Gvermi12846.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12846.t1
Unique Name	Gvermi12846.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	703

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1784872..1786980 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	91464.S7335_3776
PFAMs	Big_5,GSDH,Malectin,TIG
Max annot lvl	1117\|Cyanobacteria
Evalue	5.16e-49
EggNOG OGs	COG2133@1\|root,COG2374@1\|root,COG2931@1\|root,COG3055@1\|root,COG2133@2\|Bacteria,COG2374@2\|Bacteria,COG2931@2\|Bacteria,COG3055@2\|Bacteria,1G17Y@1117\|Cyanobacteria
Description	Glucose / Sorbosone dehydrogenase
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12846	Gvermi12846	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1784872..1786980 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12846.t1.start1	Gvermi12846.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1784872..1784874 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12846.t1.CDS1	Gvermi12846.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1784872..1786980 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12846.t1.exon1	Gvermi12846.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1784872..1786980 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12846.t1.stop1	Gvermi12846.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1786978..1786980 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12846.t1	Gvermi12846.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1784872..1786980 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1784872..1786980+
coding sequence from alignment at ScGOVlb_425:1784872..1786980+

mRNA sequence

>Gvermi12846.t1 ID=Gvermi12846.t1|Name=Gvermi12846.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=703bp
MHHLTLVFLFAALSVACAQHSSGDQHNGGFDHRAHSVPGPDQTVYDIDGS
GFETIHLDGIGSHSHFFEPGPPIVSGVINSFVWHRMDTNQQVCNTVQCDV
QLPVGTTEVSLTVVDNTGDTVSDSLQVTVLPRSALTEPPRIDALGPAEGP
AVGGNTVTIDGAYLYRDAKVFFGAQQALGVEHLDRGRITCMAPGGTGTVT
VTVQSSMGTSNGLSYNYQEGNNLPVRFKLNTWKNPDNSEFIVEEITCIVL
GRDHRYYMGSLLGTVTVAYVNRNLVVESKCTGAEMGPDRSITGIGYNPID
PYSRVFVAVNTHFHENKGFRWDNAAIEAIEVEADGCPKKGPTIISGLPTS
NHDHGIGSISFLADGSMLISSGSFTNAGVSKPGDGIGGVPENPLSAAILR
APYLRPGFNGNIKYDQYEDPATANKIEGDVEPYVTGIRNSFGMVRHSNGQ
TYITDNGPNTGFGLTSTSCTGEAPDAEAEDKLLRLVAGTYYGHPNRNRGR
TDPKQCIYKGLEEENGNGYMKPLGIMSSSTNGIIEYRANTFHGGLKENML
MSKVAFGAEGLVWRVEMEPNGHALKSQPYEFFDQSGVSLVEGLYGELVMP
QLKKYRVLALQPEEPSPSSISITSVHPSRGPKSGGTEVFITGHFLNAHDL
VVTFAGVPCKNIVDIKYQHIRCITPPGNGKVPVIATAGGARSKSYGHEFE
YM*

