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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 45157.CMF089CT |
| Preferred name | DXS |
| PFAMs | DXP_synthase_N,Transket_pyr,Transketolase_C |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC00032,RC00226,RC00571,RC01560 |
| KEGG ko | ko:K00615,ko:K01662 |
| KEGG Reaction | R01067,R01641,R01830,R05636,R06590 |
| KEGG Pathway | ko00030,ko00710,ko00730,ko00900,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map00730,map00900,map01051,map01100,map01110,map01120,map01130,map01200,map01230 |
| KEGG Module | M00004,M00007,M00096,M00165,M00167 |
| GOs | GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006725,GO:0006778,GO:0006779,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0008661,GO:0009058,GO:0009240,GO:0009507,GO:0009536,GO:0009987,GO:0015994,GO:0015995,GO:0016740,GO:0016744,GO:0018130,GO:0019288,GO:0019438,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0033013,GO:0033014,GO:0034641,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046490,GO:0051186,GO:0051188,GO:0071704,GO:0090407,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 |
| Evalue | 0.0 |
| EggNOG OGs | COG0021@1|root,KOG0523@2759|Eukaryota |
| EC | 2.2.1.1,2.2.1.7 |
| Description | transketolase activity |
| COG category | G |
| BiGG Reaction | iRC1080.CRv4_Au5_s7_g14558_t1 |
| BRITE | ko00000,ko00001,ko00002,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi12930.t1 ID=Gvermi12930.t1|Name=Gvermi12930.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=733bp MRPLAAAFTVPVVPLPRHSSFAPASRPPRPPRHRHVPLRAALDPSSSPSQ PAFRGPRSTPLLDSIASPQDLRRLRATDLSALAQELRWDVLRTVAATGGH LGASLGVIELTIALHYVFNTPHDRLIWDVSHQAYPHKILTGRRNRMHTLR KNGGLSGFTKRAESEYDPFGAGHSSTSISAGLGMQVARDVAGVPGLSIAV IGDGAITGGQAYEAMNNAGYLKNRFIVILNDNAQVSLPTGTKSVAGVRPS GALSDYSSRVLSSRPFQDLRGAAKNLSRLFPEGFQDVAAQVDEIGRGFLS QGGTLFEQLGFYYVGPIDGHKLPVLVNVLQNVRDMPGNKPVLIHVKTRKG KGYPPAEAALDKYHGVARFDVATGKQHKSVSKTPSYTSVFANALVAHAHK DRKILAITAAMPGGTGLNVFGEVHPTRCHDVGIAEQHAVTMAAGMACEGF KPFCCIYSTFLQRGYDQLVHDVALQKLPVRFILDRAGLVGNDGPTHHGSF DLAYIGCIPHMTIMAPSDEIELQNMVATALNIDDGPSVVRYPRGVGVGLD VINSKFGGNYPEMPVKGRPVPIGRGRIIRRIGSMSGRKGSVAILSLGTRL MEAVKASEMLQQLDIAVTVADARFMKPLDRDLIRELASTHEIMITVEEGS IGGFGDHVLHFLSLEGLLDDGAVRFRPMVLPDRFIDHGSQSEQYEEAGLS AKHIHATAMRLLGRSAELMPVSSSMDQSSAGN* back to topspliced messenger RNA >Gvermi12930.t1 ID=Gvermi12930.t1|Name=Gvermi12930.