Gvermi12883.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12883.t1
Unique Name	Gvermi12883.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	660

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1927835..1929814 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708220.1
Preferred name	SLY1
PFAMs	Sec1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K19998
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Evalue	3.42e-95
EggNOG OGs	COG5158@1\|root,KOG1301@2759\|Eukaryota
Description	vesicle docking involved in exocytosis
COG category	U
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12883	Gvermi12883	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1927835..1929814 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12883.t1.start1	Gvermi12883.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1927835..1927837 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12883.t1.CDS1	Gvermi12883.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1927835..1929814 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12883.t1.exon1	Gvermi12883.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1927835..1929814 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12883.t1.stop1	Gvermi12883.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1929812..1929814 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12883.t1	Gvermi12883.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1927835..1929814 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1927835..1929814+
coding sequence from alignment at ScGOVlb_425:1927835..1929814+

mRNA sequence

>Gvermi12883.t1 ID=Gvermi12883.t1|Name=Gvermi12883.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=660bp
MAPKSAAVFALRRAQRLVLSRVLSVPDSLHWQVLLCDTFSHTLIDALFPP
PLLRKHGVTLHALVANSHQAIPDANALYIIAPTAENIAYVAQHLAAPALF
DTARLAFVSSASSAVIAALAAQLPVPSPITFCADLYSHFISLDRDLFTLH
IPNSYERLTAAHEEQSLNPLIDRVVSGLFSVMLTLAVLPIIRAQPGGPAE
AVAAGLDAKLRSSLALFQSSSLSNRALSFRRPLLLLLDRDIDYLSMLHHT
WTYQALVHDCLDMSFYAVNLNRIQLEKKERVTYRLDKENDEFWSANAAAP
FPDVAEAIEKALTQYRTDVDQINCKAAPDSSAESPVRTDQLASAISSLPE
LSKRKQNIDVHTNIATELLKNINRRSLDTFFELESRIFAEQPAVSSVAAQ
EYKVTILELLKGVRETSTGEKRGEGTSSDRLRLFLIYYTVFGKYLSETDM
AEFRSVLQNAGADTSLIAHLGRLNRYRHDLVNEASLTSGTMNAARLKGLM
TSVVNRGYRSFANVAQNAKKLIIEQRKSFTVASVLDIFMSEQARARNESL
ASVLEEYLLYDPKLLPSAGNIPLEQTATRFSTAENPSAARKTSHRTVFTD
AIVFIVGGGNYVEYDNCTEPIPSNSNSNSSRNVLYGTTELLTAEDFLEQL
STVAKRGAG*

