Gvermi12921.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12921.t2
Unique NameGvermi12921.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length428
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2091847..2093130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12921Gvermi12921Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2091226..2093130 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12921.t2.start1Gvermi12921.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2091847..2091849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12921.t2.CDS1Gvermi12921.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2091847..2093130 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12921.t2.exon1Gvermi12921.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2091847..2093130 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12921.t2.stop1Gvermi12921.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2093128..2093130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12921.t2Gvermi12921.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2091847..2093130 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12921.t2 ID=Gvermi12921.t2|Name=Gvermi12921.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=428bp
MSAADEGAQRDASGAADEDADHPYRRAEAYDLSELDTPRTFAIVVKFLYC
EEIQFNYLTFDELVALATTAHRWSLTDLYHATFAYVTDQDLLAGGLGIRT
FLPLVAHEETPEPFRRYFCIAVGHHFDVLFPRLRAVREATPERTPALWRT
VFKQKMTSHVVHCITLYSRGLYDEYLLDVVLRYFERQVESSDDEVSGLLS
QLSWDDIDVGAVFSAGGASRAWSTRGVRLAALASYAPQTAALEVRIPWNV
PLQRLLKQAAWSFQTEHVACGPYVCYLHVRKGVGREVSLFVHIWDADNKP
LKDDVRHETVRVKCRATEANCACDSWKQWSDCSHGFLENLRFEGQLRRYP
GLGWSQFLEERRLDEWRHAHGPDCGLAITTVLQFVRPTRPFEGPPRRSRP
RAASPPRLQPPIHKKRSRSRMKLRDSR*
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spliced messenger RNA

>Gvermi12921.t2 ID=Gvermi12921.t2|Name=Gvermi12921.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at ScGOVlb_425:2091847..2093130+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCCGCGGACGAGGGCGCGCAGCGCGACGCGTCGGGCGCAGCCGA
CGAGGACGCCGACCACCCGTACCGGCGCGCAGAGGCGTACGACCTGTCGG
AGCTCGACACGCCGCGCACGTTTGCCATCGTGGTCAAGTTCCTGTACTGT
GAGGAGATCCAGTTCAACTACCTGACGTTCGACGAGCTGGTGGCGCTGGC
CACGACGGCGCACCGGTGGAGCCTGACCGACCTGTACCACGCGACGTTCG
CGTACGTGACGGACCAGGACCTGCTGGCGGGCGGGCTGGGCATCCGCACG
TTCCTGCCGCTGGTGGCGCACGAGGAGACGCCCGAGCCGTTTCGGCGGTA
CTTTTGCATTGCCGTGGGGCACCACTTTGACGTGCTGTTCCCGCGGCTGC
GCGCGGTGCGCGAGGCGACGCCGGAGCGCACGCCGGCGCTGTGGCGCACG
