Gvermi12896.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12896.t1
Unique NameGvermi12896.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1979489..1980400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog77586.LPERR04G12720.1
PFAMsRNase_H2-Ydr279
Max annot lvl35493|Streptophyta
KEGG koko:K10744
KEGG Pathwayko03030,map03030
Evalue5.37e-09
EggNOG OGsKOG4705@1|root,KOG4705@2759|Eukaryota,37SKJ@33090|Viridiplantae,3GBX3@35493|Streptophyta,3KV0P@4447|Liliopsida,3I3PZ@38820|Poales
DescriptionYdr279p protein family (RNase H2 complex component)
COG categoryS
BRITEko00000,ko00001,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12896Gvermi12896Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1979489..1980400 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12896.t1.stop1Gvermi12896.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1979489..1979491 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12896.t1.CDS1Gvermi12896.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1979489..1980400 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12896.t1.exon1Gvermi12896.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1979489..1980400 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12896.t1.start1Gvermi12896.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1980398..1980400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12896.t1Gvermi12896.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1979489..1980400 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12896.t1 ID=Gvermi12896.t1|Name=Gvermi12896.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=304bp
MAPAHPKSGLVVIPKDLTASSLPETNPSLISFEAIELPVKNTDKIVPLYI
AHDHNESSVVVEFVKFTHTHGSWITVPQDFALAPHFCSDGNLTFITKVDP
LFAILIVMDCNSESAQPGVFQPLDVLCTTEEGRNLSNLSSKPQIALLCDS
KVAGGESFYRLSKEKTVSWILRKHQLLSQHPRLNDQCAADILCQYLTQRW
ATLFKSALDIRKPIAQSIPGADSPADLAMSIMMDGAKDNSIATSLPQYDK
KRKASQKRTTTLSKKKKDVVNKQVAKWWASRKTSANARTTSSRKKALRSS
ATK*
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spliced messenger RNA

>Gvermi12896.t1 ID=Gvermi12896.t1|Name=Gvermi12896.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=912bp|location=Sequence derived from alignment at ScGOVlb_425:1979489..1980400- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCAGCGCATCCAAAGTCAGGATTGGTGGTCATCCCTAAAGATTT
GACTGCCAGCTCCCTGCCAGAAACAAATCCTTCATTAATCTCTTTTGAAG
CCATTGAGTTACCAGTGAAAAACACCGATAAGATTGTCCCACTTTACATC
GCCCATGACCACAATGAATCCAGTGTGGTAGTGGAATTCGTCAAATTTAC
CCACACCCACGGCTCCTGGATAACCGTTCCACAAGATTTTGCGCTTGCAC
CACATTTTTGCAGCGACGGCAACCTGACTTTCATCACCAAGGTGGATCCT
CTTTTCGCCATTCTCATCGTTATGGACTGCAACAGCGAATCTGCGCAACC
TGGTGTCTTTCAGCCTCTGGATGTCCTTTGCACAACGGAAGAGGGAAGAA
ATCTGAGCAATCTCAGTTCCAAACCGCAAATAGCCCTTCTTTGCGATTCT
AAGGTTGCCGGGGGTGAGTCATTCTATCGATTGAGCAAAGAGAAAACTGT
ATCATGGATTTTGCGCAAGCACCAACTGTTGTCTCAACACCCACGCCTCA
ACGATCAGTGTGCTGCTGATATTTTGTGCCAGTATCTAACTCAAAGATGG
GCTACGCTTTTCAAAAGCGCTTTGGACATCCGAAAGCCTATCGCGCAGAG
TATTCCCGGAGCAGACAGTCCTGCTGATTTGGCCATGTCTATCATGATGG
ACGGTGCCAAAGATAATAGTATTGCAACCAGCTTGCCACAATACGATAAG
AAGCGAAAAGCATCACAAAAACGGACTACAACGCTTTCGAAGAAAAAGAA
AGATGTGGTAAACAAACAGGTTGCGAAGTGGTGGGCATCGAGAAAAACTT
CTGCCAATGCTAGAACAACATCTTCTCGGAAGAAGGCATTGCGATCATCC
GCTACAAAATGA
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protein sequence of Gvermi12896.t1

