCTACAGA
ACCGGGAACCGACGGCAACGACAAGTCGCGAACCCCGAACGCTTTTGTCC
CAGATCAAGTTGCAAGTTTCACCGGTGTCACACAAGTGCAGCAAGAAACG
GTATGCATTGACGCCACCGCCCTCCGCCATTTCCCCGCCAACGCACTCCT
CTATGCCGAACACCGTTTGGCTCGCGTCCTGTGCGACCCGTACGCCAGCT
GTGCCACACCTGGCCATATGGTATCCTTTCGAGGCGTCCCTATGATGATG
AAGTCCTATTGTCACCTTACTAGCTGCACACAAAAATTAACATATGTTAA
CAGCCCGCGATACTCACCAGCGCTGCGAATTCCATCCAAGTCTCCACATC
TTCAATTCACAGCACTTGCTGCCAGATTTGCAACCGCTATCGAGGAATAT
ATCATGTCCACTGCGCTGCGAATTGGACTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1397305..1398387-

>Gvermi12759.t1 ID=Gvermi12759.t1|Name=Gvermi12759.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1083bp|location=Sequence derived from alignment at ScGOVlb_425:1397305..1398387- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCTCCAATGCACACTTTCACACCCTTGTGAGGGTATCCAGTCCTACCT
CGTCACCTTCGAGTACAATTGGTCCCCCGAGACTGACGTTTCCTTCCCCA
CCGGTGACAACACCATAGCTCCCGGCTTCTCTCCGCTCTTGTGCGCTAGC
CACAGCCCTGACTACGTTCTGTGGGAGCAAAACTCCGTCATCAGCCCAGC
CGTCCGCACTCTGCTCACCAACGTGTCCAACGAACGCATCGAGGATGAGC
TCGAGCAGGCAAAGCGACAGAAAAAGGTCCTTCAGTACCTCTCCGTCAGC
AAGGAAAACACCACCGCCGACTCTGCCGCCTTTCTAGTCATATCCGTCGA
CGCATCGTGTAACTTTACCCGCATTAGCTGCATTGCCAAGGTCATCCCTT
CTCCCGACTGGTTCATAGGCCTCCCGAGCATTGACATGTGCAGAAACGGT
TCATTCAGACAGAAGCGAGAAGGCAAGCTCTTTGGCTGGGATGGCGGTAT
TGATAACTCTGAGGCTTACGACGAATCCCTTCCACTACCCACATCAGAGG
CTGTCCCGGTTCTGCCAGCCTTTCTTGCTTCCCCGGACGGCTTTGGCGAC
GCCATAATCAAACAGACCCAAGTTCCCATCCCCTCTCCGTCCGCTACAGA
ACCGGGAACCGACGGCAACGACAAGTCGCGAACCCCGAACGCTTTTGTCC
CAGATCAAGTTGCAAGTTTCACCGGTGTCACACAAGTGCAGCAAGAAACG
GTATGCATTGACGCCACCGCCCTCCGCCATTTCCCCGCCAACGCACTCCT
CTATGCCGAACACCGTTTGGCTCGCGTCCTGTGCGACCCGTACGCCAGCT
GTGCCACACCTGGCCATATGGTATCCTTTCGAGGCGTCCCTATGATGATG
AAGTCCTATTGTCACCTTACTAGCTGCACACAAAAATTAACATATGTTAA
CAGCCCGCGATACTCACCAGCGCTGCGAATTCCATCCAAGTCTCCACATC
TTCAATTCACAGCACTTGCTGCCAGATTTGCAACCGCTATCGAGGAATAT
ATCATGTCCACTGCGCTGCGAATTGGACTGTAA
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