Gvermi12931.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12931.t1
Unique NameGvermi12931.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length298
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2200668..2201799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12931Gvermi12931Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2200668..2201799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12931.t1Gvermi12931.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2200668..2201799 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12931.t1.stop1Gvermi12931.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2200668..2200670 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12931.t1.CDS1Gvermi12931.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2200668..2201109 -
Gvermi12931.t1.CDS2Gvermi12931.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2201348..2201799 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12931.t1.exon1Gvermi12931.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2200668..2201109 -
Gvermi12931.t1.exon2Gvermi12931.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2201348..2201799 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12931.t1.intron1Gvermi12931.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 2201110..2201347 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12931.t1.start1Gvermi12931.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2201797..2201799 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12931.t1 ID=Gvermi12931.t1|Name=Gvermi12931.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=298bp
MWQQALEELFLETLRTYYQDNPMLTDSEFQTLRDELEHLGANQLRLDRME
KVWVQATSSRDFDRRVREEFEISEEELRALKTRLLEAGIVQRAVKSADVR
HAREQRDRGDEEQEEAADGDDDIRLLNGASDKCNDARRIDADAKMNERLK
WLIFTDASEERFKIMLLYLPAVLMSLVTASVFTILFALLDGEMSITVTAA
GRFRLGILSYLVVMMTVWFSNQVTPVMLDYLDLGQPSLLRGECPICEAPI
SCLFTGAARNRDERTCGMCGCTIGFNRRWSKIYLVSQPSNNKYEAPD*
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spliced messenger RNA

>Gvermi12931.t1 ID=Gvermi12931.t1|Name=Gvermi12931.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=894bp|location=Sequence derived from alignment at ScGOVlb_425:2200668..2201799- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCAGCAGGCGCTGGAAGAGCTCTTCTTGGAAACGCTGCGCACGTA
CTACCAAGACAACCCCATGCTGACGGACAGCGAGTTCCAAACGCTGCGCG
ACGAGTTGGAGCATCTGGGCGCCAACCAGTTGCGCCTGGACCGCATGGAG
AAGGTGTGGGTGCAGGCCACCAGCTCGCGCGACTTTGACCGCCGCGTGAG
AGAGGAGTTCGAAATCTCGGAGGAGGAGCTCAGGGCGTTGAAGACACGGC
TGTTGGAAGCGGGCATTGTTCAACGCGCGGTCAAGTCGGCCGACGTTCGA
CACGCGCGCGAGCAACGCGATCGCGGCGATGAGGAGCAGGAGGAGGCCGC
CGACGGCGACGATGACATTCGTCTGCTAAACGGCGCGTCTGACAAGTGCA
ACGATGCCCGCCGTATCGATGCTGATGCCAAAATGAACGAGAGACTCAAA
TGGTTAATTTTCACAGATGCTAGCGAGGAAAGGTTCAAAATCATGTTGCT
GTACCTTCCAGCAGTGCTCATGTCGCTGGTCACGGCTTCGGTCTTCACCA
TTTTGTTTGCGTTGCTTGACGGTGAGATGAGCATCACCGTCACGGCGGCC
GGCCGTTTCCGCCTCGGAATCCTGTCGTATCTGGTGGTCATGATGACGGT
GTGGTTTTCGAATCAGGTGACGCCTGTCATGTTGGACTACTTGGACTTGG
GGCAGCCCAGCCTGCTTCGTGGCGAGTGTCCCATATGCGAGGCGCCCATT
TCTTGCTTGTTCACGGGCGCCGCCAGAAACCGTGACGAGAGAACGTGCGG
CATGTGCGGATGCACCATCGGGTTCAACAGGCGATGGTCCAAGATATATC
TGGTCTCACAGCCTTCCAATAACAAGTACGAGGCGCCTGACTGA
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protein sequence of Gvermi12931.t1