spliced messenger RNA

>Gvermi12846.t1 ID=Gvermi12846.t1|Name=Gvermi12846.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2109bp|location=Sequence derived from alignment at ScGOVlb_425:1784872..1786980+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCATTTGACGCTTGTTTTTCTCTTCGCGGCGCTTAGCGTCGCGTG
CGCGCAGCATTCTTCCGGCGATCAGCATAATGGTGGCTTTGACCATCGTG
CCCACTCTGTCCCCGGTCCCGACCAAACTGTGTACGACATTGACGGCTCC
GGCTTTGAAACCATTCACCTAGATGGGATTGGCTCTCACTCCCACTTCTT
TGAACCCGGACCCCCAATCGTCAGCGGAGTCATAAACTCCTTCGTTTGGC
ACAGGATGGACACCAACCAACAAGTGTGCAACACAGTGCAGTGCGACGTT
CAGCTTCCTGTCGGAACCACCGAGGTGTCGCTCACTGTCGTGGACAACAC
CGGCGACACCGTTTCTGACTCCTTGCAAGTCACCGTGTTGCCGAGAAGCG
CGCTCACTGAACCGCCGAGAATCGATGCACTCGGGCCTGCAGAGGGGCCT
GCCGTCGGAGGTAACACTGTTACCATTGACGGCGCCTACCTGTACCGCGA
CGCAAAGGTCTTCTTTGGAGCGCAGCAAGCGCTCGGAGTCGAGCACCTTG
ACCGCGGTCGTATCACCTGCATGGCGCCCGGAGGAACTGGAACCGTCACA
GTCACCGTTCAAAGTTCTATGGGCACGTCTAATGGCTTGTCCTACAACTA
TCAGGAGGGAAACAACCTTCCCGTTCGTTTCAAATTGAACACATGGAAGA
ATCCGGACAATTCCGAGTTCATCGTGGAGGAGATCACGTGTATCGTGCTC
GGGAGGGATCATCGATACTACATGGGTTCCCTACTTGGAACCGTTACCGT
CGCCTACGTTAACCGCAACCTGGTCGTCGAGTCCAAGTGCACGGGAGCCG
AAATGGGACCAGATCGTTCCATCACTGGCATTGGTTACAATCCCATCGAC
CCGTATTCTCGCGTATTTGTTGCTGTCAACACTCATTTCCACGAGAACAA
GGGCTTCAGATGGGATAATGCCGCCATTGAGGCGATAGAGGTCGAAGCTG
ATGGTTGTCCGAAAAAGGGGCCCACAATCATTTCCGGTCTGCCGACCTCA
AATCATGACCACGGCATCGGTTCTATTTCGTTTTTGGCTGACGGCAGCAT
GCTTATTTCCAGCGGTTCCTTTACTAATGCAGGCGTCAGTAAACCCGGAG
ACGGAATTGGTGGTGTTCCCGAAAACCCGCTTTCCGCCGCAATTCTGCGA
GCCCCGTACCTCCGACCAGGATTCAATGGCAACATAAAGTATGACCAGTA
CGAAGATCCCGCCACGGCTAACAAGATCGAAGGCGATGTGGAGCCGTACG
TCACCGGCATTCGTAACAGCTTTGGTATGGTTCGACACAGCAACGGTCAA
ACTTACATAACTGACAACGGCCCGAACACTGGATTTGGATTGACCAGTAC
TTCATGCACAGGAGAAGCACCCGACGCAGAGGCAGAGGACAAACTGCTGA
GGTTGGTCGCGGGAACCTATTACGGTCATCCAAACCGTAATCGTGGCCGC
ACCGATCCGAAGCAGTGTATTTACAAGGGTCTTGAAGAAGAAAATGGAAA
TGGCTACATGAAGCCGCTTGGTATAATGTCGTCATCGACAAACGGAATCA
TAGAATACCGCGCCAACACCTTCCACGGTGGGCTGAAGGAGAACATGCTT
ATGAGCAAAGTGGCATTTGGCGCTGAAGGTTTGGTGTGGCGAGTTGAAAT
GGAACCGAACGGACATGCGCTGAAGAGCCAGCCGTATGAGTTCTTCGACC
AGAGCGGTGTGTCACTTGTTGAGGGCCTGTATGGAGAGCTTGTCATGCCT
CAACTGAAGAAATATCGCGTCCTGGCTCTGCAACCCGAAGAACCCAGTCC
GTCGTCAATTTCGATCACATCAGTGCACCCAAGCCGTGGACCGAAGTCTG
GAGGCACCGAGGTGTTTATCACTGGACACTTTTTGAATGCCCATGACTTG
GTGGTGACTTTTGCTGGCGTCCCGTGCAAGAACATTGTGGATATCAAGTA
TCAACATATACGGTGCATCACCCCCCCTGGAAACGGAAAGGTTCCGGTGA
TCGCAACGGCCGGCGGCGCGAGGTCCAAGAGTTACGGCCACGAATTCGAA
TACATGTAG

