Gvermi12935.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12935.t1
Unique NameGvermi12935.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length449
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2229872..2231218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706240.1
Preferred nameUSP46
PFAMsUCH
Max annot lvl2759|Eukaryota
KEGG koko:K11842,ko:K11872
GOsGO:0000578,GO:0001662,GO:0002209,GO:0002682,GO:0002684,GO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004843,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0007154,GO:0007275,GO:0007350,GO:0007351,GO:0007389,GO:0007584,GO:0007610,GO:0007631,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008343,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009605,GO:0009636,GO:0009790,GO:0009798,GO:0009880,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010469,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010992,GO:0010995,GO:0012505,GO:0016043,GO:0016192,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019783,GO:0019941,GO:0022411,GO:0022898,GO:0023051,GO:0023056,GO:0023057,GO:0030163,GO:0030534,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0031982,GO:0032228,GO:0032409,GO:0032412,GO:0032501,GO:0032502,GO:0032879,GO:0032984,GO:0033555,GO:0034762,GO:0034765,GO:0035254,GO:0035255,GO:0035282,GO:0035871,GO:0036211,GO:0036459,GO:0036477,GO:0040012,GO:0040017,GO:0042221,GO:0042493,GO:0042592,GO:0042596,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043269,GO:0043412,GO:0043624,GO:0043632,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045013,GO:0045471,GO:0045746,GO:0045892,GO:0045934,GO:0045990,GO:0046677,GO:0048149,GO:0048518,GO:0048519,GO:0048520,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050795,GO:0050804,GO:0050854,GO:0050856,GO:0050857,GO:0050862,GO:0050896,GO:0051049,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051261,GO:0051603,GO:0051716,GO:0060004,GO:0060013,GO:0060255,GO:0061984,GO:0061985,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0070887,GO:0071108,GO:0071496,GO:0071704,GO:0071840,GO:0071947,GO:0080090,GO:0090325,GO:0090326,GO:0097305,GO:0097458,GO:0097708,GO:0098657,GO:0099177,GO:0099601,GO:0101005,GO:0140096,GO:1900449,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1902679,GO:1903506,GO:1903507,GO:1904062,GO:2000112,GO:2000113,GO:2000311,GO:2001141,GO:2001257
Evalue2.45e-156
EggNOG OGsKOG1864@1|root,KOG1864@2759|Eukaryota
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12935Gvermi12935Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2229872..2231218 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12935.t1.start1Gvermi12935.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2229872..2229874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12935.t1.CDS1Gvermi12935.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2229872..2231218 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12935.t1.exon1Gvermi12935.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2229872..2231218 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12935.t1.stop1Gvermi12935.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2231216..2231218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12935.t1Gvermi12935.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2229872..2231218 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12935.t1 ID=Gvermi12935.t1|Name=Gvermi12935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=449bp
