Gvermi12722.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12722.t1
Unique NameGvermi12722.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1208805..1209685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12722Gvermi12722Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1208805..1209685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12722.t1Gvermi12722.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1208805..1209685 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12722.t1.start1Gvermi12722.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1208805..1208807 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12722.t1.CDS1Gvermi12722.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1208805..1209353 +
Gvermi12722.t1.CDS2Gvermi12722.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1209569..1209685 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12722.t1.exon1Gvermi12722.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1208805..1209353 +
Gvermi12722.t1.exon2Gvermi12722.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1209569..1209685 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12722.t1.intron1Gvermi12722.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1209354..1209568 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12722.t1.stop1Gvermi12722.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1209683..1209685 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12722.t1 ID=Gvermi12722.t1|Name=Gvermi12722.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=222bp
MFSQSPSHNPHPPRELRPGRLPLHERTLYVQGVPILTLPPDFYLTEADIL
IDREFKRRARANRDNDHASKRVCLPSTATGVMNPSSGALPSQLRNVAGFP
PSYNLHHEADALQFVPSDAAFSHWSQAPRAANKWTCTSCSFQFAYKDHLA
RHRAFVHEGKTESKCSHCSKVYVEFKSLRRHINQLDLWRSHILTAHFGES
YAHRISWDTWRCLVRSEQHNA*
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spliced messenger RNA

>Gvermi12722.t1 ID=Gvermi12722.t1|Name=Gvermi12722.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=666bp|location=Sequence derived from alignment at ScGOVlb_425:1208805..1209685+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTCGCAGTCGCCGTCGCACAACCCGCACCCGCCTCGCGAACTTCG
CCCCGGCAGGCTGCCTCTCCACGAACGTACCCTGTATGTACAGGGTGTCC
CAATACTTACGCTGCCGCCCGACTTTTACCTGACGGAGGCCGATATTCTC
ATCGACAGAGAGTTCAAACGCCGAGCCCGCGCCAACCGTGACAACGACCA
CGCTTCGAAGCGCGTGTGCCTCCCCTCAACCGCGACGGGCGTGATGAACC
CCAGCTCTGGCGCACTGCCATCACAGCTTCGCAATGTTGCCGGCTTCCCG
CCGTCGTACAATCTGCACCACGAGGCCGATGCGTTGCAGTTCGTGCCGTC
AGACGCCGCGTTCTCGCACTGGTCCCAGGCCCCGCGCGCAGCCAATAAGT
GGACCTGCACCAGCTGTTCGTTCCAGTTTGCGTACAAAGACCATCTGGCA
CGCCACCGCGCGTTTGTGCACGAGGGCAAGACCGAAAGCAAGTGCAGCCA
CTGCTCCAAGGTATACGTCGAGTTTAAAAGTCTTCGTCGTCACATCAACC
AGCTGGACCTGTGGCGAAGCCATATTCTCACGGCTCACTTCGGAGAGAGT
TACGCGCACCGCATCAGCTGGGACACCTGGAGATGCCTGGTGCGTAGCGA
ACAGCACAATGCGTAA
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protein sequence of Gvermi12722.t1

