Gvermi12934.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12934.t1
Unique NameGvermi12934.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length812
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2226561..2228996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704294.1
PFAMsDUF295,F-box,RHD3
Max annot lvl2759|Eukaryota
Evalue3.35e-128
EggNOG OGsKOG2203@1|root,KOG2203@2759|Eukaryota
DescriptionGTP binding
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12934Gvermi12934Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2226561..2228996 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12934.t1.start1Gvermi12934.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2226561..2226563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12934.t1.CDS1Gvermi12934.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2226561..2228996 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12934.t1.exon1Gvermi12934.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2226561..2228996 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12934.t1.stop1Gvermi12934.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2228994..2228996 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12934.t1Gvermi12934.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2226561..2228996 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12934.t1 ID=Gvermi12934.t1|Name=Gvermi12934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=812bp
MTSAISDDATAVEAEASHMVQVVNYEQQFNDDLETFLRAKRISQLGFDYN
VTAIMGPQSSGKSTLMNMLFGTKFPTMDSGGGRYQVTQGVWLGRDKEAGI
LVMDLEGTDSRERGEDAATYERKSALFALALAEVLVVNVWIHDVGRNNAS
NMPLLRTIMELDLQLFFGAAGSDAGTKRMPKTKLLFVIRDYDSTPFEKLC
ASLREDLDNIWNTINKPEAALGTPITDYFDLDFEALPHKVYCPMEFEEKV
GELKKRFHGGDVFKKDYSRGVAADGFSEYARSVWETIRANKELDIPSQKE
MLAHVRCEQIAKDVFFIFENAIGLLKGDLLPADRSMPTIVPCLFSTLLEN
CDSALSKYNEGASRYSAAVAEMKADDVRAHLSSECKMLFDSQITAATDAA
IKEFQEIVKGSENGSVSEPWLNWNEHSKTAMENAMKVFDDACKTTELCKS
VSDANAMKAHPLGFAITSSMIARKRLEKTLETELKRETARVLSESRAHCL
GTFRSAFKAPMTTVLENVPDDMWSRTSEVADVSWEATAREAKTVYGENGL
ALEEDKLKNLEEELKNECRDSAVNDIKAAIGTPSNMLLRMMKRFEDSFRF
DERGVPRHFGPSEDIEALFVAAREKGEKLVELMSEVRLQGSLGGATTTAS
RSIGKKGSQVTIIDSNAQADLRDKLKRQSGAIFMEAKRAQEAARITTKVP
IWLIGVVLILGWNEFMAVLRNPLLLMLTIIVVPMVYVGYTLDAPTYLAPA
VIATLKPMVDQAKDFLEQTTSAPVSQHAAEPAPVCKSPSSESTVVSANHT
ESAIVPEEKTS*
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spliced messenger RNA