spliced messenger RNA

>Gvermi12883.t1 ID=Gvermi12883.t1|Name=Gvermi12883.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at ScGOVlb_425:1927835..1929814+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGAAGTCGGCAGCCGTCTTCGCCCTGCGGCGCGCGCAGCGCCT
CGTGCTGAGCCGCGTGCTCTCGGTTCCAGACAGTTTGCATTGGCAGGTGT
TGTTATGTGATACCTTCTCACACACGCTCATCGACGCTCTTTTCCCACCT
CCATTGCTGCGCAAGCACGGCGTCACACTCCATGCGCTTGTCGCCAACTC
ACACCAGGCTATCCCTGATGCCAACGCACTCTACATCATCGCCCCGACAG
CCGAAAATATCGCTTATGTTGCCCAGCATCTCGCAGCGCCCGCCCTGTTC
GACACTGCTCGCCTGGCGTTCGTTAGCTCCGCTTCTTCTGCAGTAATTGC
TGCCCTCGCCGCTCAACTTCCTGTACCGTCTCCCATCACCTTTTGCGCCG
ACCTGTACTCGCACTTTATCAGCCTAGATCGCGATCTTTTCACGCTGCAT
ATACCTAATTCTTACGAAAGGCTTACTGCCGCTCACGAGGAACAAAGTCT
CAACCCTTTGATCGATCGCGTCGTCTCTGGCCTGTTTTCGGTCATGCTTA
CTCTCGCGGTGCTACCCATCATCCGCGCCCAGCCGGGCGGCCCCGCAGAA
GCCGTGGCTGCCGGCCTAGACGCCAAGCTGCGCTCAAGCCTTGCACTCTT
TCAGTCTTCATCGCTTTCGAATCGAGCTCTGTCCTTCCGTAGACCGCTGC
TCCTGCTTTTGGACCGTGACATCGACTATCTGTCCATGCTGCATCATACC
TGGACCTACCAAGCGCTTGTACATGATTGTCTGGATATGAGTTTTTATGC
GGTGAACCTCAACCGTATTCAGCTGGAGAAAAAGGAGCGAGTGACTTATC
GACTCGACAAAGAAAATGATGAGTTTTGGAGCGCTAATGCAGCTGCGCCG
TTTCCTGACGTTGCAGAAGCGATTGAGAAGGCCTTGACTCAGTATCGAAC
CGATGTTGACCAAATCAACTGCAAGGCAGCACCTGATTCTTCAGCCGAAT
CTCCGGTGCGCACCGATCAATTGGCAAGCGCCATTTCTTCACTGCCTGAA
CTGTCGAAACGGAAGCAAAACATCGATGTTCATACTAACATTGCAACCGA
ACTCCTAAAAAATATTAATCGCCGCTCACTTGATACCTTTTTCGAGCTTG
AGAGCCGCATTTTCGCCGAACAACCAGCTGTGTCTTCTGTTGCTGCTCAG
GAGTACAAAGTCACCATATTGGAACTGCTCAAAGGAGTGCGCGAAACGTC
TACTGGCGAAAAAAGAGGTGAGGGCACTTCATCGGATCGCCTCCGCTTGT
TTCTCATATACTATACTGTGTTCGGAAAGTATCTATCTGAGACTGACATG
GCCGAATTTCGCTCGGTGCTGCAAAATGCTGGCGCAGACACTTCTTTGAT
TGCCCACTTGGGCCGCCTCAACCGTTACAGACATGATCTTGTCAATGAAG
CCTCTTTGACCAGTGGAACCATGAATGCGGCAAGACTCAAAGGACTAATG
ACCAGTGTTGTTAATCGCGGTTATCGAAGCTTCGCAAATGTTGCTCAGAA
CGCGAAGAAGCTCATCATTGAGCAAAGGAAATCGTTTACTGTAGCCAGCG
TGCTTGATATATTCATGAGTGAGCAAGCAAGAGCAAGAAATGAGTCGCTG
GCAAGTGTTCTTGAGGAATATTTACTCTATGACCCAAAGCTGCTTCCATC
TGCCGGCAATATACCTCTTGAACAAACGGCAACGCGTTTCTCTACTGCGG
AAAATCCCTCTGCTGCAAGAAAAACTTCGCATAGAACGGTTTTTACGGAC
GCTATTGTGTTTATCGTCGGTGGTGGTAACTATGTAGAGTATGACAACTG
TACCGAACCAATACCGTCCAATTCGAATTCGAATTCTTCGAGAAACGTTT
TGTACGGCACAACAGAACTTCTAACTGCTGAAGACTTTCTAGAACAGCTA
TCTACAGTTGCCAAGCGAGGTGCGGGTTAG

protein sequence of Gvermi12883.t1

>Gvermi12883.t1 ID=Gvermi12883.t1|Name=Gvermi12883.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=660bp
MAPKSAAVFALRRAQRLVLSRVLSVPDSLHWQVLLCDTFSHTLIDALFPP
PLLRKHGVTLHALVANSHQAIPDANALYIIAPTAENIAYVAQHLAAPALF
DTARLAFVSSASSAVIAALAAQLPVPSPITFCADLYSHFISLDRDLFTLH
IPNSYERLTAAHEEQSLNPLIDRVVSGLFSVMLTLAVLPIIRAQPGGPAE
AVAAGLDAKLRSSLALFQSSSLSNRALSFRRPLLLLLDRDIDYLSMLHHT
WTYQALVHDCLDMSFYAVNLNRIQLEKKERVTYRLDKENDEFWSANAAAP
FPDVAEAIEKALTQYRTDVDQINCKAAPDSSAESPVRTDQLASAISSLPE
LSKRKQNIDVHTNIATELLKNINRRSLDTFFELESRIFAEQPAVSSVAAQ
EYKVTILELLKGVRETSTGEKRGEGTSSDRLRLFLIYYTVFGKYLSETDM
AEFRSVLQNAGADTSLIAHLGRLNRYRHDLVNEASLTSGTMNAARLKGLM
TSVVNRGYRSFANVAQNAKKLIIEQRKSFTVASVLDIFMSEQARARNESL
ASVLEEYLLYDPKLLPSAGNIPLEQTATRFSTAENPSAARKTSHRTVFTD
AIVFIVGGGNYVEYDNCTEPIPSNSNSNSSRNVLYGTTELLTAEDFLEQL
STVAKRGAG*

