Gvermi12795.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12795.t2
Unique Name	Gvermi12795.t2
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	756

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1537547..1539814 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12795	Gvermi12795	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1537547..1539814 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12795.t2.start1	Gvermi12795.t2.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1537547..1537549 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12795.t2.CDS1	Gvermi12795.t2.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1537547..1539814 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12795.t2.exon1	Gvermi12795.t2.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1537547..1539814 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12795.t2.stop1	Gvermi12795.t2.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1539812..1539814 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12795.t2	Gvermi12795.t2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1537547..1539814 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1537547..1539814+
coding sequence from alignment at ScGOVlb_425:1537547..1539814+

mRNA sequence

>Gvermi12795.t2 ID=Gvermi12795.t2|Name=Gvermi12795.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=756bp
MFPPRPAHPAFLPPPALVRSHAAAQPAAQPPSRAAFPTAARALDRAVAAA
WGAPVTLQPVQSIWANTGVWTADDPKRRRRDARTVPPADSVLCPTVEHST
APPPCRSPPSAPVSAAPAASAALSPVCPAPASMSSFAPLQRPPAPGAAPV
SAVAAAAAAAAAAAAAASHAPNSDSQVVRQLENCLRRRKIDRARDILFEN
AQRRVFRTRHYNSLLDALVKANRLHDAEMLFAEFDRNGLVRDVASYSIMI
CAYGKSGRVAQAEKCMNRMRAQHVQPNAFSYSALIEAFGRVGNLQKAEAA
LRHMMNDGVQPNVVAYNALMKVYVKRGRKADAFRLLEEMESLGRKPDVIT
YGTLIDACAKTRDVDRAFQVFHRLQRNNIQPNRVCYASLIDACSKARQPH
RAFQVLASMKANKIHPDIFAYNALIDACGRVKLVERAFDVYQEILQSGLR
PDKVTFNALISACGRARDLSRAFEALESMTNTFNYTPDRHTYNSLIDACG
KSERLDKAFDVFNRMVASGIKPCAVSYNALIDACGRTKNLELAYKLSNQM
RSENIKPDVYTLNTLVAVCGRCGDIDRSFTVLSELREFGVRPDEVTYNTL
IDALGRQGELSRAWSVLEEMIAMGVRPTRVTFNAFACACAKTRDGQLALQ
LYGVMKSQRVDPDPVSYSALIDACCRSSMAMESIPIYDEMKDRRVDTWEN
VGVTLTASCFNSGSFRSAYQVFMTLTPKAQCRVEERIRSAICNLPVGSGG
VPVLA*