>Gvermi12934.t1 ID=Gvermi12934.t1|Name=Gvermi12934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2436bp|location=Sequence derived from alignment at ScGOVlb_425:2226561..2228996+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCAGCAATTTCTGATGATGCAACTGCCGTTGAGGCTGAAGCCTC
TCACATGGTGCAGGTGGTTAACTATGAGCAGCAATTCAATGACGATTTGG
AGACATTTCTGCGCGCCAAGCGCATCTCGCAATTGGGTTTCGACTATAAC
GTGACAGCAATTATGGGGCCTCAGTCTTCCGGAAAGTCTACTTTGATGAA
CATGCTTTTTGGAACGAAGTTTCCTACTATGGACAGTGGTGGTGGTCGTT
ACCAAGTTACACAGGGTGTGTGGCTTGGTCGTGATAAAGAAGCGGGCATT
CTCGTCATGGATTTGGAAGGAACGGATTCACGAGAAAGAGGGGAAGATGC
CGCTACATACGAAAGAAAAAGTGCACTGTTCGCTTTGGCACTTGCGGAGG
TGCTTGTGGTGAATGTGTGGATCCACGACGTTGGTCGAAACAACGCGTCT
AACATGCCCTTACTGAGAACAATCATGGAGCTTGACCTGCAGTTGTTCTT
TGGCGCCGCTGGATCGGATGCTGGAACAAAGCGCATGCCAAAGACAAAGC
TGCTCTTTGTTATCCGCGATTACGATTCTACCCCCTTTGAGAAGCTGTGC
GCTTCCCTTCGTGAGGACTTGGATAACATCTGGAATACAATCAATAAACC
AGAAGCGGCCTTGGGCACTCCCATTACCGATTATTTTGACCTTGACTTTG
AGGCATTACCTCACAAGGTGTATTGTCCCATGGAGTTCGAAGAGAAAGTA
GGAGAACTGAAGAAGCGTTTCCATGGCGGCGATGTCTTTAAGAAGGATTA
TAGCCGTGGGGTTGCCGCCGATGGGTTTTCAGAATATGCAAGGTCCGTAT
GGGAAACCATTCGTGCAAATAAGGAGCTTGATATTCCCTCGCAGAAAGAA
ATGCTGGCTCACGTTCGATGTGAACAGATCGCCAAGGATGTATTTTTCAT
CTTTGAGAACGCAATAGGATTGCTCAAGGGGGATCTTTTGCCTGCGGATC
GTTCCATGCCGACGATTGTGCCCTGTCTATTCAGCACCCTTTTGGAAAAC
TGTGATAGCGCGCTGAGCAAATACAATGAAGGGGCTTCACGCTACTCGGC
AGCTGTAGCCGAGATGAAGGCAGATGACGTTCGCGCTCACCTTTCGTCCG
AGTGCAAAATGCTGTTCGATTCTCAAATTACTGCCGCAACCGATGCGGCC
ATAAAGGAATTCCAGGAAATTGTTAAAGGAAGCGAGAACGGATCAGTGTC
TGAGCCGTGGCTCAATTGGAATGAACACTCGAAGACCGCCATGGAGAATG
CGATGAAAGTCTTTGATGATGCGTGCAAGACGACTGAGTTATGCAAGAGC
GTTTCGGATGCCAATGCGATGAAGGCCCATCCCCTTGGATTTGCAATTAC
TTCATCGATGATTGCGCGAAAGAGACTGGAAAAGACTTTAGAAACTGAGC
TGAAGCGTGAGACGGCCAGGGTTCTTTCGGAATCGCGTGCGCATTGCTTG
GGAACCTTCCGATCTGCTTTTAAGGCTCCGATGACAACTGTCTTAGAAAA
TGTGCCTGACGATATGTGGAGCCGCACTTCCGAGGTCGCTGATGTTTCGT
GGGAAGCTACGGCGAGGGAGGCCAAGACTGTCTATGGTGAAAATGGGCTC
GCACTGGAGGAGGACAAATTGAAGAACTTAGAAGAGGAGTTGAAGAACGA
GTGTCGGGACTCAGCTGTTAATGATATCAAGGCTGCAATCGGCACACCGT
CCAACATGTTGTTGAGAATGATGAAGCGCTTCGAAGATTCCTTCCGCTTT
GACGAAAGAGGGGTGCCTCGGCATTTCGGACCGAGTGAGGACATTGAAGC
GCTGTTCGTCGCTGCGAGAGAAAAAGGAGAGAAACTTGTCGAATTAATGT
CGGAAGTGCGATTGCAAGGATCTCTTGGTGGTGCGACAACCACTGCCAGC
CGGAGCATTGGCAAGAAAGGAAGCCAGGTGACTATTATTGACTCAAACGC
GCAGGCCGACCTCAGGGACAAGCTCAAGCGTCAGAGTGGAGCCATTTTCA
TGGAGGCAAAACGTGCGCAAGAAGCTGCAAGAATCACAACCAAGGTTCCG