mRNA from alignment at ScGOVlb_425:1927835..1929814+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12883.t1 ID=Gvermi12883.t1|Name=Gvermi12883.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at ScGOVlb_425:1927835..1929814+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCGAAGTCGGCAGCCGTCTTCGCCCTGCGGCGCGCGCAGCGCCT
CGTGCTGAGCCGCGTGCTCTCGGTTCCAGACAGTTTGCATTGGCAGGTGT
TGTTATGTGATACCTTCTCACACACGCTCATCGACGCTCTTTTCCCACCT
CCATTGCTGCGCAAGCACGGCGTCACACTCCATGCGCTTGTCGCCAACTC
ACACCAGGCTATCCCTGATGCCAACGCACTCTACATCATCGCCCCGACAG
CCGAAAATATCGCTTATGTTGCCCAGCATCTCGCAGCGCCCGCCCTGTTC
GACACTGCTCGCCTGGCGTTCGTTAGCTCCGCTTCTTCTGCAGTAATTGC
TGCCCTCGCCGCTCAACTTCCTGTACCGTCTCCCATCACCTTTTGCGCCG
ACCTGTACTCGCACTTTATCAGCCTAGATCGCGATCTTTTCACGCTGCAT
ATACCTAATTCTTACGAAAGGCTTACTGCCGCTCACGAGGAACAAAGTCT
CAACCCTTTGATCGATCGCGTCGTCTCTGGCCTGTTTTCGGTCATGCTTA
CTCTCGCGGTGCTACCCATCATCCGCGCCCAGCCGGGCGGCCCCGCAGAA
GCCGTGGCTGCCGGCCTAGACGCCAAGCTGCGCTCAAGCCTTGCACTCTT
TCAGTCTTCATCGCTTTCGAATCGAGCTCTGTCCTTCCGTAGACCGCTGC
TCCTGCTTTTGGACCGTGACATCGACTATCTGTCCATGCTGCATCATACC
TGGACCTACCAAGCGCTTGTACATGATTGTCTGGATATGAGTTTTTATGC
GGTGAACCTCAACCGTATTCAGCTGGAGAAAAAGGAGCGAGTGACTTATC
GACTCGACAAAGAAAATGATGAGTTTTGGAGCGCTAATGCAGCTGCGCCG
TTTCCTGACGTTGCAGAAGCGATTGAGAAGGCCTTGACTCAGTATCGAAC
CGATGTTGACCAAATCAACTGCAAGGCAGCACCTGATTCTTCAGCCGAAT
CTCCGGTGCGCACCGATCAATTGGCAAGCGCCATTTCTTCACTGCCTGAA
CTGTCGAAACGGAAGCAAAACATCGATGTTCATACTAACATTGCAACCGA
ACTCCTAAAAAATATTAATCGCCGCTCACTTGATACCTTTTTCGAGCTTG
AGAGCCGCATTTTCGCCGAACAACCAGCTGTGTCTTCTGTTGCTGCTCAG
GAGTACAAAGTCACCATATTGGAACTGCTCAAAGGAGTGCGCGAAACGTC
TACTGGCGAAAAAAGAGGTGAGGGCACTTCATCGGATCGCCTCCGCTTGT
TTCTCATATACTATACTGTGTTCGGAAAGTATCTATCTGAGACTGACATG
GCCGAATTTCGCTCGGTGCTGCAAAATGCTGGCGCAGACACTTCTTTGAT
TGCCCACTTGGGCCGCCTCAACCGTTACAGACATGATCTTGTCAATGAAG
CCTCTTTGACCAGTGGAACCATGAATGCGGCAAGACTCAAAGGACTAATG
ACCAGTGTTGTTAATCGCGGTTATCGAAGCTTCGCAAATGTTGCTCAGAA
CGCGAAGAAGCTCATCATTGAGCAAAGGAAATCGTTTACTGTAGCCAGCG
TGCTTGATATATTCATGAGTGAGCAAGCAAGAGCAAGAAATGAGTCGCTG
GCAAGTGTTCTTGAGGAATATTTACTCTATGACCCAAAGCTGCTTCCATC
TGCCGGCAATATACCTCTTGAACAAACGGCAACGCGTTTCTCTACTGCGG
AAAATCCCTCTGCTGCAAGAAAAACTTCGCATAGAACGGTTTTTACGGAC
GCTATTGTGTTTATCGTCGGTGGTGGTAACTATGTAGAGTATGACAACTG
TACCGAACCAATACCGTCCAATTCGAATTCGAATTCTTCGAGAAACGTTT
TGTACGGCACAACAGAACTTCTAACTGCTGAAGACTTTCTAGAACAGCTA
TCTACAGTTGCCAAGCGAGGTGCGGGTTAG