spliced messenger RNA

>Gvermi12795.t2 ID=Gvermi12795.t2|Name=Gvermi12795.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2268bp|location=Sequence derived from alignment at ScGOVlb_425:1537547..1539814+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCCGCCGCGCCCCGCCCACCCCGCCTTCCTGCCGCCGCCCGCCCT
CGTGCGCAGCCATGCCGCCGCGCAACCCGCCGCGCAGCCGCCGTCGCGCG
CCGCCTTTCCCACCGCCGCCCGCGCCCTAGACCGCGCCGTCGCCGCCGCC
TGGGGCGCCCCCGTCACCCTGCAGCCCGTCCAGTCCATCTGGGCGAACAC
CGGCGTCTGGACCGCAGACGACCCCAAGCGCCGTCGCCGCGATGCTCGTA
CCGTTCCGCCCGCCGACTCCGTTTTGTGTCCCACCGTCGAGCActccacc
gcgcccccgccctgtcgctctccgccttccgcccccgtctccgccgcccc
tgctgcgtcggccgcgctttcgcctgtgtgccccgcacccgcgtccatgt
cctcgtttgctccgctgcagcgcccgcctgcgcctGGCGCCGCGCCCGTC
Tccgccgtcgccgccgccgccgccgccgccgccgcagctgctgccgccgc
GTCCCATGCGCCCAACTCCGATTCACAAGTTGTGCGCCAGCTGGAGAACT
GTCTGCGACGCCGCAAGATTGACCGCGCCCGCGACATCCTCTTTGAGAAT
GCCCAGCGCCGCGTCTTCCGCACGCGCCACTACAACTCCCTGTTGGACGC
CCTCGTCAAGGCCAACCGCCTGCACGACGCCGAGATGCTCTTTGCCGAGT
TTGACCGCAACGGTCTCGTCAGAGACGTCGCCTCGTACTCCATCATGATT
TGCGCCTACGGCAAGAGCGGCCGTGTGGCGCAGGCCGAAAAGTGCATGAA
CCGCATGCGCGCACAGCATGTGCAGCCCAATGCCTTCTCGTACTCCGCCT
TGATTGAGGCCTTTGGTCGTGTGGGCAACTTGCAGAAGGCTGAGGCTGCC
CTGCGCCACATGATGAACGACGGTGTGCAGCCAAATGTCGTCGCGTATAA
CGCCCTCATGAAGGTTTACGTCAAACGCGGCCGCAAGGCCGACGCCTTCC
GTCTCCTGGAAGAGATGGAGAGCCTCGGACGCAAGCCGGACGTCATCACC
TACGGCACGCTCATCGACGCGTGCGCCAAGACTCGTGACGTTGACCGCGC
TTTTCAGGTGTTTCACCGCTTGCAGCGCAACAACATTCAGCCCAACCGAG
TGTGCTACGCCTCGCTCATAGACGCGTGCTCCAAGGCCAGGCAGCCGCAT
CGCGCCTTTCAGGTGCTCGCCAGTATGAAGGCCAACAAGATTCATCCGGA
CATTTTTGCCTACAATGCTTTGATCGATGCCTGTGGCAGGGTGAAGCTTG
TGGAACGCGCTTTTGACGTGTATCAGGAGATTTTACAGTCTGGTCTGCGC
CCGGACAAGGTTACGTTCAACGCCTTGATTTCCGCCTGTGGCCGAGCGCG
TGATTTATCAAGAGCGTTTGAGGCGCTGGAGTCTATGACCAATACGTTCA
ACTACACGCCTGACCGTCATACGTACAACTCGTTGATTGATGCTTGTGGA
AAGTCGGAGCGACTGGACAAGGCATTTGATGTCTTCAATCGAATGGTCGC
TTCGGGAATCAAACCTTGCGCTGTATCGTACAACGCGCTCATTGATGCAT
GTGGGCGCACCAAGAATCTGGAACTGGCATATAAGCTTTCCAACCAGATG
CGCAGTGAAAATATTAAGCCGGATGTCTACACTTTAAACACTCTGGTCGC
TGTGTGCGGTCGCTGCGGTGACATTGATCGGTCGTTCACTGTGTTATCGG
AACTGCGTGAGTTTGGAGTGCGACCTGATGAGGTGACGTACAACACGCTT
ATAGACGCTCTTGGCAGACAAGGTGAGCTTTCTAGGGCGTGGTCTGTGCT
GGAAGAAATGATTGCCATGGGCGTTCGACCCACTCGCGTCACATTCAACG
CTTTCGCGTGTGCATGTGCCAAGACAAGAGATGGGCAGCTTGCGTTACAG
CTGTACGGGGTTATGAAGAGTCAGCGCGTGGACCCGGATCCGGTTTCGTA
TTCGGCGCTCATTGACGCTTGCTGTCGTAGCTCTATGGCTATGGAGTCGA
TTCCAATTTACGATGAGATGAAGGACCGAAGGGTTGACACATGGGAGAAT
GTGGGCGTCACGCTTACTGCTTCGTGCTTTAATAGCGGCAGTTTTCGAAG
TGCCTACCAAGTTTTCATGACGCTTACGCCTAAGGCGCAATGCAGGGTGG
AGGAGCGAATTCGGTCAGCTATATGCAACCTTCCCGTGGGGTCAGGGGGG
GTGCCCGTGTTGGCTTAA

