Gvermi12879.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12879.t1
Unique Name	Gvermi12879.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	677

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1881903..1883933 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_03312T0
Preferred name	DUR3
PFAMs	SSF
Max annot lvl	33154\|Opisthokonta
KEGG ko	ko:K20989
KEGG TC	2.A.21.6
GOs	GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0008519,GO:0009056,GO:0009987,GO:0012505,GO:0015075,GO:0015101,GO:0015203,GO:0015204,GO:0015291,GO:0015293,GO:0015489,GO:0015606,GO:0015695,GO:0015696,GO:0015840,GO:0015846,GO:0015847,GO:0015848,GO:0016020,GO:0016021,GO:0019627,GO:0019755,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0034641,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043419,GO:0043603,GO:0043605,GO:0044237,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0071918,GO:0071941,GO:0071944,GO:0072488,GO:0098655,GO:1901564,GO:1901565,GO:1901575,GO:1902047,GO:1903711
Evalue	1.59e-244
EggNOG OGs	COG0591@1\|root,KOG2348@2759\|Eukaryota,38H6Q@33154\|Opisthokonta
Description	putrescine transmembrane transporter activity
COG category	E
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12879	Gvermi12879	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1881903..1883933 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12879.t1.stop1	Gvermi12879.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1881903..1881905 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12879.t1.CDS1	Gvermi12879.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1881903..1883933 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12879.t1.exon1	Gvermi12879.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1881903..1883933 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12879.t1.start1	Gvermi12879.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1883931..1883933 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12879.t1	Gvermi12879.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1881903..1883933 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1881903..1883933-
coding sequence from alignment at ScGOVlb_425:1881903..1883933-

mRNA sequence

>Gvermi12879.t1 ID=Gvermi12879.t1|Name=Gvermi12879.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=677bp
MADSPEAFISPSFFNFSCPENIKTTVIRNFFNLSQYKCRTKFFEDSPLSL
GIGFAVVLAFGLAFGVATVALVFIDQYVFRRVMNSEYFNTAGRSVRTGLT
ASVIVSQWTWAATLLQSSTVAFQYGVAGPLWYAACATVQVILFSTIAVLV
KLRAPTAHTFLEIVRARWGTIAHLSFMVFAMITNVIVTSLLVLGASVTVN
VLTGMNVDLASFLIPLGVILYTLAGGLKATFVASYFNTAVILISLVVFMF
KVYVTSEDLGSPSTVYERLQFVSSIEQVEGNLGGSYLTILSRRGFFFGMV
NLVGNFGTVFIDQSYWQSAIAATPTASWKGYLLGGLCWFAIPFSLASSLG
LAAVALSLPLTNDEAEQGLVPPATAIHLMGNNGASLVLVMLFMAVTSSGA
SEQIALSSLVAYDVFRTYINPNCSGQQVIFLSRIVILIYGLLMGGLGIAF
HHIGVNLDFLYKAMGVFIGPAVVPVAYSISWGRCSARGAVLGAWTGLLCG
LAVWFGYAGSYPGGVTIRNLKIDEVMVAGNLTSILSSAVVCTIISILKPD
DCDWSTTKAIPLIEDDPNAHIAFETEEALEKALKRIGVIGLIVAFVLMIL
WPALALPARVFSKNYFQFWVIISFIWGMISCSLMVILPIIESRQGILTLI
TGGRMGLARKAEDEDVGLQDFVIEER*