GTGTTCAAGCAGAAGATGACGAGCCACGTGGTTCACTGCATCACGCTGTA
CTCGCGCGGGCTGTACGACGAGTACCTGCTGGACGTGGTGCTGCGGTACT
TTGAGCGGCAGGTGGAGAGCTCGGACGACGAGGTGTCGGGGCTGCTGAGC
CAGCTGTCGTGGGACGACATCGACGTGGgggcggtgttcagcgcgggggg
ggcgagccgggcgtggagcacgcgcggcgtgcggctggcggcgCTGGCGT
CGTACGCGCCGCAGACGGCGGCGCTGGAGGTGCGCATCCCGTGGAACGTG
CCGCTGCAGCGGCTGCTCAAGCAGGCGGCGTGGAGCTTCCAGACGGAGCA
CGTGGCGTGCGGCCCGTACGTGTGCTACCTGCACGTGCGCAAGGGCGTCG
GGCGCGAGGTGTCGCTGTTCGTGCACATCTGGGACGCGGACAACAAGCCG
CTCAAGGACGACGTGCGCCACGAGACGGTGCGCGTCAAGTGCCGCGCCAC
GGAGGCCAACTGCGCGTGCGACAGCTGGAAGCAGTGGAGCGACTGCTCGC
ACGGCTTCCTGGAGAACCTGCGCTTCGAGGGGCAGCTGCGGCGCTACCCG
GGGCTGGGCTGGAGCCAGTTCCTCGAGGAGCGCCGCCTGGACGAGTGGCG
CCACGCGCACGGCCCCGACTGCGGGCTCGCCATCACCACCGTGCTGCAGT
TTGTGCGCCCCACGCGCCCGTTCGAGGGCccgccgcgccgcagccgcccg
cgcgccgccagcccgccgcgcctgcagccgccCATCCACAAGAAGCGCAG
CCGCTCGCGCATGAAGCTGCGCGACTCGCGTTAG
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protein sequence of Gvermi12921.t2

>Gvermi12921.t2 ID=Gvermi12921.t2|Name=Gvermi12921.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=428bp
MSAADEGAQRDASGAADEDADHPYRRAEAYDLSELDTPRTFAIVVKFLYC
EEIQFNYLTFDELVALATTAHRWSLTDLYHATFAYVTDQDLLAGGLGIRT
FLPLVAHEETPEPFRRYFCIAVGHHFDVLFPRLRAVREATPERTPALWRT
VFKQKMTSHVVHCITLYSRGLYDEYLLDVVLRYFERQVESSDDEVSGLLS
QLSWDDIDVGAVFSAGGASRAWSTRGVRLAALASYAPQTAALEVRIPWNV
PLQRLLKQAAWSFQTEHVACGPYVCYLHVRKGVGREVSLFVHIWDADNKP
LKDDVRHETVRVKCRATEANCACDSWKQWSDCSHGFLENLRFEGQLRRYP
GLGWSQFLEERRLDEWRHAHGPDCGLAITTVLQFVRPTRPFEGPPRRSRP
RAASPPRLQPPIHKKRSRSRMKLRDSR*
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mRNA from alignment at ScGOVlb_425:2091847..2093130+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12921.t2 ID=Gvermi12921.t2|Name=Gvermi12921.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at ScGOVlb_425:2091847..2093130+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGCCGCGGACGAGGGCGCGCAGCGCGACGCGTCGGGCGCAGCCGA
CGAGGACGCCGACCACCCGTACCGGCGCGCAGAGGCGTACGACCTGTCGG
AGCTCGACACGCCGCGCACGTTTGCCATCGTGGTCAAGTTCCTGTACTGT
GAGGAGATCCAGTTCAACTACCTGACGTTCGACGAGCTGGTGGCGCTGGC
CACGACGGCGCACCGGTGGAGCCTGACCGACCTGTACCACGCGACGTTCG
CGTACGTGACGGACCAGGACCTGCTGGCGGGCGGGCTGGGCATCCGCACG
TTCCTGCCGCTGGTGGCGCACGAGGAGACGCCCGAGCCGTTTCGGCGGTA
CTTTTGCATTGCCGTGGGGCACCACTTTGACGTGCTGTTCCCGCGGCTGC
GCGCGGTGCGCGAGGCGACGCCGGAGCGCACGCCGGCGCTGTGGCGCACG
GTGTTCAAGCAGAAGATGACGAGCCACGTGGTTCACTGCATCACGCTGTA
CTCGCGCGGGCTGTACGACGAGTACCTGCTGGACGTGGTGCTGCGGTACT