>Gvermi12931.t1 ID=Gvermi12931.t1|Name=Gvermi12931.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=298bp
MWQQALEELFLETLRTYYQDNPMLTDSEFQTLRDELEHLGANQLRLDRME
KVWVQATSSRDFDRRVREEFEISEEELRALKTRLLEAGIVQRAVKSADVR
HAREQRDRGDEEQEEAADGDDDIRLLNGASDKCNDARRIDADAKMNERLK
WLIFTDASEERFKIMLLYLPAVLMSLVTASVFTILFALLDGEMSITVTAA
GRFRLGILSYLVVMMTVWFSNQVTPVMLDYLDLGQPSLLRGECPICEAPI
SCLFTGAARNRDERTCGMCGCTIGFNRRWSKIYLVSQPSNNKYEAPD*
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mRNA from alignment at ScGOVlb_425:2200668..2201799-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12931.t1 ID=Gvermi12931.t1|Name=Gvermi12931.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1132bp|location=Sequence derived from alignment at ScGOVlb_425:2200668..2201799- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGCAGCAGGCGCTGGAAGAGCTCTTCTTGGAAACGCTGCGCACGTA
CTACCAAGACAACCCCATGCTGACGGACAGCGAGTTCCAAACGCTGCGCG
ACGAGTTGGAGCATCTGGGCGCCAACCAGTTGCGCCTGGACCGCATGGAG
AAGGTGTGGGTGCAGGCCACCAGCTCGCGCGACTTTGACCGCCGCGTGAG
AGAGGAGTTCGAAATCTCGGAGGAGGAGCTCAGGGCGTTGAAGACACGGC
TGTTGGAAGCGGGCATTGTTCAACGCGCGGTCAAGTCGGCCGACGTTCGA
CACGCGCGCGAGCAACGCGATCGCGGCGATGAGGAGCAGGAGGAGGCCGC
CGACGGCGACGATGACATTCGTCTGCTAAACGGCGCGTCTGACAAGTGCA
ACGATGCCCGCCGTATCGATGCTGATGCCAAAATGAACGAGAGACTCAAA
TGGTTTGTATTCGCTACTATTCGCCTGACACGCGCAGTTCACTCGTTAAC
ACACACACGCGCATGCTCTCACGCACGCACGCACGCACGCTCGCACGCTC
GCACGCACGCACGCACGCACGCACGCACGCTCGCACGCTCGCACGCTCGC
TCGCTCTCTCGCGTGCCCGCTCGCTCGCACGCACACACACACACGCGCTC
AAATATGCACACCCGTCTTGCCGTTCTTTGTGTTCCGCAGGTTAATTTTC
ACAGATGCTAGCGAGGAAAGGTTCAAAATCATGTTGCTGTACCTTCCAGC
AGTGCTCATGTCGCTGGTCACGGCTTCGGTCTTCACCATTTTGTTTGCGT
TGCTTGACGGTGAGATGAGCATCACCGTCACGGCGGCCGGCCGTTTCCGC
CTCGGAATCCTGTCGTATCTGGTGGTCATGATGACGGTGTGGTTTTCGAA
TCAGGTGACGCCTGTCATGTTGGACTACTTGGACTTGGGGCAGCCCAGCC
TGCTTCGTGGCGAGTGTCCCATATGCGAGGCGCCCATTTCTTGCTTGTTC
ACGGGCGCCGCCAGAAACCGTGACGAGAGAACGTGCGGCATGTGCGGATG
CACCATCGGGTTCAACAGGCGATGGTCCAAGATATATCTGGTCTCACAGC
CTTCCAATAACAAGTACGAGGCGCCTGACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:2200668..2201799-

>Gvermi12931.t1 ID=Gvermi12931.t1|Name=Gvermi12931.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=894bp|location=Sequence derived from alignment at ScGOVlb_425:2200668..2201799- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGCAGCAGGCGCTGGAAGAGCTCTTCTTGGAAACGCTGCGCACGTA
CTACCAAGACAACCCCATGCTGACGGACAGCGAGTTCCAAACGCTGCGCG
ACGAGTTGGAGCATCTGGGCGCCAACCAGTTGCGCCTGGACCGCATGGAG
AAGGTGTGGGTGCAGGCCACCAGCTCGCGCGACTTTGACCGCCGCGTGAG
AGAGGAGTTCGAAATCTCGGAGGAGGAGCTCAGGGCGTTGAAGACACGGC
TGTTGGAAGCGGGCATTGTTCAACGCGCGGTCAAGTCGGCCGACGTTCGA
CACGCGCGCGAGCAACGCGATCGCGGCGATGAGGAGCAGGAGGAGGCCGC
CGACGGCGACGATGACATTCGTCTGCTAAACGGCGCGTCTGACAAGTGCA
ACGATGCCCGCCGTATCGATGCTGATGCCAAAATGAACGAGAGACTCAAA
TGGTTAATTTTCACAGATGCTAGCGAGGAAAGGTTCAAAATCATGTTGCT
GTACCTTCCAGCAGTGCTCATGTCGCTGGTCACGGCTTCGGTCTTCACCA
TTTTGTTTGCGTTGCTTGACGGTGAGATGAGCATCACCGTCACGGCGGCC
GGCCGTTTCCGCCTCGGAATCCTGTCGTATCTGGTGGTCATGATGACGGT
GTGGTTTTCGAATCAGGTGACGCCTGTCATGTTGGACTACTTGGACTTGG
GGCAGCCCAGCCTGCTTCGTGGCGAGTGTCCCATATGCGAGGCGCCCATT
TCTTGCTTGTTCACGGGCGCCGCCAGAAACCGTGACGAGAGAACGTGCGG
CATGTGCGGATGCACCATCGGGTTCAACAGGCGATGGTCCAAGATATATC
TGGTCTCACAGCCTTCCAATAACAAGTACGAGGCGCCTGACTGA
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