protein sequence of Gvermi12795.t2

>Gvermi12795.t2 ID=Gvermi12795.t2|Name=Gvermi12795.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=756bp
MFPPRPAHPAFLPPPALVRSHAAAQPAAQPPSRAAFPTAARALDRAVAAA
WGAPVTLQPVQSIWANTGVWTADDPKRRRRDARTVPPADSVLCPTVEHST
APPPCRSPPSAPVSAAPAASAALSPVCPAPASMSSFAPLQRPPAPGAAPV
SAVAAAAAAAAAAAAAASHAPNSDSQVVRQLENCLRRRKIDRARDILFEN
AQRRVFRTRHYNSLLDALVKANRLHDAEMLFAEFDRNGLVRDVASYSIMI
CAYGKSGRVAQAEKCMNRMRAQHVQPNAFSYSALIEAFGRVGNLQKAEAA
LRHMMNDGVQPNVVAYNALMKVYVKRGRKADAFRLLEEMESLGRKPDVIT
YGTLIDACAKTRDVDRAFQVFHRLQRNNIQPNRVCYASLIDACSKARQPH
RAFQVLASMKANKIHPDIFAYNALIDACGRVKLVERAFDVYQEILQSGLR
PDKVTFNALISACGRARDLSRAFEALESMTNTFNYTPDRHTYNSLIDACG
KSERLDKAFDVFNRMVASGIKPCAVSYNALIDACGRTKNLELAYKLSNQM
RSENIKPDVYTLNTLVAVCGRCGDIDRSFTVLSELREFGVRPDEVTYNTL
IDALGRQGELSRAWSVLEEMIAMGVRPTRVTFNAFACACAKTRDGQLALQ
LYGVMKSQRVDPDPVSYSALIDACCRSSMAMESIPIYDEMKDRRVDTWEN
VGVTLTASCFNSGSFRSAYQVFMTLTPKAQCRVEERIRSAICNLPVGSGG
VPVLA*