protein sequence of Gvermi12846.t1

>Gvermi12846.t1 ID=Gvermi12846.t1|Name=Gvermi12846.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=703bp
MHHLTLVFLFAALSVACAQHSSGDQHNGGFDHRAHSVPGPDQTVYDIDGS
GFETIHLDGIGSHSHFFEPGPPIVSGVINSFVWHRMDTNQQVCNTVQCDV
QLPVGTTEVSLTVVDNTGDTVSDSLQVTVLPRSALTEPPRIDALGPAEGP
AVGGNTVTIDGAYLYRDAKVFFGAQQALGVEHLDRGRITCMAPGGTGTVT
VTVQSSMGTSNGLSYNYQEGNNLPVRFKLNTWKNPDNSEFIVEEITCIVL
GRDHRYYMGSLLGTVTVAYVNRNLVVESKCTGAEMGPDRSITGIGYNPID
PYSRVFVAVNTHFHENKGFRWDNAAIEAIEVEADGCPKKGPTIISGLPTS
NHDHGIGSISFLADGSMLISSGSFTNAGVSKPGDGIGGVPENPLSAAILR
APYLRPGFNGNIKYDQYEDPATANKIEGDVEPYVTGIRNSFGMVRHSNGQ
TYITDNGPNTGFGLTSTSCTGEAPDAEAEDKLLRLVAGTYYGHPNRNRGR
TDPKQCIYKGLEEENGNGYMKPLGIMSSSTNGIIEYRANTFHGGLKENML
MSKVAFGAEGLVWRVEMEPNGHALKSQPYEFFDQSGVSLVEGLYGELVMP
QLKKYRVLALQPEEPSPSSISITSVHPSRGPKSGGTEVFITGHFLNAHDL
VVTFAGVPCKNIVDIKYQHIRCITPPGNGKVPVIATAGGARSKSYGHEFE
YM*