ATCTGGCTCATCGGCGTGGTACTGATTCTCGGGTGGAACGAATTCATGGC
TGTTTTGCGGAATCCGTTGTTGCTGATGCTCACGATAATTGTTGTACCCA
TGGTGTACGTGGGATACACCCTGGATGCTCCTACGTATCTGGCGCCCGCG
GTGATAGCCACTCTGAAGCCCATGGTGGATCAAGCAAAAGACTTTTTAGA
ACAGACCACCAGCGCTCCGGTTTCCCAGCACGCCGCAGAGCCCGCGCCAG
TTTGCAAGTCTCCGTCAAGCGAGAGTACCGTGGTGTCGGCAAACCATACA
GAGAGTGCGATAGTCCCGGAGGAGAAAACAAGCTGA
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protein sequence of Gvermi12934.t1

>Gvermi12934.t1 ID=Gvermi12934.t1|Name=Gvermi12934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=812bp
MTSAISDDATAVEAEASHMVQVVNYEQQFNDDLETFLRAKRISQLGFDYN
VTAIMGPQSSGKSTLMNMLFGTKFPTMDSGGGRYQVTQGVWLGRDKEAGI
LVMDLEGTDSRERGEDAATYERKSALFALALAEVLVVNVWIHDVGRNNAS
NMPLLRTIMELDLQLFFGAAGSDAGTKRMPKTKLLFVIRDYDSTPFEKLC
ASLREDLDNIWNTINKPEAALGTPITDYFDLDFEALPHKVYCPMEFEEKV
GELKKRFHGGDVFKKDYSRGVAADGFSEYARSVWETIRANKELDIPSQKE
MLAHVRCEQIAKDVFFIFENAIGLLKGDLLPADRSMPTIVPCLFSTLLEN
CDSALSKYNEGASRYSAAVAEMKADDVRAHLSSECKMLFDSQITAATDAA
IKEFQEIVKGSENGSVSEPWLNWNEHSKTAMENAMKVFDDACKTTELCKS
VSDANAMKAHPLGFAITSSMIARKRLEKTLETELKRETARVLSESRAHCL
GTFRSAFKAPMTTVLENVPDDMWSRTSEVADVSWEATAREAKTVYGENGL
ALEEDKLKNLEEELKNECRDSAVNDIKAAIGTPSNMLLRMMKRFEDSFRF
DERGVPRHFGPSEDIEALFVAAREKGEKLVELMSEVRLQGSLGGATTTAS
RSIGKKGSQVTIIDSNAQADLRDKLKRQSGAIFMEAKRAQEAARITTKVP
IWLIGVVLILGWNEFMAVLRNPLLLMLTIIVVPMVYVGYTLDAPTYLAPA
VIATLKPMVDQAKDFLEQTTSAPVSQHAAEPAPVCKSPSSESTVVSANHT
ESAIVPEEKTS*
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mRNA from alignment at ScGOVlb_425:2226561..2228996+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12934.t1 ID=Gvermi12934.t1|Name=Gvermi12934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2436bp|location=Sequence derived from alignment at ScGOVlb_425:2226561..2228996+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTCAGCAATTTCTGATGATGCAACTGCCGTTGAGGCTGAAGCCTC TCACATGGTGCAGGTGGTTAACTATGAGCAGCAATTCAATGACGATTTGG AGACATTTCTGCGCGCCAAGCGCATCTCGCAATTGGGTTTCGACTATAAC GTGACAGCAATTATGGGGCCTCAGTCTTCCGGAAAGTCTACTTTGATGAA CATGCTTTTTGGAACGAAGTTTCCTACTATGGACAGTGGTGGTGGTCGTT ACCAAGTTACACAGGGTGTGTGGCTTGGTCGTGATAAAGAAGCGGGCATT CTCGTCATGGATTTGGAAGGAACGGATTCACGAGAAAGAGGGGAAGATGC CGCTACATACGAAAGAAAAAGTGCACTGTTCGCTTTGGCACTTGCGGAGG TGCTTGTGGTGAATGTGTGGATCCACGACGTTGGTCGAAACAACGCGTCT AACATGCCCTTACTGAGAACAATCATGGAGCTTGACCTGCAGTTGTTCTT TGGCGCCGCTGGATCGGATGCTGGAACAAAGCGCATGCCAAAGACAAAGC TGCTCTTTGTTATCCGCGATTACGATTCTACCCCCTTTGAGAAGCTGTGC