mRNA from alignment at ScGOVlb_425:1537547..1539814+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12795.t2 ID=Gvermi12795.t2|Name=Gvermi12795.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2268bp|location=Sequence derived from alignment at ScGOVlb_425:1537547..1539814+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCCCGCCGCGCCCCGCCCACCCCGCCTTCCTGCCGCCGCCCGCCCT
CGTGCGCAGCCATGCCGCCGCGCAACCCGCCGCGCAGCCGCCGTCGCGCG
CCGCCTTTCCCACCGCCGCCCGCGCCCTAGACCGCGCCGTCGCCGCCGCC
TGGGGCGCCCCCGTCACCCTGCAGCCCGTCCAGTCCATCTGGGCGAACAC
CGGCGTCTGGACCGCAGACGACCCCAAGCGCCGTCGCCGCGATGCTCGTA
CCGTTCCGCCCGCCGACTCCGTTTTGTGTCCCACCGTCGAGCActccacc
gcgcccccgccctgtcgctctccgccttccgcccccgtctccgccgcccc
tgctgcgtcggccgcgctttcgcctgtgtgccccgcacccgcgtccatgt
cctcgtttgctccgctgcagcgcccgcctgcgcctGGCGCCGCGCCCGTC
Tccgccgtcgccgccgccgccgccgccgccgccgcagctgctgccgccgc
GTCCCATGCGCCCAACTCCGATTCACAAGTTGTGCGCCAGCTGGAGAACT
GTCTGCGACGCCGCAAGATTGACCGCGCCCGCGACATCCTCTTTGAGAAT
GCCCAGCGCCGCGTCTTCCGCACGCGCCACTACAACTCCCTGTTGGACGC
CCTCGTCAAGGCCAACCGCCTGCACGACGCCGAGATGCTCTTTGCCGAGT
TTGACCGCAACGGTCTCGTCAGAGACGTCGCCTCGTACTCCATCATGATT
TGCGCCTACGGCAAGAGCGGCCGTGTGGCGCAGGCCGAAAAGTGCATGAA
CCGCATGCGCGCACAGCATGTGCAGCCCAATGCCTTCTCGTACTCCGCCT
TGATTGAGGCCTTTGGTCGTGTGGGCAACTTGCAGAAGGCTGAGGCTGCC
CTGCGCCACATGATGAACGACGGTGTGCAGCCAAATGTCGTCGCGTATAA
CGCCCTCATGAAGGTTTACGTCAAACGCGGCCGCAAGGCCGACGCCTTCC
GTCTCCTGGAAGAGATGGAGAGCCTCGGACGCAAGCCGGACGTCATCACC
TACGGCACGCTCATCGACGCGTGCGCCAAGACTCGTGACGTTGACCGCGC
TTTTCAGGTGTTTCACCGCTTGCAGCGCAACAACATTCAGCCCAACCGAG
TGTGCTACGCCTCGCTCATAGACGCGTGCTCCAAGGCCAGGCAGCCGCAT
CGCGCCTTTCAGGTGCTCGCCAGTATGAAGGCCAACAAGATTCATCCGGA
CATTTTTGCCTACAATGCTTTGATCGATGCCTGTGGCAGGGTGAAGCTTG
TGGAACGCGCTTTTGACGTGTATCAGGAGATTTTACAGTCTGGTCTGCGC
CCGGACAAGGTTACGTTCAACGCCTTGATTTCCGCCTGTGGCCGAGCGCG
TGATTTATCAAGAGCGTTTGAGGCGCTGGAGTCTATGACCAATACGTTCA
ACTACACGCCTGACCGTCATACGTACAACTCGTTGATTGATGCTTGTGGA
AAGTCGGAGCGACTGGACAAGGCATTTGATGTCTTCAATCGAATGGTCGC
TTCGGGAATCAAACCTTGCGCTGTATCGTACAACGCGCTCATTGATGCAT
GTGGGCGCACCAAGAATCTGGAACTGGCATATAAGCTTTCCAACCAGATG
CGCAGTGAAAATATTAAGCCGGATGTCTACACTTTAAACACTCTGGTCGC
TGTGTGCGGTCGCTGCGGTGACATTGATCGGTCGTTCACTGTGTTATCGG
AACTGCGTGAGTTTGGAGTGCGACCTGATGAGGTGACGTACAACACGCTT
ATAGACGCTCTTGGCAGACAAGGTGAGCTTTCTAGGGCGTGGTCTGTGCT
GGAAGAAATGATTGCCATGGGCGTTCGACCCACTCGCGTCACATTCAACG
CTTTCGCGTGTGCATGTGCCAAGACAAGAGATGGGCAGCTTGCGTTACAG
CTGTACGGGGTTATGAAGAGTCAGCGCGTGGACCCGGATCCGGTTTCGTA
TTCGGCGCTCATTGACGCTTGCTGTCGTAGCTCTATGGCTATGGAGTCGA
TTCCAATTTACGATGAGATGAAGGACCGAAGGGTTGACACATGGGAGAAT
GTGGGCGTCACGCTTACTGCTTCGTGCTTTAATAGCGGCAGTTTTCGAAG
TGCCTACCAAGTTTTCATGACGCTTACGCCTAAGGCGCAATGCAGGGTGG
AGGAGCGAATTCGGTCAGCTATATGCAACCTTCCCGTGGGGTCAGGGGGG
GTGCCCGTGTTGGCTTAA