MGSAISTGNKLEKALDANLPEDERYFGLENFGNTCYCNSVLQALYFCEPF
RKAVLNYTSNRRIAKAQPIDPRANSSLLSAAPSLLPKATNSSLMGNSVSN
ASRTTEANSAAEYGPSTSANFLDSSENGAEETMLTALGDLFMQIATQKKR
TGSVPPKTFVNKLRQENELFSSYMHQDAHEFLNFILNEVVECLHRENSAK
SQREQNHPSKDPYSNYLTNVNGKLQNGSVIPISEEKVLQGKGNSKTFVHE
LFEGHLSNEVRCLCCETVTQRVESFFDLSVDVEQNSSLTSCLRNFSSTEL
LEKQDKFFCDACCSLQEAERRMRIKQLPKILALHLKRFKYVEPLGKYKKL
NYRVVFPLELRLCNTSDDAEDPDRLYSLFAVVVHVGSGPNQGHYVSLIKS
HRQWLMFDDDAVEPKDEGEIQSVYGVTQENAQSTEAGYILFYEQISAS*
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spliced messenger RNA

>Gvermi12935.t1 ID=Gvermi12935.t1|Name=Gvermi12935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at ScGOVlb_425:2229872..2231218+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTCAGCCATCTCCACGGGCAATAAACTGGAGAAGGCTTTAGATGC
CAACCTCCCCGAGGATGAACGATACTTTGGCCTGGAGAACTTTGGCAACA
CCTGTTACTGCAACTCCGTTCTTCAGGCACTTTACTTCTGCGAACCGTTT
CGAAAGGCGGTTCTGAACTACACAAGCAATCGCAGGATCGCTAAGGCGCA
ACCGATTGACCCCAGAGCGAACTCCAGTTTGCTTTCCGCCGCCCCCTCGC
TGCTGCCCAAGGCTACAAACTCCTCCCTGATGGGCAACTCTGTTTCAAAC
GCTTCGCGAACGACAGAAGCCAACTCGGCGGCTGAATACGGCCCCTCGAC
GAGTGCCAACTTTCTCGACTCGAGCGAAAATGGCGCTGAAGAAACAATGC
TCACTGCTCTTGGCGACTTGTTCATGCAGATTGCCACGCAGAAAAAACGC
ACCGGTTCTGTACCTCCCAAAACCTTTGTGAACAAACTACGCCAGGAGAA
CGAGCTTTTCTCCAGCTACATGCACCAGGATGCCCATGAATTCCTCAACT
TTATTCTCAATGAAGTTGTCGAGTGTTTGCACAGGGAGAACTCTGCGAAG
AGCCAACGCGAGCAGAATCATCCCTCGAAGGACCCTTACTCAAATTACCT
AACAAACGTCAATGGAAAGCTACAAAACGGCTCTGTCATCCCGATTTCCG
AAGAGAAAGTTTTGCAAGGAAAGGGAAACTCCAAGACTTTTGTACATGAG
TTATTCGAGGGCCATCTTTCCAACGAAGTTAGATGTCTGTGCTGCGAAAC
CGTCACGCAGAGAGTAGAATCATTCTTTGATTTGAGTGTTGATGTGGAAC
AGAACTCGTCGCTCACTTCATGCCTTCGTAATTTCTCCTCGACAGAGTTG
CTTGAAAAGCAGGACAAGTTTTTCTGCGACGCGTGTTGTTCACTTCAGGA
GGCAGAGCGACGTATGAGAATCAAACAATTACCCAAGATTCTTGCACTGC
ATCTGAAACGTTTCAAATACGTCGAGCCGTTGGGCAAATACAAGAAGCTT
AATTATCGAGTCGTATTTCCGCTCGAACTGCGTCTTTGTAACACTAGTGA
TGACGCCGAGGATCCTGATCGTTTGTATTCTTTATTTGCGGTAGTAGTTC
ATGTTGGATCGGGTCCGAACCAAGGTCATTATGTATCTCTCATCAAGTCA
CATAGGCAATGGTTAATGTTCGATGACGATGCAGTAGAACCGAAGGACGA
AGGCGAAATTCAAAGCGTGTACGGTGTGACTCAGGAGAACGCACAGAGCA
CAGAGGCAGGATACATTTTGTTCTACGAACAAATCAGTGCCTCTTAA
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protein sequence of Gvermi12935.t1

>Gvermi12935.t1 ID=Gvermi12935.t1|Name=Gvermi12935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=449bp
MGSAISTGNKLEKALDANLPEDERYFGLENFGNTCYCNSVLQALYFCEPF
RKAVLNYTSNRRIAKAQPIDPRANSSLLSAAPSLLPKATNSSLMGNSVSN
ASRTTEANSAAEYGPSTSANFLDSSENGAEETMLTALGDLFMQIATQKKR
TGSVPPKTFVNKLRQENELFSSYMHQDAHEFLNFILNEVVECLHRENSAK
SQREQNHPSKDPYSNYLTNVNGKLQNGSVIPISEEKVLQGKGNSKTFVHE
LFEGHLSNEVRCLCCETVTQRVESFFDLSVDVEQNSSLTSCLRNFSSTEL
LEKQDKFFCDACCSLQEAERRMRIKQLPKILALHLKRFKYVEPLGKYKKL
NYRVVFPLELRLCNTSDDAEDPDRLYSLFAVVVHVGSGPNQGHYVSLIKS
HRQWLMFDDDAVEPKDEGEIQSVYGVTQENAQSTEAGYILFYEQISAS*
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mRNA from alignment at ScGOVlb_425:2229872..2231218+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12935.t1 ID=Gvermi12935.t1|Name=Gvermi12935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at ScGOVlb_425:2229872..2231218+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTTCAGCCATCTCCACGGGCAATAAACTGGAGAAGGCTTTAGATGC