GCTTCCCTTCGTGAGGACTTGGATAACATCTGGAATACAATCAATAAACC AGAAGCGGCCTTGGGCACTCCCATTACCGATTATTTTGACCTTGACTTTG AGGCATTACCTCACAAGGTGTATTGTCCCATGGAGTTCGAAGAGAAAGTA GGAGAACTGAAGAAGCGTTTCCATGGCGGCGATGTCTTTAAGAAGGATTA TAGCCGTGGGGTTGCCGCCGATGGGTTTTCAGAATATGCAAGGTCCGTAT GGGAAACCATTCGTGCAAATAAGGAGCTTGATATTCCCTCGCAGAAAGAA ATGCTGGCTCACGTTCGATGTGAACAGATCGCCAAGGATGTATTTTTCAT CTTTGAGAACGCAATAGGATTGCTCAAGGGGGATCTTTTGCCTGCGGATC GTTCCATGCCGACGATTGTGCCCTGTCTATTCAGCACCCTTTTGGAAAAC TGTGATAGCGCGCTGAGCAAATACAATGAAGGGGCTTCACGCTACTCGGC AGCTGTAGCCGAGATGAAGGCAGATGACGTTCGCGCTCACCTTTCGTCCG AGTGCAAAATGCTGTTCGATTCTCAAATTACTGCCGCAACCGATGCGGCC ATAAAGGAATTCCAGGAAATTGTTAAAGGAAGCGAGAACGGATCAGTGTC TGAGCCGTGGCTCAATTGGAATGAACACTCGAAGACCGCCATGGAGAATG CGATGAAAGTCTTTGATGATGCGTGCAAGACGACTGAGTTATGCAAGAGC GTTTCGGATGCCAATGCGATGAAGGCCCATCCCCTTGGATTTGCAATTAC TTCATCGATGATTGCGCGAAAGAGACTGGAAAAGACTTTAGAAACTGAGC TGAAGCGTGAGACGGCCAGGGTTCTTTCGGAATCGCGTGCGCATTGCTTG GGAACCTTCCGATCTGCTTTTAAGGCTCCGATGACAACTGTCTTAGAAAA TGTGCCTGACGATATGTGGAGCCGCACTTCCGAGGTCGCTGATGTTTCGT GGGAAGCTACGGCGAGGGAGGCCAAGACTGTCTATGGTGAAAATGGGCTC GCACTGGAGGAGGACAAATTGAAGAACTTAGAAGAGGAGTTGAAGAACGA GTGTCGGGACTCAGCTGTTAATGATATCAAGGCTGCAATCGGCACACCGT CCAACATGTTGTTGAGAATGATGAAGCGCTTCGAAGATTCCTTCCGCTTT GACGAAAGAGGGGTGCCTCGGCATTTCGGACCGAGTGAGGACATTGAAGC GCTGTTCGTCGCTGCGAGAGAAAAAGGAGAGAAACTTGTCGAATTAATGT CGGAAGTGCGATTGCAAGGATCTCTTGGTGGTGCGACAACCACTGCCAGC CGGAGCATTGGCAAGAAAGGAAGCCAGGTGACTATTATTGACTCAAACGC GCAGGCCGACCTCAGGGACAAGCTCAAGCGTCAGAGTGGAGCCATTTTCA TGGAGGCAAAACGTGCGCAAGAAGCTGCAAGAATCACAACCAAGGTTCCG ATCTGGCTCATCGGCGTGGTACTGATTCTCGGGTGGAACGAATTCATGGC TGTTTTGCGGAATCCGTTGTTGCTGATGCTCACGATAATTGTTGTACCCA TGGTGTACGTGGGATACACCCTGGATGCTCCTACGTATCTGGCGCCCGCG GTGATAGCCACTCTGAAGCCCATGGTGGATCAAGCAAAAGACTTTTTAGA ACAGACCACCAGCGCTCCGGTTTCCCAGCACGCCGCAGAGCCCGCGCCAG TTTGCAAGTCTCCGTCAAGCGAGAGTACCGTGGTGTCGGCAAACCATACA GAGAGTGCGATAGTCCCGGAGGAGAAAACAAGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:2226561..2228996+

>Gvermi12934.t1 ID=Gvermi12934.t1|Name=Gvermi12934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2436bp|location=Sequence derived from alignment at ScGOVlb_425:2226561..2228996+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTCAGCAATTTCTGATGATGCAACTGCCGTTGAGGCTGAAGCCTC
TCACATGGTGCAGGTGGTTAACTATGAGCAGCAATTCAATGACGATTTGG
AGACATTTCTGCGCGCCAAGCGCATCTCGCAATTGGGTTTCGACTATAAC