mRNA from alignment at ScGOVlb_425:1784872..1786980+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12846.t1 ID=Gvermi12846.t1|Name=Gvermi12846.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2109bp|location=Sequence derived from alignment at ScGOVlb_425:1784872..1786980+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATCATTTGACGCTTGTTTTTCTCTTCGCGGCGCTTAGCGTCGCGTG
CGCGCAGCATTCTTCCGGCGATCAGCATAATGGTGGCTTTGACCATCGTG
CCCACTCTGTCCCCGGTCCCGACCAAACTGTGTACGACATTGACGGCTCC
GGCTTTGAAACCATTCACCTAGATGGGATTGGCTCTCACTCCCACTTCTT
TGAACCCGGACCCCCAATCGTCAGCGGAGTCATAAACTCCTTCGTTTGGC
ACAGGATGGACACCAACCAACAAGTGTGCAACACAGTGCAGTGCGACGTT
CAGCTTCCTGTCGGAACCACCGAGGTGTCGCTCACTGTCGTGGACAACAC
CGGCGACACCGTTTCTGACTCCTTGCAAGTCACCGTGTTGCCGAGAAGCG
CGCTCACTGAACCGCCGAGAATCGATGCACTCGGGCCTGCAGAGGGGCCT
GCCGTCGGAGGTAACACTGTTACCATTGACGGCGCCTACCTGTACCGCGA
CGCAAAGGTCTTCTTTGGAGCGCAGCAAGCGCTCGGAGTCGAGCACCTTG
ACCGCGGTCGTATCACCTGCATGGCGCCCGGAGGAACTGGAACCGTCACA
GTCACCGTTCAAAGTTCTATGGGCACGTCTAATGGCTTGTCCTACAACTA
TCAGGAGGGAAACAACCTTCCCGTTCGTTTCAAATTGAACACATGGAAGA
ATCCGGACAATTCCGAGTTCATCGTGGAGGAGATCACGTGTATCGTGCTC
GGGAGGGATCATCGATACTACATGGGTTCCCTACTTGGAACCGTTACCGT
CGCCTACGTTAACCGCAACCTGGTCGTCGAGTCCAAGTGCACGGGAGCCG
AAATGGGACCAGATCGTTCCATCACTGGCATTGGTTACAATCCCATCGAC
CCGTATTCTCGCGTATTTGTTGCTGTCAACACTCATTTCCACGAGAACAA
GGGCTTCAGATGGGATAATGCCGCCATTGAGGCGATAGAGGTCGAAGCTG
ATGGTTGTCCGAAAAAGGGGCCCACAATCATTTCCGGTCTGCCGACCTCA
AATCATGACCACGGCATCGGTTCTATTTCGTTTTTGGCTGACGGCAGCAT
GCTTATTTCCAGCGGTTCCTTTACTAATGCAGGCGTCAGTAAACCCGGAG
ACGGAATTGGTGGTGTTCCCGAAAACCCGCTTTCCGCCGCAATTCTGCGA
GCCCCGTACCTCCGACCAGGATTCAATGGCAACATAAAGTATGACCAGTA
CGAAGATCCCGCCACGGCTAACAAGATCGAAGGCGATGTGGAGCCGTACG
TCACCGGCATTCGTAACAGCTTTGGTATGGTTCGACACAGCAACGGTCAA
ACTTACATAACTGACAACGGCCCGAACACTGGATTTGGATTGACCAGTAC
TTCATGCACAGGAGAAGCACCCGACGCAGAGGCAGAGGACAAACTGCTGA
GGTTGGTCGCGGGAACCTATTACGGTCATCCAAACCGTAATCGTGGCCGC
ACCGATCCGAAGCAGTGTATTTACAAGGGTCTTGAAGAAGAAAATGGAAA
TGGCTACATGAAGCCGCTTGGTATAATGTCGTCATCGACAAACGGAATCA
TAGAATACCGCGCCAACACCTTCCACGGTGGGCTGAAGGAGAACATGCTT
ATGAGCAAAGTGGCATTTGGCGCTGAAGGTTTGGTGTGGCGAGTTGAAAT
GGAACCGAACGGACATGCGCTGAAGAGCCAGCCGTATGAGTTCTTCGACC
AGAGCGGTGTGTCACTTGTTGAGGGCCTGTATGGAGAGCTTGTCATGCCT
CAACTGAAGAAATATCGCGTCCTGGCTCTGCAACCCGAAGAACCCAGTCC
GTCGTCAATTTCGATCACATCAGTGCACCCAAGCCGTGGACCGAAGTCTG
GAGGCACCGAGGTGTTTATCACTGGACACTTTTTGAATGCCCATGACTTG
GTGGTGACTTTTGCTGGCGTCCCGTGCAAGAACATTGTGGATATCAAGTA
TCAACATATACGGTGCATCACCCCCCCTGGAAACGGAAAGGTTCCGGTGA
TCGCAACGGCCGGCGGCGCGAGGTCCAAGAGTTACGGCCACGAATTCGAA
TACATGTAG