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2199bp|location=Sequence derived from alignment at ScGOVlb_425:2197639..2199837+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCGCCCCCTCGCTGCCGCTTTCACCGTGCCGGTCGTGCCGCTGCCGCG CCACTCCTCCTTCGCCCCCGCGTCTCGCCCGCCTCGCCCTCCCCGCCACC GACATGTACCCCTCCGTGCCGCGCTCGACCCTTCCTCCTCCCCCTCGCAG CCCGCCTTCCGCGGCCCGCGCTCCACCCCGCTCCTCGACTCCATAGCCTC TCCCCAAGACTTGCGCCGCCTCCGCGCCACCGATCTCTCCGCACTCGCCC AAGAGCTGCGATGGGACGTGCTCCGCACCGTCGCCGCCACCGGCGGCCAC CTCGGCGCCTCGCTCGGCGTCATCGAACTCACCATCGCCCTCCACTACGT CTTCAACACCCCCCACGACCGCCTCATTTGGGATGTCTCCCACCAGGCCT ACCCGCACAAGATCCTCACTGGCCGCCGCAACCGCATGCACACGTTGCGC AAGAACGGCGGCCTGTCCGGTTTCACAAAGCGCGCCGAGAGCGAGTACGA CCCGTTCGGCGCCGGCCACTCCTCTACCAGCATTAGCGCCGGCTTGGGCA TGCAGGTCGCACGCGACGTCGCTGGCGTCCCGGGCCTGTCCATCGCCGTC ATCGGCGACGGCGCCATCACCGGCGGCCAGGCTTACGAGGCCATGAACAA TGCGGGCTACCTTAAGAATCGCTTCATCGTCATCCTCAACGACAACGCGC AGGTGTCGCTGCCCACCGGAACCAAGTCCGTCGCCGGCGTCCGCCCCTCA GGCGCCCTCAGCGACTACAGCAGCCGCGTCCTGTCGTCGCGCCCGTTTCA GGACCTGCGCGGCGCCGCGAAGAACCTGTCGCGCCTCTTTCCGGAAGGCT TCCAGGACGTTGCCGCCCAGGTCGACGAGATTGGCAGGGGCTTCCTGTCG CAGGGCGGCACCCTGTTCGAGCAGCTGGGCTTCTACTATGTGGGGCCCAT TGACGGCCACAAACTCCCTGTGCTCGTCAACGTGCTGCAAAACGTCCGCG ACATGCCCGGCAACAAGCCCGTTTTGATTCACGTCAAGACCCGCAAGGGC AAAGGCTACCCGCCGGCGGAGGCCGCCCTGGACAAGTACCACGGCGTCGC CCGCTTTGACGTCGCTACGGGGAAGCAGCACAAGTCCGTCTCCAAGACCC CTTCGTACACCTCCGTCTTTGCCAACGCACTCGTTGCGCATGCGCACAAG GATCGCAAGATTCTCGCCATCACCGCGGCCATGCCCGGCGGCACGGGCTT GAACGTTTTCGGAGAAGTTCATCCCACGCGCTGCCACGACGTCGGCATTG CCGAGCAGCACGCCGTCACCATGGCCGCTGGCATGGCCTGCGAGGGCTTT AAGCCGTTTTGCTGCATCTACTCCACCTTCTTGCAACGGGGCTATGACCA ACTTGTGCATGACGTCGCCCTGCAAAAGCTGCCGGTGCGATTCATTCTCG ATCGCGCCGGCCTTGTGGGGAACGACGGTCCCACGCACCACGGATCGTTT GACCTGGCCTACATTGGCTGCATTCCGCACATGACCATCATGGCGCCCTC CGACGAAATCGAGCTGCAGAACATGGTCGCCACCGCTCTCAACATAGACG ATGGACCGTCTGTCGTGAGATACCCGCGTGGAGTGGGTGTCGGCTTGGAC GTGATCAACTCCAAGTTTGGTGGCAACTATCCGGAGATGCCTGTAAAGGG GCGTCCCGTGCCGATTGGGCGCGGCCGTATCATCCGTCGTATCGGCTCCA