Gvermi12915.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12915.t1
Unique NameGvermi12915.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length199
Homology
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BLAST of Gvermi12915.t1 vs. uniprot
Match: A0A2V3J1F4_9FLOR (DNA-directed RNA polymerase I subunit RPA43 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1F4_9FLOR)

HSP 1 Score: 231 bits (589), Expect = 3.840e-69
Identity = 107/162 (66.05%), Postives = 128/162 (79.01%), Query Frame = 0 
Query:    1 MPSPTLGTTWRLLEARVHLALSPTQLLDPATSATQAAFEKLLMRYNHSLKGVVVANVGPLKLLTKPTFIDASPFAHVVGRISLLLFNPPAGSVLVGVINYIGPDHIALRVFRTFHAVLPLHDVANMFQFDASYPKKWTRYDEHAAPENDLTLGRQVRFVVQE 162
            MPSP L   WR +EARVH++LSP+QL DP  SAT  AF+ LLMRYN SLKGVVVA++ PLKLL  PTFIDASPFAHV  R  LL+FNPP GSVLVGV+ ++GPDH+ L VFR FHAVLPLH VANMFQ+D ++P+KW R D+ A+P  D+  G+Q+RFVV E
Sbjct:    1 MPSPPLSAVWRQVEARVHISLSPSQLSDPLASATHVAFDNLLMRYNQSLKGVVVAHIAPLKLLGHPTFIDASPFAHVAARAKLLVFNPPPGSVLVGVVKHVGPDHLGLTVFRNFHAVLPLHSVANMFQYDGNHPRKWRRSDQLASPSRDVIAGKQIRFVVHE 162
The following BLAST results are available for this feature:
BLAST of Gvermi12915.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J1F4_9FLOR3.840e-6966.05DNA-directed RNA polymerase I subunit RPA43 n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 160..162
NoneNo IPR availableGENE3D2.40.50.1060coord: 92..167
e-value: 4.5E-5
score: 25.7
NoneNo IPR availablePANTHERPTHR12709:SF5DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA43coord: 12..161
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilyGENE3D3.30.1490.120coord: 3..91
e-value: 1.6E-8
score: 36.3
IPR045113RNA polymerase subunit Rpb7-likePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 12..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2074112..2074708 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12915.t1Gvermi12915.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 2074112..2074708 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12915.t1 ID=Gvermi12915.t1|Name=Gvermi12915.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=199bp
MPSPTLGTTWRLLEARVHLALSPTQLLDPATSATQAAFEKLLMRYNHSLK
GVVVANVGPLKLLTKPTFIDASPFAHVVGRISLLLFNPPAGSVLVGVINY
IGPDHIALRVFRTFHAVLPLHDVANMFQFDASYPKKWTRYDEHAAPENDL
TLGRQVRFVVQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036898RNA_pol_Rpb7-like_N_sf
IPR045113Rpb7-like