Coding sequence (CDS) from alignment at ScGOVlb_425:1784872..1786980+

>Gvermi12846.t1 ID=Gvermi12846.t1|Name=Gvermi12846.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2109bp|location=Sequence derived from alignment at ScGOVlb_425:1784872..1786980+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATCATTTGACGCTTGTTTTTCTCTTCGCGGCGCTTAGCGTCGCGTG
CGCGCAGCATTCTTCCGGCGATCAGCATAATGGTGGCTTTGACCATCGTG
CCCACTCTGTCCCCGGTCCCGACCAAACTGTGTACGACATTGACGGCTCC
GGCTTTGAAACCATTCACCTAGATGGGATTGGCTCTCACTCCCACTTCTT
TGAACCCGGACCCCCAATCGTCAGCGGAGTCATAAACTCCTTCGTTTGGC
ACAGGATGGACACCAACCAACAAGTGTGCAACACAGTGCAGTGCGACGTT
CAGCTTCCTGTCGGAACCACCGAGGTGTCGCTCACTGTCGTGGACAACAC
CGGCGACACCGTTTCTGACTCCTTGCAAGTCACCGTGTTGCCGAGAAGCG
CGCTCACTGAACCGCCGAGAATCGATGCACTCGGGCCTGCAGAGGGGCCT
GCCGTCGGAGGTAACACTGTTACCATTGACGGCGCCTACCTGTACCGCGA
CGCAAAGGTCTTCTTTGGAGCGCAGCAAGCGCTCGGAGTCGAGCACCTTG
ACCGCGGTCGTATCACCTGCATGGCGCCCGGAGGAACTGGAACCGTCACA
GTCACCGTTCAAAGTTCTATGGGCACGTCTAATGGCTTGTCCTACAACTA
TCAGGAGGGAAACAACCTTCCCGTTCGTTTCAAATTGAACACATGGAAGA
ATCCGGACAATTCCGAGTTCATCGTGGAGGAGATCACGTGTATCGTGCTC
GGGAGGGATCATCGATACTACATGGGTTCCCTACTTGGAACCGTTACCGT
CGCCTACGTTAACCGCAACCTGGTCGTCGAGTCCAAGTGCACGGGAGCCG
AAATGGGACCAGATCGTTCCATCACTGGCATTGGTTACAATCCCATCGAC
CCGTATTCTCGCGTATTTGTTGCTGTCAACACTCATTTCCACGAGAACAA
GGGCTTCAGATGGGATAATGCCGCCATTGAGGCGATAGAGGTCGAAGCTG
ATGGTTGTCCGAAAAAGGGGCCCACAATCATTTCCGGTCTGCCGACCTCA
AATCATGACCACGGCATCGGTTCTATTTCGTTTTTGGCTGACGGCAGCAT
GCTTATTTCCAGCGGTTCCTTTACTAATGCAGGCGTCAGTAAACCCGGAG
ACGGAATTGGTGGTGTTCCCGAAAACCCGCTTTCCGCCGCAATTCTGCGA
GCCCCGTACCTCCGACCAGGATTCAATGGCAACATAAAGTATGACCAGTA
CGAAGATCCCGCCACGGCTAACAAGATCGAAGGCGATGTGGAGCCGTACG
TCACCGGCATTCGTAACAGCTTTGGTATGGTTCGACACAGCAACGGTCAA
ACTTACATAACTGACAACGGCCCGAACACTGGATTTGGATTGACCAGTAC
TTCATGCACAGGAGAAGCACCCGACGCAGAGGCAGAGGACAAACTGCTGA
GGTTGGTCGCGGGAACCTATTACGGTCATCCAAACCGTAATCGTGGCCGC
ACCGATCCGAAGCAGTGTATTTACAAGGGTCTTGAAGAAGAAAATGGAAA
TGGCTACATGAAGCCGCTTGGTATAATGTCGTCATCGACAAACGGAATCA
TAGAATACCGCGCCAACACCTTCCACGGTGGGCTGAAGGAGAACATGCTT
ATGAGCAAAGTGGCATTTGGCGCTGAAGGTTTGGTGTGGCGAGTTGAAAT
GGAACCGAACGGACATGCGCTGAAGAGCCAGCCGTATGAGTTCTTCGACC
AGAGCGGTGTGTCACTTGTTGAGGGCCTGTATGGAGAGCTTGTCATGCCT
CAACTGAAGAAATATCGCGTCCTGGCTCTGCAACCCGAAGAACCCAGTCC
GTCGTCAATTTCGATCACATCAGTGCACCCAAGCCGTGGACCGAAGTCTG
GAGGCACCGAGGTGTTTATCACTGGACACTTTTTGAATGCCCATGACTTG
GTGGTGACTTTTGCTGGCGTCCCGTGCAAGAACATTGTGGATATCAAGTA
TCAACATATACGGTGCATCACCCCCCCTGGAAACGGAAAGGTTCCGGTGA
TCGCAACGGCCGGCGGCGCGAGGTCCAAGAGTTACGGCCACGAATTCGAA
TACATGTAG