TGAGCGGAAGGAAAGGATCTGTGGCCATCCTCAGTCTGGGAACGCGTCTG ATGGAGGCCGTCAAAGCATCGGAAATGTTGCAGCAACTGGACATTGCCGT CACGGTTGCCGATGCGCGCTTTATGAAACCGCTGGACCGCGATTTAATTC GCGAATTGGCGTCCACACACGAGATTATGATCACAGTGGAGGAGGGTTCC ATTGGTGGCTTTGGTGATCATGTGTTGCACTTCTTATCCCTCGAGGGTCT GTTGGATGACGGCGCTGTCAGGTTTAGACCTATGGTTCTGCCGGACCGAT TCATTGACCACGGCAGTCAATCGGAGCAGTACGAAGAGGCTGGTCTGAGC GCCAAGCACATTCACGCCACCGCGATGCGCTTGTTGGGTCGCTCGGCGGA GCTCATGCCCGTCTCGTCATCCATGGATCAGAGCAGCGCGGGCAACTGA back to topprotein sequence of Gvermi12930.t1 >Gvermi12930.t1 ID=Gvermi12930.t1|Name=Gvermi12930.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=733bp
MRPLAAAFTVPVVPLPRHSSFAPASRPPRPPRHRHVPLRAALDPSSSPSQ PAFRGPRSTPLLDSIASPQDLRRLRATDLSALAQELRWDVLRTVAATGGH LGASLGVIELTIALHYVFNTPHDRLIWDVSHQAYPHKILTGRRNRMHTLR KNGGLSGFTKRAESEYDPFGAGHSSTSISAGLGMQVARDVAGVPGLSIAV IGDGAITGGQAYEAMNNAGYLKNRFIVILNDNAQVSLPTGTKSVAGVRPS GALSDYSSRVLSSRPFQDLRGAAKNLSRLFPEGFQDVAAQVDEIGRGFLS QGGTLFEQLGFYYVGPIDGHKLPVLVNVLQNVRDMPGNKPVLIHVKTRKG KGYPPAEAALDKYHGVARFDVATGKQHKSVSKTPSYTSVFANALVAHAHK DRKILAITAAMPGGTGLNVFGEVHPTRCHDVGIAEQHAVTMAAGMACEGF KPFCCIYSTFLQRGYDQLVHDVALQKLPVRFILDRAGLVGNDGPTHHGSF DLAYIGCIPHMTIMAPSDEIELQNMVATALNIDDGPSVVRYPRGVGVGLD VINSKFGGNYPEMPVKGRPVPIGRGRIIRRIGSMSGRKGSVAILSLGTRL MEAVKASEMLQQLDIAVTVADARFMKPLDRDLIRELASTHEIMITVEEGS IGGFGDHVLHFLSLEGLLDDGAVRFRPMVLPDRFIDHGSQSEQYEEAGLS AKHIHATAMRLLGRSAELMPVSSSMDQSSAGN* back to topmRNA from alignment at ScGOVlb_425:2197639..2199837+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi12930.t1 ID=Gvermi12930.t1|Name=Gvermi12930.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2199bp|location=Sequence derived from alignment at ScGOVlb_425:2197639..2199837+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGCGCCCCCTCGCTGCCGCTTTCACCGTGCCGGTCGTGCCGCTGCCGCG
CCACTCCTCCTTCGCCCCCGCGTCTCGCCCGCCTCGCCCTCCCCGCCACC
GACATGTACCCCTCCGTGCCGCGCTCGACCCTTCCTCCTCCCCCTCGCAG
CCCGCCTTCCGCGGCCCGCGCTCCACCCCGCTCCTCGACTCCATAGCCTC
TCCCCAAGACTTGCGCCGCCTCCGCGCCACCGATCTCTCCGCACTCGCCC
AAGAGCTGCGATGGGACGTGCTCCGCACCGTCGCCGCCACCGGCGGCCAC
CTCGGCGCCTCGCTCGGCGTCATCGAACTCACCATCGCCCTCCACTACGT
CTTCAACACCCCCCACGACCGCCTCATTTGGGATGTCTCCCACCAGGCCT
ACCCGCACAAGATCCTCACTGGCCGCCGCAACCGCATGCACACGTTGCGC
AAGAACGGCGGCCTGTCCGGTTTCACAAAGCGCGCCGAGAGCGAGTACGA