Coding sequence (CDS) from alignment at ScGOVlb_425:1927835..1929814+

>Gvermi12883.t1 ID=Gvermi12883.t1|Name=Gvermi12883.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1980bp|location=Sequence derived from alignment at ScGOVlb_425:1927835..1929814+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCGAAGTCGGCAGCCGTCTTCGCCCTGCGGCGCGCGCAGCGCCT
CGTGCTGAGCCGCGTGCTCTCGGTTCCAGACAGTTTGCATTGGCAGGTGT
TGTTATGTGATACCTTCTCACACACGCTCATCGACGCTCTTTTCCCACCT
CCATTGCTGCGCAAGCACGGCGTCACACTCCATGCGCTTGTCGCCAACTC
ACACCAGGCTATCCCTGATGCCAACGCACTCTACATCATCGCCCCGACAG
CCGAAAATATCGCTTATGTTGCCCAGCATCTCGCAGCGCCCGCCCTGTTC
GACACTGCTCGCCTGGCGTTCGTTAGCTCCGCTTCTTCTGCAGTAATTGC
TGCCCTCGCCGCTCAACTTCCTGTACCGTCTCCCATCACCTTTTGCGCCG
ACCTGTACTCGCACTTTATCAGCCTAGATCGCGATCTTTTCACGCTGCAT
ATACCTAATTCTTACGAAAGGCTTACTGCCGCTCACGAGGAACAAAGTCT
CAACCCTTTGATCGATCGCGTCGTCTCTGGCCTGTTTTCGGTCATGCTTA
CTCTCGCGGTGCTACCCATCATCCGCGCCCAGCCGGGCGGCCCCGCAGAA
GCCGTGGCTGCCGGCCTAGACGCCAAGCTGCGCTCAAGCCTTGCACTCTT
TCAGTCTTCATCGCTTTCGAATCGAGCTCTGTCCTTCCGTAGACCGCTGC
TCCTGCTTTTGGACCGTGACATCGACTATCTGTCCATGCTGCATCATACC
TGGACCTACCAAGCGCTTGTACATGATTGTCTGGATATGAGTTTTTATGC
GGTGAACCTCAACCGTATTCAGCTGGAGAAAAAGGAGCGAGTGACTTATC
GACTCGACAAAGAAAATGATGAGTTTTGGAGCGCTAATGCAGCTGCGCCG
TTTCCTGACGTTGCAGAAGCGATTGAGAAGGCCTTGACTCAGTATCGAAC
CGATGTTGACCAAATCAACTGCAAGGCAGCACCTGATTCTTCAGCCGAAT
CTCCGGTGCGCACCGATCAATTGGCAAGCGCCATTTCTTCACTGCCTGAA
CTGTCGAAACGGAAGCAAAACATCGATGTTCATACTAACATTGCAACCGA
ACTCCTAAAAAATATTAATCGCCGCTCACTTGATACCTTTTTCGAGCTTG
AGAGCCGCATTTTCGCCGAACAACCAGCTGTGTCTTCTGTTGCTGCTCAG
GAGTACAAAGTCACCATATTGGAACTGCTCAAAGGAGTGCGCGAAACGTC
TACTGGCGAAAAAAGAGGTGAGGGCACTTCATCGGATCGCCTCCGCTTGT
TTCTCATATACTATACTGTGTTCGGAAAGTATCTATCTGAGACTGACATG
GCCGAATTTCGCTCGGTGCTGCAAAATGCTGGCGCAGACACTTCTTTGAT
TGCCCACTTGGGCCGCCTCAACCGTTACAGACATGATCTTGTCAATGAAG
CCTCTTTGACCAGTGGAACCATGAATGCGGCAAGACTCAAAGGACTAATG
ACCAGTGTTGTTAATCGCGGTTATCGAAGCTTCGCAAATGTTGCTCAGAA
CGCGAAGAAGCTCATCATTGAGCAAAGGAAATCGTTTACTGTAGCCAGCG
TGCTTGATATATTCATGAGTGAGCAAGCAAGAGCAAGAAATGAGTCGCTG
GCAAGTGTTCTTGAGGAATATTTACTCTATGACCCAAAGCTGCTTCCATC
TGCCGGCAATATACCTCTTGAACAAACGGCAACGCGTTTCTCTACTGCGG
AAAATCCCTCTGCTGCAAGAAAAACTTCGCATAGAACGGTTTTTACGGAC
GCTATTGTGTTTATCGTCGGTGGTGGTAACTATGTAGAGTATGACAACTG
TACCGAACCAATACCGTCCAATTCGAATTCGAATTCTTCGAGAAACGTTT
TGTACGGCACAACAGAACTTCTAACTGCTGAAGACTTTCTAGAACAGCTA
TCTACAGTTGCCAAGCGAGGTGCGGGTTAG