CAACCTCCCCGAGGATGAACGATACTTTGGCCTGGAGAACTTTGGCAACA
CCTGTTACTGCAACTCCGTTCTTCAGGCACTTTACTTCTGCGAACCGTTT
CGAAAGGCGGTTCTGAACTACACAAGCAATCGCAGGATCGCTAAGGCGCA
ACCGATTGACCCCAGAGCGAACTCCAGTTTGCTTTCCGCCGCCCCCTCGC
TGCTGCCCAAGGCTACAAACTCCTCCCTGATGGGCAACTCTGTTTCAAAC
GCTTCGCGAACGACAGAAGCCAACTCGGCGGCTGAATACGGCCCCTCGAC
GAGTGCCAACTTTCTCGACTCGAGCGAAAATGGCGCTGAAGAAACAATGC
TCACTGCTCTTGGCGACTTGTTCATGCAGATTGCCACGCAGAAAAAACGC
ACCGGTTCTGTACCTCCCAAAACCTTTGTGAACAAACTACGCCAGGAGAA
CGAGCTTTTCTCCAGCTACATGCACCAGGATGCCCATGAATTCCTCAACT
TTATTCTCAATGAAGTTGTCGAGTGTTTGCACAGGGAGAACTCTGCGAAG
AGCCAACGCGAGCAGAATCATCCCTCGAAGGACCCTTACTCAAATTACCT
AACAAACGTCAATGGAAAGCTACAAAACGGCTCTGTCATCCCGATTTCCG
AAGAGAAAGTTTTGCAAGGAAAGGGAAACTCCAAGACTTTTGTACATGAG
TTATTCGAGGGCCATCTTTCCAACGAAGTTAGATGTCTGTGCTGCGAAAC
CGTCACGCAGAGAGTAGAATCATTCTTTGATTTGAGTGTTGATGTGGAAC
AGAACTCGTCGCTCACTTCATGCCTTCGTAATTTCTCCTCGACAGAGTTG
CTTGAAAAGCAGGACAAGTTTTTCTGCGACGCGTGTTGTTCACTTCAGGA
GGCAGAGCGACGTATGAGAATCAAACAATTACCCAAGATTCTTGCACTGC
ATCTGAAACGTTTCAAATACGTCGAGCCGTTGGGCAAATACAAGAAGCTT
AATTATCGAGTCGTATTTCCGCTCGAACTGCGTCTTTGTAACACTAGTGA
TGACGCCGAGGATCCTGATCGTTTGTATTCTTTATTTGCGGTAGTAGTTC
ATGTTGGATCGGGTCCGAACCAAGGTCATTATGTATCTCTCATCAAGTCA
CATAGGCAATGGTTAATGTTCGATGACGATGCAGTAGAACCGAAGGACGA
AGGCGAAATTCAAAGCGTGTACGGTGTGACTCAGGAGAACGCACAGAGCA
CAGAGGCAGGATACATTTTGTTCTACGAACAAATCAGTGCCTCTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:2229872..2231218+

>Gvermi12935.t1 ID=Gvermi12935.t1|Name=Gvermi12935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1347bp|location=Sequence derived from alignment at ScGOVlb_425:2229872..2231218+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTTCAGCCATCTCCACGGGCAATAAACTGGAGAAGGCTTTAGATGC
CAACCTCCCCGAGGATGAACGATACTTTGGCCTGGAGAACTTTGGCAACA
CCTGTTACTGCAACTCCGTTCTTCAGGCACTTTACTTCTGCGAACCGTTT
CGAAAGGCGGTTCTGAACTACACAAGCAATCGCAGGATCGCTAAGGCGCA
ACCGATTGACCCCAGAGCGAACTCCAGTTTGCTTTCCGCCGCCCCCTCGC
TGCTGCCCAAGGCTACAAACTCCTCCCTGATGGGCAACTCTGTTTCAAAC
GCTTCGCGAACGACAGAAGCCAACTCGGCGGCTGAATACGGCCCCTCGAC
GAGTGCCAACTTTCTCGACTCGAGCGAAAATGGCGCTGAAGAAACAATGC
TCACTGCTCTTGGCGACTTGTTCATGCAGATTGCCACGCAGAAAAAACGC
ACCGGTTCTGTACCTCCCAAAACCTTTGTGAACAAACTACGCCAGGAGAA
CGAGCTTTTCTCCAGCTACATGCACCAGGATGCCCATGAATTCCTCAACT
TTATTCTCAATGAAGTTGTCGAGTGTTTGCACAGGGAGAACTCTGCGAAG
AGCCAACGCGAGCAGAATCATCCCTCGAAGGACCCTTACTCAAATTACCT
AACAAACGTCAATGGAAAGCTACAAAACGGCTCTGTCATCCCGATTTCCG
AAGAGAAAGTTTTGCAAGGAAAGGGAAACTCCAAGACTTTTGTACATGAG
TTATTCGAGGGCCATCTTTCCAACGAAGTTAGATGTCTGTGCTGCGAAAC
CGTCACGCAGAGAGTAGAATCATTCTTTGATTTGAGTGTTGATGTGGAAC
AGAACTCGTCGCTCACTTCATGCCTTCGTAATTTCTCCTCGACAGAGTTG
CTTGAAAAGCAGGACAAGTTTTTCTGCGACGCGTGTTGTTCACTTCAGGA
GGCAGAGCGACGTATGAGAATCAAACAATTACCCAAGATTCTTGCACTGC
ATCTGAAACGTTTCAAATACGTCGAGCCGTTGGGCAAATACAAGAAGCTT
AATTATCGAGTCGTATTTCCGCTCGAACTGCGTCTTTGTAACACTAGTGA
TGACGCCGAGGATCCTGATCGTTTGTATTCTTTATTTGCGGTAGTAGTTC
ATGTTGGATCGGGTCCGAACCAAGGTCATTATGTATCTCTCATCAAGTCA
CATAGGCAATGGTTAATGTTCGATGACGATGCAGTAGAACCGAAGGACGA
AGGCGAAATTCAAAGCGTGTACGGTGTGACTCAGGAGAACGCACAGAGCA
CAGAGGCAGGATACATTTTGTTCTACGAACAAATCAGTGCCTCTTAA
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