CCCGTTCGGCGCCGGCCACTCCTCTACCAGCATTAGCGCCGGCTTGGGCA
TGCAGGTCGCACGCGACGTCGCTGGCGTCCCGGGCCTGTCCATCGCCGTC
ATCGGCGACGGCGCCATCACCGGCGGCCAGGCTTACGAGGCCATGAACAA
TGCGGGCTACCTTAAGAATCGCTTCATCGTCATCCTCAACGACAACGCGC
AGGTGTCGCTGCCCACCGGAACCAAGTCCGTCGCCGGCGTCCGCCCCTCA
GGCGCCCTCAGCGACTACAGCAGCCGCGTCCTGTCGTCGCGCCCGTTTCA
GGACCTGCGCGGCGCCGCGAAGAACCTGTCGCGCCTCTTTCCGGAAGGCT
TCCAGGACGTTGCCGCCCAGGTCGACGAGATTGGCAGGGGCTTCCTGTCG
CAGGGCGGCACCCTGTTCGAGCAGCTGGGCTTCTACTATGTGGGGCCCAT
TGACGGCCACAAACTCCCTGTGCTCGTCAACGTGCTGCAAAACGTCCGCG
ACATGCCCGGCAACAAGCCCGTTTTGATTCACGTCAAGACCCGCAAGGGC
AAAGGCTACCCGCCGGCGGAGGCCGCCCTGGACAAGTACCACGGCGTCGC
CCGCTTTGACGTCGCTACGGGGAAGCAGCACAAGTCCGTCTCCAAGACCC
CTTCGTACACCTCCGTCTTTGCCAACGCACTCGTTGCGCATGCGCACAAG
GATCGCAAGATTCTCGCCATCACCGCGGCCATGCCCGGCGGCACGGGCTT
GAACGTTTTCGGAGAAGTTCATCCCACGCGCTGCCACGACGTCGGCATTG
CCGAGCAGCACGCCGTCACCATGGCCGCTGGCATGGCCTGCGAGGGCTTT
AAGCCGTTTTGCTGCATCTACTCCACCTTCTTGCAACGGGGCTATGACCA
ACTTGTGCATGACGTCGCCCTGCAAAAGCTGCCGGTGCGATTCATTCTCG
ATCGCGCCGGCCTTGTGGGGAACGACGGTCCCACGCACCACGGATCGTTT
GACCTGGCCTACATTGGCTGCATTCCGCACATGACCATCATGGCGCCCTC
CGACGAAATCGAGCTGCAGAACATGGTCGCCACCGCTCTCAACATAGACG
ATGGACCGTCTGTCGTGAGATACCCGCGTGGAGTGGGTGTCGGCTTGGAC
GTGATCAACTCCAAGTTTGGTGGCAACTATCCGGAGATGCCTGTAAAGGG
GCGTCCCGTGCCGATTGGGCGCGGCCGTATCATCCGTCGTATCGGCTCCA
TGAGCGGAAGGAAAGGATCTGTGGCCATCCTCAGTCTGGGAACGCGTCTG
ATGGAGGCCGTCAAAGCATCGGAAATGTTGCAGCAACTGGACATTGCCGT
CACGGTTGCCGATGCGCGCTTTATGAAACCGCTGGACCGCGATTTAATTC
GCGAATTGGCGTCCACACACGAGATTATGATCACAGTGGAGGAGGGTTCC
ATTGGTGGCTTTGGTGATCATGTGTTGCACTTCTTATCCCTCGAGGGTCT
GTTGGATGACGGCGCTGTCAGGTTTAGACCTATGGTTCTGCCGGACCGAT
TCATTGACCACGGCAGTCAATCGGAGCAGTACGAAGAGGCTGGTCTGAGC
GCCAAGCACATTCACGCCACCGCGATGCGCTTGTTGGGTCGCTCGGCGGA
GCTCATGCCCGTCTCGTCATCCATGGATCAGAGCAGCGCGGGCAACTGA back to topCoding sequence (CDS) from alignment at ScGOVlb_425:2197639..2199837+ >Gvermi12930.t1 ID=Gvermi12930.t1|Name=Gvermi12930.