Gvermi12685.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12685.t1
Unique NameGvermi12685.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length270
Homology
BLAST of Gvermi12685.t1 vs. uniprot
Match: A0A2V3ITK9_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITK9_9FLOR)

HSP 1 Score: 305 bits (782), Expect = 1.850e-101
Identity = 165/269 (61.34%), Postives = 199/269 (73.98%), Query Frame = 0
Query:    1 MKSLAVLIFLSLVIVASARDALEIPVALPFGAGSLPISVESRLKSRLEFAKTRLESIRSPLVNRPRGARALALAFSEVAQGGCDPNVCFALDGSKVIDADSFKLQKDFVKLVAGVISLDEQSQFAALQYASTTSIISDLTVDANDFLLKVDAAVQVKAPRTFVAQGLFGCMLQLFNTPFEANHIVLLGDGADNDINRLFASGSSFIAQNFLRNPNNQISAVAVGFEDTSGLERLVGSPDRVFTVDQWSEVLDVTAELVVDVCGIDAIEF 269
            M+ LA L+F SL+ +  A       V LPFG G LP     RL+ R E A+ RLE I +PL   P    +LA AF EVA GGCDPNVCFALDGS+ I++ +F+LQKDFVKLVAGVISLDEQSQFAALQY   + +ISDLT+DA DFLLKVD A +V   RTFVA G+FGC+ QL  TPFEANHIVLLGDG D+ + R     +  +A+ FL +P+N ISAVAVGF DTS LER+VG+P+RVF VD+W+EV+DVTAELV DVCG+DA+EF
Sbjct:    1 MRFLATLLFFSLLSLFVAHAMAS--VKLPFGLGELPTMAPERLRRRAEAARKRLERIDTPLTRSPSAMMSLARAFGEVAGGGCDPNVCFALDGSRTINSTNFQLQKDFVKLVAGVISLDEQSQFAALQYGLRSDVISDLTLDAEDFLLKVDGAKKVGYRRTFVAFGIFGCIQQLLKTPFEANHIVLLGDGDDDILVRHSGFNAESVAKRFLFSPHNAISAVAVGFSDTSHLERIVGNPNRVFEVDEWAEVVDVTAELVEDVCGLDAVEF 267          
BLAST of Gvermi12685.t1 vs. uniprot
Match: A0A2V3ISA4_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISA4_9FLOR)

HSP 1 Score: 186 bits (473), Expect = 4.490e-55
Identity = 100/219 (45.66%), Postives = 132/219 (60.27%), Query Frame = 0
Query:   51 KTRLESIRSPLVNRPRGARALALAFSEVAQGGCDPNVCFALDGSKVIDADSFKLQKDFVKLVAGVISLDEQSQFAALQYASTTSIISDLTVDANDFLLKVDAAVQVKAPRTFVAQGLFGCMLQLFNTPFEANHIVLLGDGADNDINRLFASGSSFIAQNFLRNPNNQISAVAVGFEDTSGLERLVGSPDRVFTVDQWSEVLDVTAELVVDVCGIDAIEF 269
            + R+E++ SPL         +  A   V + GC+PN+CFA+DGS  I  D F+LQ DFV L+ G++SLDEQS ++A+QY      +S  T DA  FLLKV+   Q+++ RTF+A G+ GCM Q      +AN I+LLGDG     +R        IA  FL  PNN I AV V F+ T  LE + G PDRVF+V  W  V+DV A+LV  VCG DA+EF
Sbjct:   22 EARIEALNSPLTTGAANRAQIDRALEIVEETGCEPNLCFAIDGSSSITDDEFQLQLDFVALITGLVSLDEQSGYSAIQYGLRPKFMSRFTQDAAAFLLKVEGTRQLRSVRTFIAPGIGGCMRQFRRVRGQANKIILLGDGRSTFDSRDPPLDPPSIAAQFLAEPNNSICAVGVSFDTTELLEEITGDPDRVFSVADWMSVVDVLADLVEQVCGADAVEF 240          
BLAST of Gvermi12685.t1 vs. uniprot
Match: A0A2V3IQR5_9FLOR (Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQR5_9FLOR)

HSP 1 Score: 184 bits (468), Expect = 2.860e-54
Identity = 103/221 (46.61%), Postives = 133/221 (60.18%), Query Frame = 0
Query:   50 AKTRLESIRSPLVNRPRGARALALAFSEVAQGGCDPNVCFALDGSKVIDADSFKLQKDFVKLVAGVISLDEQSQFAALQYASTTSIISDLTVDANDFLLKVDAAVQVKAPRTFVAQGLFGCMLQLFNTPFEANHIVLLGDGADNDINRLFASGSSFIAQNFLRNPNNQISAVAVGFE-DTSGLERLVGSPDRVFTVDQWSEVLDVTAELVVDVCGIDAIEF 269
            A  R++ + +PL         + LA     +  CDPN+CFA+DGS  +D   F+L+KDF  LVA V++ DEQ++FAA+QY      IS LT DA+ FL  V     + APRTF+A GL GC+ Q +    E  HIVLLGDG  N  ++L       IAQ FL NPNN ISAV VGF+ D + L  + G  + VF V QW EV  V AELV +VCG+DA+EF
Sbjct:   24 ADRRIDELDTPLTKGTANEAEVQLALQIAEKTRCDPNICFAVDGSGSMDVTEFQLEKDFTNLVAAVVAYDEQARFAAVQYGLRPKFISRLTEDADAFLEAVHYTESLNAPRTFIAPGLAGCIRQFYYLKGEPKHIVLLGDGRSNFDSKLPPLDPVSIAQAFLANPNNTISAVGVGFDADDTMLTNIAGGEENVFNVGQWLEVTTVLAELVGEVCGLDAVEF 244          
BLAST of Gvermi12685.t1 vs. uniprot
Match: A0A2V3IPP3_9FLOR (Collagen alpha-6(VI) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPP3_9FLOR)

