Gvermi12808.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12808.t1
Unique NameGvermi12808.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length115
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1583742..1584188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog221103.XP_007845626.1
PFAMszf-C2H2
Max annot lvl4751|Fungi
Evalue0.000966
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,3AS4K@33154|Opisthokonta,3PH4Y@4751|Fungi,3V79U@5204|Basidiomycota,22CBC@155619|Agaricomycetes,3W881@5338|Agaricales
Descriptionzinc finger
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12808Gvermi12808Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1583742..1584188 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12808.t1Gvermi12808.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1583742..1584188 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12808.t1.stop1Gvermi12808.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1583742..1583744 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12808.t1.CDS1Gvermi12808.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1583742..1584057 -
Gvermi12808.t1.CDS2Gvermi12808.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1584160..1584188 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12808.t1.exon1Gvermi12808.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1583742..1584057 -
Gvermi12808.t1.exon2Gvermi12808.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1584160..1584188 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12808.t1.intron1Gvermi12808.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1584058..1584159 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12808.t1.start1Gvermi12808.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1584186..1584188 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12808.t1 ID=Gvermi12808.t1|Name=Gvermi12808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=115bp
LQTFGEKGNLNKHIRALHEKARPFKCSECASAFSFHDGLQRHVAMVHRER
RPFACSEPGCDKAFKQKAHVHKHVTSVHRKEKPCQCFCGARFRERYNMRQ
HQKAVHHMHRPLSS*
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spliced messenger RNA

>Gvermi12808.t1 ID=Gvermi12808.t1|Name=Gvermi12808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=345bp|location=Sequence derived from alignment at ScGOVlb_425:1583742..1584188- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCAGACGTTTGGCGAGAAGGGCAACCTAAACAAGCACATCCGCGCGCT
GCACGAGAAGGCGCGCCCGTTCAAGTGCAGCGAGTGCGCGTCGGCCTTCT
CGTTCCACGACGGGCTGCAGCGGCACGTGGCGATGGTGCACCGCGAGCGA
CGCCCGTTCGCGTGCTCGGAGCCGGGCTGCGACAAGGCGTTCAAGCAGAA
GGCGCACGTGCACAAGCACGTCACCAGCGTGCACCGCAAGGAGAAGCCGT
GCCAGTGCTTCTGCGGCGCCCGATTCCGCGAGCGCTACAACATGCGCCAG
CACCAGAAGGCCGTGCACCACATGCACCGCCCGCTCAGCTCATAA
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protein sequence of Gvermi12808.t1

>Gvermi12808.t1 ID=Gvermi12808.t1|Name=Gvermi12808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=115bp
LQTFGEKGNLNKHIRALHEKARPFKCSECASAFSFHDGLQRHVAMVHRER
RPFACSEPGCDKAFKQKAHVHKHVTSVHRKEKPCQCFCGARFRERYNMRQ
HQKAVHHMHRPLSS*
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mRNA from alignment at ScGOVlb_425:1583742..1584188-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12808.t1 ID=Gvermi12808.t1|Name=Gvermi12808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=447bp|location=Sequence derived from alignment at ScGOVlb_425:1583742..1584188- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCAGACGTTTGGCGAGAAGGGCAACCTGTAAGTTGCGCAGCCACGCAG
CGACGCGCCCACGCGCCCGCGCGCCCACGCGGCGACGCAGCGACGCAGCG
ACGCAGCCACTAACCGCGCCACACTGCGCAGAAACAAGCACATCCGCGCG
CTGCACGAGAAGGCGCGCCCGTTCAAGTGCAGCGAGTGCGCGTCGGCCTT
CTCGTTCCACGACGGGCTGCAGCGGCACGTGGCGATGGTGCACCGCGAGC
GACGCCCGTTCGCGTGCTCGGAGCCGGGCTGCGACAAGGCGTTCAAGCAG
AAGGCGCACGTGCACAAGCACGTCACCAGCGTGCACCGCAAGGAGAAGCC
GTGCCAGTGCTTCTGCGGCGCCCGATTCCGCGAGCGCTACAACATGCGCC
AGCACCAGAAGGCCGTGCACCACATGCACCGCCCGCTCAGCTCATAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1583742..1584188-

>Gvermi12808.t1 ID=Gvermi12808.t1|Name=Gvermi12808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=345bp|location=Sequence derived from alignment at ScGOVlb_425:1583742..1584188- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCAGACGTTTGGCGAGAAGGGCAACCTAAACAAGCACATCCGCGCGCT
GCACGAGAAGGCGCGCCCGTTCAAGTGCAGCGAGTGCGCGTCGGCCTTCT
CGTTCCACGACGGGCTGCAGCGGCACGTGGCGATGGTGCACCGCGAGCGA
CGCCCGTTCGCGTGCTCGGAGCCGGGCTGCGACAAGGCGTTCAAGCAGAA
GGCGCACGTGCACAAGCACGTCACCAGCGTGCACCGCAAGGAGAAGCCGT
GCCAGTGCTTCTGCGGCGCCCGATTCCGCGAGCGCTACAACATGCGCCAG
CACCAGAAGGCCGTGCACCACATGCACCGCCCGCTCAGCTCATAA
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