GTGACAGCAATTATGGGGCCTCAGTCTTCCGGAAAGTCTACTTTGATGAA
CATGCTTTTTGGAACGAAGTTTCCTACTATGGACAGTGGTGGTGGTCGTT
ACCAAGTTACACAGGGTGTGTGGCTTGGTCGTGATAAAGAAGCGGGCATT
CTCGTCATGGATTTGGAAGGAACGGATTCACGAGAAAGAGGGGAAGATGC
CGCTACATACGAAAGAAAAAGTGCACTGTTCGCTTTGGCACTTGCGGAGG
TGCTTGTGGTGAATGTGTGGATCCACGACGTTGGTCGAAACAACGCGTCT
AACATGCCCTTACTGAGAACAATCATGGAGCTTGACCTGCAGTTGTTCTT
TGGCGCCGCTGGATCGGATGCTGGAACAAAGCGCATGCCAAAGACAAAGC
TGCTCTTTGTTATCCGCGATTACGATTCTACCCCCTTTGAGAAGCTGTGC
GCTTCCCTTCGTGAGGACTTGGATAACATCTGGAATACAATCAATAAACC
AGAAGCGGCCTTGGGCACTCCCATTACCGATTATTTTGACCTTGACTTTG
AGGCATTACCTCACAAGGTGTATTGTCCCATGGAGTTCGAAGAGAAAGTA
GGAGAACTGAAGAAGCGTTTCCATGGCGGCGATGTCTTTAAGAAGGATTA
TAGCCGTGGGGTTGCCGCCGATGGGTTTTCAGAATATGCAAGGTCCGTAT
GGGAAACCATTCGTGCAAATAAGGAGCTTGATATTCCCTCGCAGAAAGAA
ATGCTGGCTCACGTTCGATGTGAACAGATCGCCAAGGATGTATTTTTCAT
CTTTGAGAACGCAATAGGATTGCTCAAGGGGGATCTTTTGCCTGCGGATC
GTTCCATGCCGACGATTGTGCCCTGTCTATTCAGCACCCTTTTGGAAAAC
TGTGATAGCGCGCTGAGCAAATACAATGAAGGGGCTTCACGCTACTCGGC
AGCTGTAGCCGAGATGAAGGCAGATGACGTTCGCGCTCACCTTTCGTCCG
AGTGCAAAATGCTGTTCGATTCTCAAATTACTGCCGCAACCGATGCGGCC
ATAAAGGAATTCCAGGAAATTGTTAAAGGAAGCGAGAACGGATCAGTGTC
TGAGCCGTGGCTCAATTGGAATGAACACTCGAAGACCGCCATGGAGAATG
CGATGAAAGTCTTTGATGATGCGTGCAAGACGACTGAGTTATGCAAGAGC
GTTTCGGATGCCAATGCGATGAAGGCCCATCCCCTTGGATTTGCAATTAC
TTCATCGATGATTGCGCGAAAGAGACTGGAAAAGACTTTAGAAACTGAGC
TGAAGCGTGAGACGGCCAGGGTTCTTTCGGAATCGCGTGCGCATTGCTTG
GGAACCTTCCGATCTGCTTTTAAGGCTCCGATGACAACTGTCTTAGAAAA
TGTGCCTGACGATATGTGGAGCCGCACTTCCGAGGTCGCTGATGTTTCGT
GGGAAGCTACGGCGAGGGAGGCCAAGACTGTCTATGGTGAAAATGGGCTC
GCACTGGAGGAGGACAAATTGAAGAACTTAGAAGAGGAGTTGAAGAACGA
GTGTCGGGACTCAGCTGTTAATGATATCAAGGCTGCAATCGGCACACCGT
CCAACATGTTGTTGAGAATGATGAAGCGCTTCGAAGATTCCTTCCGCTTT
GACGAAAGAGGGGTGCCTCGGCATTTCGGACCGAGTGAGGACATTGAAGC
GCTGTTCGTCGCTGCGAGAGAAAAAGGAGAGAAACTTGTCGAATTAATGT
CGGAAGTGCGATTGCAAGGATCTCTTGGTGGTGCGACAACCACTGCCAGC
CGGAGCATTGGCAAGAAAGGAAGCCAGGTGACTATTATTGACTCAAACGC
GCAGGCCGACCTCAGGGACAAGCTCAAGCGTCAGAGTGGAGCCATTTTCA
TGGAGGCAAAACGTGCGCAAGAAGCTGCAAGAATCACAACCAAGGTTCCG
ATCTGGCTCATCGGCGTGGTACTGATTCTCGGGTGGAACGAATTCATGGC
TGTTTTGCGGAATCCGTTGTTGCTGATGCTCACGATAATTGTTGTACCCA
TGGTGTACGTGGGATACACCCTGGATGCTCCTACGTATCTGGCGCCCGCG
GTGATAGCCACTCTGAAGCCCATGGTGGATCAAGCAAAAGACTTTTTAGA
ACAGACCACCAGCGCTCCGGTTTCCCAGCACGCCGCAGAGCCCGCGCCAG
TTTGCAAGTCTCCGTCAAGCGAGAGTACCGTGGTGTCGGCAAACCATACA
GAGAGTGCGATAGTCCCGGAGGAGAAAACAAGCTGA
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