HSP 1 Score: 150 bits (378), Expect = 8.590e-41
Identity = 91/228 (39.91%), Postives = 124/228 (54.39%), Query Frame = 0
Query:   42 RLKSRLEFAKTRLESIRSP---LVNRPRGARALALAFSEVAQGGCDPNVCFALDGSKVIDADSFKLQKDFVKLVAGVISLDEQSQFAALQYASTTSIISDLTVDANDFLLKVDAAVQVKAPRTFVAQGLFGCMLQLFNTPFEANHIVLLGDGADNDINRLFASGSSFIAQNFLRNPNNQISAVAVGFEDTSGLERLVGSPDRVFTVDQWSEVLDVTAELVVDVCGIDA 266
            RL S   + +T L S+  P   L       + +  A   V +  C+ N+CFA+DGS  +    FK+Q DF+ LVAG++SLD  S++AA+QY   +S+IS LT D   FLL V   VQ  + RTFVA+G+  C  QL      A  IV+LGDG               ++Q FL +P++ I AV V F DTS LE++ G   +VF V  W  VLD    LVV VCG ++
Sbjct:   14 RLTSAFSY-QTALRSVLDPNSLLTKSEENMKFVKAAMDVVRKKKCNLNICFAVDGSGYMHGKDFKMQLDFINLVAGIVSLDPTSRYAAVQYGRRSSVISRLTRDTKSFLLNVKGTVQQCSSRTFVARGISRCARQLRRAKRGAKKIVVLGDGRSRFQTYGPPRDPVSVSQAFLSDPSHGICAVGVNFRDTSMLEQITGDASKVFMVSDWESVLDALDALVVQVCGAES 240          
BLAST of Gvermi12685.t1 vs. uniprot
Match: A0A8D2LWT9_VARKO (Uncharacterized protein n=2 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2LWT9_VARKO)

HSP 1 Score: 57.8 bits (138), Expect = 8.940e-6
Identity = 49/206 (23.79%), Postives = 96/206 (46.60%), Query Frame = 0
Query:   68 ARALALAFSEVAQGGCD--PNVCFALDGSKVIDADSFKLQKDFVKLVAGVISLDEQSQFAALQYASTTSIISDLT--VDANDFLLKVDAAVQVKAPRTFVAQGLFGCMLQLFN-------TPFEANHIVLLGDGADNDINRLFASGSSFIAQNFLRNPNNQISAVAVGFEDTSGLERLVGSPDRVFTVDQWSEVLDVTAELVVDVC 262
            ++ L+     +++  CD    V F +DGSK +  + F+  K+F+K +   I    + QF   Q++ +      L   +   + + K++    +   +T++   L G   +L+        T      ++L+ DG  +D       G +  A+  LR     I A+ VG  +   L+++ G PDR +T+D +S++ +VT +L+ D C
Sbjct:  936 SKTLSQQLCNISKPECDIQAEVVFLIDGSKSVPREDFERMKNFLKELIKKIEYKSELQFGMAQFSESYKEEFSLGDYLSKENLMEKINNVSMLFGKKTYIGVALTGVQ-ELYKSRRRRSATSAMEQKLLLITDGKSDD-------GVAKPAE-VLRKQGVGIYAIGVGEVNEMQLQQITGFPDRKYTIDMFSDLPNVTTQLIRDWC 1132          
The following BLAST results are available for this feature:
BLAST of Gvermi12685.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3ITK9_9FLOR1.850e-10161.34VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3ISA4_9FLOR4.490e-5545.66VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IQR5_9FLOR2.860e-5446.61Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis ... [more]
A0A2V3IPP3_9FLOR8.590e-4139.91Collagen alpha-6(VI) chain n=1 Tax=Gracilariopsis ... [more]
A0A8D2LWT9_VARKO8.940e-623.79Uncharacterized protein n=2 Tax=Varanus komodoensi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 84..262
e-value: 1.2E-5
score: 34.7
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 86..254
e-value: 5.4E-14
score: 52.8
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 86..257
score: 11.556042
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 85..267
e-value: 3.0E-18
score: 68.4
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 83..263
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..269
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableCDDcd01450vWFA_subfamily_ECMcoord: 89..242
e-value: 1.49042E-9
score: 53.8346

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:826895..827704 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12685.t1Gvermi12685.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 826895..827704 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12685.t1 ID=Gvermi12685.t1|Name=Gvermi12685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=270bp
MKSLAVLIFLSLVIVASARDALEIPVALPFGAGSLPISVESRLKSRLEFA
KTRLESIRSPLVNRPRGARALALAFSEVAQGGCDPNVCFALDGSKVIDAD
SFKLQKDFVKLVAGVISLDEQSQFAALQYASTTSIISDLTVDANDFLLKV
DAAVQVKAPRTFVAQGLFGCMLQLFNTPFEANHIVLLGDGADNDINRLFA
SGSSFIAQNFLRNPNNQISAVAVGFEDTSGLERLVGSPDRVFTVDQWSEV
LDVTAELVVDVCGIDAIEF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf