Gvermi12923.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12923.t1
Unique NameGvermi12923.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length135
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2118103..2118581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_01315T0
Preferred nameDDX51
PFAMsDEAD,Helicase_C
Max annot lvl2759|Eukaryota
KEGG koko:K03264,ko:K14807
KEGG Pathwayko03008,map03008
GOsGO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360,GO:1990904
Evalue1.29e-18
EggNOG OGsCOG0513@1|root,KOG0350@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
COG categoryL
BRITEko00000,ko00001,ko01000,ko03009,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12923Gvermi12923Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2118103..2118581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12923.t1Gvermi12923.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2118103..2118581 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12923.t1.stop1Gvermi12923.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2118103..2118105 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12923.t1.CDS1Gvermi12923.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2118103..2118504 -
Gvermi12923.t1.CDS2Gvermi12923.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2118579..2118581 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12923.t1.exon1Gvermi12923.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2118103..2118504 -
Gvermi12923.t1.exon2Gvermi12923.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2118579..2118581 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12923.t1.intron1Gvermi12923.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 2118505..2118578 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12923.t1.start1Gvermi12923.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2118579..2118581 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12923.t1 ID=Gvermi12923.t1|Name=Gvermi12923.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=135bp
MTSGSDETRHSRTIDVILCAPTGSRKRLAYESPILQDLLDRKMRRLRAVV
VFPTRDLSAQVMCVFRALTQSTGILMLCIVNAASTAKEGLNVQKLEILIA
FPGQLVNHIRNGDYLNFGDVWYLLMDESDQLVEN*
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spliced messenger RNA

>Gvermi12923.t1 ID=Gvermi12923.t1|Name=Gvermi12923.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=405bp|location=Sequence derived from alignment at ScGOVlb_425:2118103..2118581- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCAGGTTCGGACGAAACCCGCCACAGCCGCACAATCGACGTTAT
TTTATGCGCTCCAACGGGGAGTAGAAAGAGGCTGGCGTATGAGTCACCAA
TCCTTCAGGACCTCCTCGACCGCAAAATGCGCCGCCTGCGTGCCGTGGTC
GTCTTCCCAACGCGAGATCTGTCGGCGCAGGTGATGTGCGTGTTTCGGGC
GCTCACGCAAAGCACTGGCATATTGATGCTCTGCATCGTGAACGCCGCTT
CCACGGCAAAAGAAGGCCTCAACGTTCAGAAATTGGAGATCCTAATCGCA
TTCCCAGGCCAGCTCGTGAACCACATTAGAAACGGCGACTACCTGAACTT
TGGCGACGTGTGGTACCTTTTGATGGATGAGTCGGACCAGTTGGTCGAAA
ACTAG
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protein sequence of Gvermi12923.t1

>Gvermi12923.t1 ID=Gvermi12923.t1|Name=Gvermi12923.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=135bp
MTSGSDETRHSRTIDVILCAPTGSRKRLAYESPILQDLLDRKMRRLRAVV
VFPTRDLSAQVMCVFRALTQSTGILMLCIVNAASTAKEGLNVQKLEILIA
FPGQLVNHIRNGDYLNFGDVWYLLMDESDQLVEN*
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mRNA from alignment at ScGOVlb_425:2118103..2118581-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12923.t1 ID=Gvermi12923.t1|Name=Gvermi12923.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=479bp|location=Sequence derived from alignment at ScGOVlb_425:2118103..2118581- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTATGCAAAGAGCCTTTCCCCGCGGTTTTCTCTCACCAGAAGTGTGC
TCGTTGACTTATTGCCATTGCTGTTAGACTTCAGGTTCGGACGAAACCCG
CCACAGCCGCACAATCGACGTTATTTTATGCGCTCCAACGGGGAGTAGAA
AGAGGCTGGCGTATGAGTCACCAATCCTTCAGGACCTCCTCGACCGCAAA
ATGCGCCGCCTGCGTGCCGTGGTCGTCTTCCCAACGCGAGATCTGTCGGC
GCAGGTGATGTGCGTGTTTCGGGCGCTCACGCAAAGCACTGGCATATTGA
TGCTCTGCATCGTGAACGCCGCTTCCACGGCAAAAGAAGGCCTCAACGTT
CAGAAATTGGAGATCCTAATCGCATTCCCAGGCCAGCTCGTGAACCACAT
TAGAAACGGCGACTACCTGAACTTTGGCGACGTGTGGTACCTTTTGATGG
ATGAGTCGGACCAGTTGGTCGAAAACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:2118103..2118581-

>Gvermi12923.t1 ID=Gvermi12923.t1|Name=Gvermi12923.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=405bp|location=Sequence derived from alignment at ScGOVlb_425:2118103..2118581- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTCAGGTTCGGACGAAACCCGCCACAGCCGCACAATCGACGTTAT
TTTATGCGCTCCAACGGGGAGTAGAAAGAGGCTGGCGTATGAGTCACCAA
TCCTTCAGGACCTCCTCGACCGCAAAATGCGCCGCCTGCGTGCCGTGGTC
GTCTTCCCAACGCGAGATCTGTCGGCGCAGGTGATGTGCGTGTTTCGGGC
GCTCACGCAAAGCACTGGCATATTGATGCTCTGCATCGTGAACGCCGCTT
CCACGGCAAAAGAAGGCCTCAACGTTCAGAAATTGGAGATCCTAATCGCA
TTCCCAGGCCAGCTCGTGAACCACATTAGAAACGGCGACTACCTGAACTT
TGGCGACGTGTGGTACCTTTTGATGGATGAGTCGGACCAGTTGGTCGAAA
ACTAG
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