>Gvermi12896.t1 ID=Gvermi12896.t1|Name=Gvermi12896.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=304bp
MAPAHPKSGLVVIPKDLTASSLPETNPSLISFEAIELPVKNTDKIVPLYI
AHDHNESSVVVEFVKFTHTHGSWITVPQDFALAPHFCSDGNLTFITKVDP
LFAILIVMDCNSESAQPGVFQPLDVLCTTEEGRNLSNLSSKPQIALLCDS
KVAGGESFYRLSKEKTVSWILRKHQLLSQHPRLNDQCAADILCQYLTQRW
ATLFKSALDIRKPIAQSIPGADSPADLAMSIMMDGAKDNSIATSLPQYDK
KRKASQKRTTTLSKKKKDVVNKQVAKWWASRKTSANARTTSSRKKALRSS
ATK*
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mRNA from alignment at ScGOVlb_425:1979489..1980400-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12896.t1 ID=Gvermi12896.t1|Name=Gvermi12896.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=912bp|location=Sequence derived from alignment at ScGOVlb_425:1979489..1980400- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCAGCGCATCCAAAGTCAGGATTGGTGGTCATCCCTAAAGATTT
GACTGCCAGCTCCCTGCCAGAAACAAATCCTTCATTAATCTCTTTTGAAG
CCATTGAGTTACCAGTGAAAAACACCGATAAGATTGTCCCACTTTACATC
GCCCATGACCACAATGAATCCAGTGTGGTAGTGGAATTCGTCAAATTTAC
CCACACCCACGGCTCCTGGATAACCGTTCCACAAGATTTTGCGCTTGCAC
CACATTTTTGCAGCGACGGCAACCTGACTTTCATCACCAAGGTGGATCCT
CTTTTCGCCATTCTCATCGTTATGGACTGCAACAGCGAATCTGCGCAACC
TGGTGTCTTTCAGCCTCTGGATGTCCTTTGCACAACGGAAGAGGGAAGAA
ATCTGAGCAATCTCAGTTCCAAACCGCAAATAGCCCTTCTTTGCGATTCT
AAGGTTGCCGGGGGTGAGTCATTCTATCGATTGAGCAAAGAGAAAACTGT
ATCATGGATTTTGCGCAAGCACCAACTGTTGTCTCAACACCCACGCCTCA
ACGATCAGTGTGCTGCTGATATTTTGTGCCAGTATCTAACTCAAAGATGG
GCTACGCTTTTCAAAAGCGCTTTGGACATCCGAAAGCCTATCGCGCAGAG
TATTCCCGGAGCAGACAGTCCTGCTGATTTGGCCATGTCTATCATGATGG
ACGGTGCCAAAGATAATAGTATTGCAACCAGCTTGCCACAATACGATAAG
AAGCGAAAAGCATCACAAAAACGGACTACAACGCTTTCGAAGAAAAAGAA
AGATGTGGTAAACAAACAGGTTGCGAAGTGGTGGGCATCGAGAAAAACTT
CTGCCAATGCTAGAACAACATCTTCTCGGAAGAAGGCATTGCGATCATCC
GCTACAAAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1979489..1980400-

>Gvermi12896.t1 ID=Gvermi12896.t1|Name=Gvermi12896.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=912bp|location=Sequence derived from alignment at ScGOVlb_425:1979489..1980400- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCAGCGCATCCAAAGTCAGGATTGGTGGTCATCCCTAAAGATTT
GACTGCCAGCTCCCTGCCAGAAACAAATCCTTCATTAATCTCTTTTGAAG
CCATTGAGTTACCAGTGAAAAACACCGATAAGATTGTCCCACTTTACATC
GCCCATGACCACAATGAATCCAGTGTGGTAGTGGAATTCGTCAAATTTAC
CCACACCCACGGCTCCTGGATAACCGTTCCACAAGATTTTGCGCTTGCAC
CACATTTTTGCAGCGACGGCAACCTGACTTTCATCACCAAGGTGGATCCT
CTTTTCGCCATTCTCATCGTTATGGACTGCAACAGCGAATCTGCGCAACC
TGGTGTCTTTCAGCCTCTGGATGTCCTTTGCACAACGGAAGAGGGAAGAA
ATCTGAGCAATCTCAGTTCCAAACCGCAAATAGCCCTTCTTTGCGATTCT
AAGGTTGCCGGGGGTGAGTCATTCTATCGATTGAGCAAAGAGAAAACTGT
ATCATGGATTTTGCGCAAGCACCAACTGTTGTCTCAACACCCACGCCTCA
ACGATCAGTGTGCTGCTGATATTTTGTGCCAGTATCTAACTCAAAGATGG
GCTACGCTTTTCAAAAGCGCTTTGGACATCCGAAAGCCTATCGCGCAGAG
TATTCCCGGAGCAGACAGTCCTGCTGATTTGGCCATGTCTATCATGATGG
ACGGTGCCAAAGATAATAGTATTGCAACCAGCTTGCCACAATACGATAAG
AAGCGAAAAGCATCACAAAAACGGACTACAACGCTTTCGAAGAAAAAGAA
AGATGTGGTAAACAAACAGGTTGCGAAGTGGTGGGCATCGAGAAAAACTT
CTGCCAATGCTAGAACAACATCTTCTCGGAAGAAGGCATTGCGATCATCC
GCTACAAAATGA
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