>Gvermi12722.t1 ID=Gvermi12722.t1|Name=Gvermi12722.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=222bp
MFSQSPSHNPHPPRELRPGRLPLHERTLYVQGVPILTLPPDFYLTEADIL
IDREFKRRARANRDNDHASKRVCLPSTATGVMNPSSGALPSQLRNVAGFP
PSYNLHHEADALQFVPSDAAFSHWSQAPRAANKWTCTSCSFQFAYKDHLA
RHRAFVHEGKTESKCSHCSKVYVEFKSLRRHINQLDLWRSHILTAHFGES
YAHRISWDTWRCLVRSEQHNA*
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mRNA from alignment at ScGOVlb_425:1208805..1209685+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12722.t1 ID=Gvermi12722.t1|Name=Gvermi12722.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=881bp|location=Sequence derived from alignment at ScGOVlb_425:1208805..1209685+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTTCGCAGTCGCCGTCGCACAACCCGCACCCGCCTCGCGAACTTCG
CCCCGGCAGGCTGCCTCTCCACGAACGTACCCTGTATGTACAGGGTGTCC
CAATACTTACGCTGCCGCCCGACTTTTACCTGACGGAGGCCGATATTCTC
ATCGACAGAGAGTTCAAACGCCGAGCCCGCGCCAACCGTGACAACGACCA
CGCTTCGAAGCGCGTGTGCCTCCCCTCAACCGCGACGGGCGTGATGAACC
CCAGCTCTGGCGCACTGCCATCACAGCTTCGCAATGTTGCCGGCTTCCCG
CCGTCGTACAATCTGCACCACGAGGCCGATGCGTTGCAGTTCGTGCCGTC
AGACGCCGCGTTCTCGCACTGGTCCCAGGCCCCGCGCGCAGCCAATAAGT
GGACCTGCACCAGCTGTTCGTTCCAGTTTGCGTACAAAGACCATCTGGCA
CGCCACCGCGCGTTTGTGCACGAGGGCAAGACCGAAAGCAAGTGCAGCCA
CTGCTCCAAGGTATACGTCGAGTTTAAAAGTCTTCGTCGTCACATCAACG
TACGTGGACCCATCCGCCTCCCGCTTTTCGAGTTGATCTGCTTCCACGCA
TTACCTTCTGACCCGCCTCGTTTTTCCACATGTTTCTCTGTTTCCTTCTG
CGTATTTTTCTCTGTTTATCTGTTTCCCCGTATCGCGCGCGGCAGCAAAA
CCACATTAGTTTGTCGGCGTCGGGCTGTTCCTTCTTCTGCTACTGGTGCC
CGTTCCGCTGCCAGCAGCTGGACCTGTGGCGAAGCCATATTCTCACGGCT
CACTTCGGAGAGAGTTACGCGCACCGCATCAGCTGGGACACCTGGAGATG
CCTGGTGCGTAGCGAACAGCACAATGCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1208805..1209685+

>Gvermi12722.t1 ID=Gvermi12722.t1|Name=Gvermi12722.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=666bp|location=Sequence derived from alignment at ScGOVlb_425:1208805..1209685+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTTCGCAGTCGCCGTCGCACAACCCGCACCCGCCTCGCGAACTTCG
CCCCGGCAGGCTGCCTCTCCACGAACGTACCCTGTATGTACAGGGTGTCC
CAATACTTACGCTGCCGCCCGACTTTTACCTGACGGAGGCCGATATTCTC
ATCGACAGAGAGTTCAAACGCCGAGCCCGCGCCAACCGTGACAACGACCA
CGCTTCGAAGCGCGTGTGCCTCCCCTCAACCGCGACGGGCGTGATGAACC
CCAGCTCTGGCGCACTGCCATCACAGCTTCGCAATGTTGCCGGCTTCCCG
CCGTCGTACAATCTGCACCACGAGGCCGATGCGTTGCAGTTCGTGCCGTC
AGACGCCGCGTTCTCGCACTGGTCCCAGGCCCCGCGCGCAGCCAATAAGT
GGACCTGCACCAGCTGTTCGTTCCAGTTTGCGTACAAAGACCATCTGGCA
CGCCACCGCGCGTTTGTGCACGAGGGCAAGACCGAAAGCAAGTGCAGCCA
CTGCTCCAAGGTATACGTCGAGTTTAAAAGTCTTCGTCGTCACATCAACC
AGCTGGACCTGTGGCGAAGCCATATTCTCACGGCTCACTTCGGAGAGAGT
TACGCGCACCGCATCAGCTGGGACACCTGGAGATGCCTGGTGCGTAGCGA
ACAGCACAATGCGTAA
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