Coding sequence (CDS) from alignment at ScGOVlb_425:1537547..1539814+

>Gvermi12795.t2 ID=Gvermi12795.t2|Name=Gvermi12795.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2268bp|location=Sequence derived from alignment at ScGOVlb_425:1537547..1539814+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCCCGCCGCGCCCCGCCCACCCCGCCTTCCTGCCGCCGCCCGCCCT
CGTGCGCAGCCATGCCGCCGCGCAACCCGCCGCGCAGCCGCCGTCGCGCG
CCGCCTTTCCCACCGCCGCCCGCGCCCTAGACCGCGCCGTCGCCGCCGCC
TGGGGCGCCCCCGTCACCCTGCAGCCCGTCCAGTCCATCTGGGCGAACAC
CGGCGTCTGGACCGCAGACGACCCCAAGCGCCGTCGCCGCGATGCTCGTA
CCGTTCCGCCCGCCGACTCCGTTTTGTGTCCCACCGTCGAGCActccacc
gcgcccccgccctgtcgctctccgccttccgcccccgtctccgccgcccc
tgctgcgtcggccgcgctttcgcctgtgtgccccgcacccgcgtccatgt
cctcgtttgctccgctgcagcgcccgcctgcgcctGGCGCCGCGCCCGTC
Tccgccgtcgccgccgccgccgccgccgccgccgcagctgctgccgccgc
GTCCCATGCGCCCAACTCCGATTCACAAGTTGTGCGCCAGCTGGAGAACT
GTCTGCGACGCCGCAAGATTGACCGCGCCCGCGACATCCTCTTTGAGAAT
GCCCAGCGCCGCGTCTTCCGCACGCGCCACTACAACTCCCTGTTGGACGC
CCTCGTCAAGGCCAACCGCCTGCACGACGCCGAGATGCTCTTTGCCGAGT
TTGACCGCAACGGTCTCGTCAGAGACGTCGCCTCGTACTCCATCATGATT
TGCGCCTACGGCAAGAGCGGCCGTGTGGCGCAGGCCGAAAAGTGCATGAA
CCGCATGCGCGCACAGCATGTGCAGCCCAATGCCTTCTCGTACTCCGCCT
TGATTGAGGCCTTTGGTCGTGTGGGCAACTTGCAGAAGGCTGAGGCTGCC
CTGCGCCACATGATGAACGACGGTGTGCAGCCAAATGTCGTCGCGTATAA
CGCCCTCATGAAGGTTTACGTCAAACGCGGCCGCAAGGCCGACGCCTTCC
GTCTCCTGGAAGAGATGGAGAGCCTCGGACGCAAGCCGGACGTCATCACC
TACGGCACGCTCATCGACGCGTGCGCCAAGACTCGTGACGTTGACCGCGC
TTTTCAGGTGTTTCACCGCTTGCAGCGCAACAACATTCAGCCCAACCGAG
TGTGCTACGCCTCGCTCATAGACGCGTGCTCCAAGGCCAGGCAGCCGCAT
CGCGCCTTTCAGGTGCTCGCCAGTATGAAGGCCAACAAGATTCATCCGGA
CATTTTTGCCTACAATGCTTTGATCGATGCCTGTGGCAGGGTGAAGCTTG
TGGAACGCGCTTTTGACGTGTATCAGGAGATTTTACAGTCTGGTCTGCGC
CCGGACAAGGTTACGTTCAACGCCTTGATTTCCGCCTGTGGCCGAGCGCG
TGATTTATCAAGAGCGTTTGAGGCGCTGGAGTCTATGACCAATACGTTCA
ACTACACGCCTGACCGTCATACGTACAACTCGTTGATTGATGCTTGTGGA
AAGTCGGAGCGACTGGACAAGGCATTTGATGTCTTCAATCGAATGGTCGC
TTCGGGAATCAAACCTTGCGCTGTATCGTACAACGCGCTCATTGATGCAT
GTGGGCGCACCAAGAATCTGGAACTGGCATATAAGCTTTCCAACCAGATG
CGCAGTGAAAATATTAAGCCGGATGTCTACACTTTAAACACTCTGGTCGC
TGTGTGCGGTCGCTGCGGTGACATTGATCGGTCGTTCACTGTGTTATCGG
AACTGCGTGAGTTTGGAGTGCGACCTGATGAGGTGACGTACAACACGCTT
ATAGACGCTCTTGGCAGACAAGGTGAGCTTTCTAGGGCGTGGTCTGTGCT
GGAAGAAATGATTGCCATGGGCGTTCGACCCACTCGCGTCACATTCAACG
CTTTCGCGTGTGCATGTGCCAAGACAAGAGATGGGCAGCTTGCGTTACAG
CTGTACGGGGTTATGAAGAGTCAGCGCGTGGACCCGGATCCGGTTTCGTA
TTCGGCGCTCATTGACGCTTGCTGTCGTAGCTCTATGGCTATGGAGTCGA
TTCCAATTTACGATGAGATGAAGGACCGAAGGGTTGACACATGGGAGAAT
GTGGGCGTCACGCTTACTGCTTCGTGCTTTAATAGCGGCAGTTTTCGAAG
TGCCTACCAAGTTTTCATGACGCTTACGCCTAAGGCGCAATGCAGGGTGG
AGGAGCGAATTCGGTCAGCTATATGCAACCTTCCCGTGGGGTCAGGGGGG
GTGCCCGTGTTGGCTTAA