TTGAGCGGCAGGTGGAGAGCTCGGACGACGAGGTGTCGGGGCTGCTGAGC
CAGCTGTCGTGGGACGACATCGACGTGGgggcggtgttcagcgcgggggg
ggcgagccgggcgtggagcacgcgcggcgtgcggctggcggcgCTGGCGT
CGTACGCGCCGCAGACGGCGGCGCTGGAGGTGCGCATCCCGTGGAACGTG
CCGCTGCAGCGGCTGCTCAAGCAGGCGGCGTGGAGCTTCCAGACGGAGCA
CGTGGCGTGCGGCCCGTACGTGTGCTACCTGCACGTGCGCAAGGGCGTCG
GGCGCGAGGTGTCGCTGTTCGTGCACATCTGGGACGCGGACAACAAGCCG
CTCAAGGACGACGTGCGCCACGAGACGGTGCGCGTCAAGTGCCGCGCCAC
GGAGGCCAACTGCGCGTGCGACAGCTGGAAGCAGTGGAGCGACTGCTCGC
ACGGCTTCCTGGAGAACCTGCGCTTCGAGGGGCAGCTGCGGCGCTACCCG
GGGCTGGGCTGGAGCCAGTTCCTCGAGGAGCGCCGCCTGGACGAGTGGCG
CCACGCGCACGGCCCCGACTGCGGGCTCGCCATCACCACCGTGCTGCAGT
TTGTGCGCCCCACGCGCCCGTTCGAGGGCccgccgcgccgcagccgcccg
cgcgccgccagcccgccgcgcctgcagccgccCATCCACAAGAAGCGCAG
CCGCTCGCGCATGAAGCTGCGCGACTCGCGTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:2091847..2093130+

>Gvermi12921.t2 ID=Gvermi12921.t2|Name=Gvermi12921.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1284bp|location=Sequence derived from alignment at ScGOVlb_425:2091847..2093130+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGCCGCGGACGAGGGCGCGCAGCGCGACGCGTCGGGCGCAGCCGA
CGAGGACGCCGACCACCCGTACCGGCGCGCAGAGGCGTACGACCTGTCGG
AGCTCGACACGCCGCGCACGTTTGCCATCGTGGTCAAGTTCCTGTACTGT
GAGGAGATCCAGTTCAACTACCTGACGTTCGACGAGCTGGTGGCGCTGGC
CACGACGGCGCACCGGTGGAGCCTGACCGACCTGTACCACGCGACGTTCG
CGTACGTGACGGACCAGGACCTGCTGGCGGGCGGGCTGGGCATCCGCACG
TTCCTGCCGCTGGTGGCGCACGAGGAGACGCCCGAGCCGTTTCGGCGGTA
CTTTTGCATTGCCGTGGGGCACCACTTTGACGTGCTGTTCCCGCGGCTGC
GCGCGGTGCGCGAGGCGACGCCGGAGCGCACGCCGGCGCTGTGGCGCACG
GTGTTCAAGCAGAAGATGACGAGCCACGTGGTTCACTGCATCACGCTGTA
CTCGCGCGGGCTGTACGACGAGTACCTGCTGGACGTGGTGCTGCGGTACT
TTGAGCGGCAGGTGGAGAGCTCGGACGACGAGGTGTCGGGGCTGCTGAGC
CAGCTGTCGTGGGACGACATCGACGTGGgggcggtgttcagcgcgggggg
ggcgagccgggcgtggagcacgcgcggcgtgcggctggcggcgCTGGCGT
CGTACGCGCCGCAGACGGCGGCGCTGGAGGTGCGCATCCCGTGGAACGTG
CCGCTGCAGCGGCTGCTCAAGCAGGCGGCGTGGAGCTTCCAGACGGAGCA
CGTGGCGTGCGGCCCGTACGTGTGCTACCTGCACGTGCGCAAGGGCGTCG
GGCGCGAGGTGTCGCTGTTCGTGCACATCTGGGACGCGGACAACAAGCCG
CTCAAGGACGACGTGCGCCACGAGACGGTGCGCGTCAAGTGCCGCGCCAC
GGAGGCCAACTGCGCGTGCGACAGCTGGAAGCAGTGGAGCGACTGCTCGC
ACGGCTTCCTGGAGAACCTGCGCTTCGAGGGGCAGCTGCGGCGCTACCCG
GGGCTGGGCTGGAGCCAGTTCCTCGAGGAGCGCCGCCTGGACGAGTGGCG
CCACGCGCACGGCCCCGACTGCGGGCTCGCCATCACCACCGTGCTGCAGT
TTGTGCGCCCCACGCGCCCGTTCGAGGGCccgccgcgccgcagccgcccg
cgcgccgccagcccgccgcgcctgcagccgccCATCCACAAGAAGCGCAG
CCGCTCGCGCATGAAGCTGCGCGACTCGCGTTAG
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