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2199bp|location=Sequence derived from alignment at ScGOVlb_425:2197639..2199837+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGCGCCCCCTCGCTGCCGCTTTCACCGTGCCGGTCGTGCCGCTGCCGCG CCACTCCTCCTTCGCCCCCGCGTCTCGCCCGCCTCGCCCTCCCCGCCACC GACATGTACCCCTCCGTGCCGCGCTCGACCCTTCCTCCTCCCCCTCGCAG CCCGCCTTCCGCGGCCCGCGCTCCACCCCGCTCCTCGACTCCATAGCCTC TCCCCAAGACTTGCGCCGCCTCCGCGCCACCGATCTCTCCGCACTCGCCC AAGAGCTGCGATGGGACGTGCTCCGCACCGTCGCCGCCACCGGCGGCCAC CTCGGCGCCTCGCTCGGCGTCATCGAACTCACCATCGCCCTCCACTACGT CTTCAACACCCCCCACGACCGCCTCATTTGGGATGTCTCCCACCAGGCCT ACCCGCACAAGATCCTCACTGGCCGCCGCAACCGCATGCACACGTTGCGC AAGAACGGCGGCCTGTCCGGTTTCACAAAGCGCGCCGAGAGCGAGTACGA CCCGTTCGGCGCCGGCCACTCCTCTACCAGCATTAGCGCCGGCTTGGGCA TGCAGGTCGCACGCGACGTCGCTGGCGTCCCGGGCCTGTCCATCGCCGTC ATCGGCGACGGCGCCATCACCGGCGGCCAGGCTTACGAGGCCATGAACAA TGCGGGCTACCTTAAGAATCGCTTCATCGTCATCCTCAACGACAACGCGC AGGTGTCGCTGCCCACCGGAACCAAGTCCGTCGCCGGCGTCCGCCCCTCA GGCGCCCTCAGCGACTACAGCAGCCGCGTCCTGTCGTCGCGCCCGTTTCA GGACCTGCGCGGCGCCGCGAAGAACCTGTCGCGCCTCTTTCCGGAAGGCT TCCAGGACGTTGCCGCCCAGGTCGACGAGATTGGCAGGGGCTTCCTGTCG CAGGGCGGCACCCTGTTCGAGCAGCTGGGCTTCTACTATGTGGGGCCCAT TGACGGCCACAAACTCCCTGTGCTCGTCAACGTGCTGCAAAACGTCCGCG ACATGCCCGGCAACAAGCCCGTTTTGATTCACGTCAAGACCCGCAAGGGC AAAGGCTACCCGCCGGCGGAGGCCGCCCTGGACAAGTACCACGGCGTCGC CCGCTTTGACGTCGCTACGGGGAAGCAGCACAAGTCCGTCTCCAAGACCC CTTCGTACACCTCCGTCTTTGCCAACGCACTCGTTGCGCATGCGCACAAG GATCGCAAGATTCTCGCCATCACCGCGGCCATGCCCGGCGGCACGGGCTT GAACGTTTTCGGAGAAGTTCATCCCACGCGCTGCCACGACGTCGGCATTG CCGAGCAGCACGCCGTCACCATGGCCGCTGGCATGGCCTGCGAGGGCTTT AAGCCGTTTTGCTGCATCTACTCCACCTTCTTGCAACGGGGCTATGACCA ACTTGTGCATGACGTCGCCCTGCAAAAGCTGCCGGTGCGATTCATTCTCG ATCGCGCCGGCCTTGTGGGGAACGACGGTCCCACGCACCACGGATCGTTT GACCTGGCCTACATTGGCTGCATTCCGCACATGACCATCATGGCGCCCTC CGACGAAATCGAGCTGCAGAACATGGTCGCCACCGCTCTCAACATAGACG ATGGACCGTCTGTCGTGAGATACCCGCGTGGAGTGGGTGTCGGCTTGGAC GTGATCAACTCCAAGTTTGGTGGCAACTATCCGGAGATGCCTGTAAAGGG GCGTCCCGTGCCGATTGGGCGCGGCCGTATCATCCGTCGTATCGGCTCCA TGAGCGGAAGGAAAGGATCTGTGGCCATCCTCAGTCTGGGAACGCGTCTG ATGGAGGCCGTCAAAGCATCGGAAATGTTGCAGCAACTGGACATTGCCGT CACGGTTGCCGATGCGCGCTTTATGAAACCGCTGGACCGCGATTTAATTC GCGAATTGGCGTCCACACACGAGATTATGATCACAGTGGAGGAGGGTTCC ATTGGTGGCTTTGGTGATCATGTGTTGCACTTCTTATCCCTCGAGGGTCT GTTGGATGACGGCGCTGTCAGGTTTAGACCTATGGTTCTGCCGGACCGAT TCATTGACCACGGCAGTCAATCGGAGCAGTACGAAGAGGCTGGTCTGAGC GCCAAGCACATTCACGCCACCGCGATGCGCTTGTTGGGTCGCTCGGCGGA GCTCATGCCCGTCTCGTCATCCATGGATCAGAGCAGCGCGGGCAACTGA back to top
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