spliced messenger RNA

>Gvermi12879.t1 ID=Gvermi12879.t1|Name=Gvermi12879.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2031bp|location=Sequence derived from alignment at ScGOVlb_425:1881903..1883933- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGACTCCCCCGAAGCGTTTATCTCCCCGTCCTTCTTTAACTTCAG
TTGTCCTGAGAACATCAAGACCACCGTCATTCGCAACTTCTTCAACTTAT
CACAGTACAAATGCCGAACAAAATTCTTCGAGGACTCCCCGCTGTCACTT
GGCATAGGCTTCGCGGTGGTGCTTGCTTTCGGTCTTGCATTCGGCGTCGC
CACTGTTGCCCTCGTGTTCATTGACCAATACGTTTTCAGACGCGTTATGA
ACTCAGAATACTTCAATACAGCGGGTCGTTCGGTGCGTACTGGCCTTACC
GCATCCGTCATTGTCTCGCAATGGACGTGGGCTGCTACCCTGCTACAAAG
CTCCACTGTCGCGTTTCAGTACGGCGTTGCAGGCCCTTTGTGGTACGCCG
CTTGTGCCACCGTACAGGTTATACTCTTCTCCACAATCGCTGTGTTGGTC
AAACTGCGCGCTCCAACCGCGCACACCTTCCTCGAGATTGTACGTGCCCG
ATGGGGAACTATCGCACATCTCTCTTTCATGGTGTTCGCCATGATAACGA
ACGTTATCGTTACAAGTCTGTTAGTTCTGGGTGCGAGCGTCACTGTCAAT
GTACTTACGGGAATGAACGTGGATCTTGCAAGCTTCTTGATTCCCTTGGG
TGTAATTCTTTACACGCTGGCAGGGGGTCTCAAGGCCACCTTTGTGGCCA
GCTATTTCAATACCGCTGTTATTCTAATATCATTGGTTGTCTTTATGTTT
AAGGTTTATGTCACTTCAGAGGATTTGGGATCTCCGAGCACGGTCTACGA
GAGATTGCAATTCGTCTCCAGTATCGAGCAGGTTGAGGGAAATCTCGGAG
GGTCGTATTTAACTATTCTTTCACGAAGAGGTTTCTTTTTCGGAATGGTT
AACCTTGTTGGCAATTTTGGCACTGTTTTTATCGACCAGTCATATTGGCA
GTCAGCGATTGCAGCTACTCCAACTGCATCATGGAAAGGATATCTTTTGG
GTGGTCTTTGTTGGTTTGCGATTCCGTTTTCTCTGGCATCTTCTCTCGGT
CTTGCTGCCGTAGCACTTTCTCTTCCTTTGACAAATGACGAAGCTGAGCA
AGGTTTGGTGCCGCCAGCAACTGCTATTCATCTTATGGGAAACAACGGGG
CATCTTTGGTGCTAGTGATGTTGTTTATGGCAGTAACGTCTTCTGGAGCG
TCTGAGCAGATTGCTCTTTCTTCGCTGGTAGCCTATGATGTGTTCAGAAC
GTACATCAACCCTAACTGCTCAGGACAGCAAGTTATTTTTCTCTCGCGTA
TTGTTATTCTCATATACGGGTTGTTGATGGGAGGTCTTGGTATAGCCTTT
CACCACATTGGTGTCAATTTGGACTTTTTGTACAAAGCAATGGGTGTGTT
CATAGGACCAGCAGTGGTGCCAGTTGCTTACTCAATATCTTGGGGGCGTT
GCTCTGCGAGAGGAGCCGTTTTAGGAGCTTGGACGGGCTTGCTTTGCGGC
CTGGCCGTTTGGTTTGGTTATGCGGGCTCATATCCCGGCGGCGTGACAAT
AAGAAACCTGAAAATAGATGAGGTTATGGTAGCTGGAAATCTCACGTCCA
TTCTATCTTCAGCAGTGGTGTGCACGATAATCAGTATTCTCAAGCCTGAT
GATTGTGACTGGAGCACCACGAAAGCTATACCTTTGATTGAAGATGACCC
TAACGCACATATAGCCTTTGAAACTGAAGAAGCGCTCGAAAAAGCCCTGA
AGAGAATCGGCGTGATCGGCTTAATCGTAGCCTTCGTACTAATGATCTTG
TGGCCGGCACTTGCGTTACCAGCAAGAGTTTTCTCGAAAAACTATTTTCA
GTTTTGGGTCATTATATCCTTCATATGGGGCATGATCTCATGCTCACTGA
TGGTCATCTTGCCCATCATCGAGTCCCGCCAAGGAATCTTGACATTAATT
ACAGGCGGACGAATGGGTTTGGCCCGGAAAGCAGAGGATGAAGATGTCGG
GCTTCAAGACTTCGTGATTGAAGAGAGATGA

protein sequence of Gvermi12879.t1

>Gvermi12879.t1 ID=Gvermi12879.t1|Name=Gvermi12879.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=677bp
MADSPEAFISPSFFNFSCPENIKTTVIRNFFNLSQYKCRTKFFEDSPLSL
GIGFAVVLAFGLAFGVATVALVFIDQYVFRRVMNSEYFNTAGRSVRTGLT
ASVIVSQWTWAATLLQSSTVAFQYGVAGPLWYAACATVQVILFSTIAVLV
KLRAPTAHTFLEIVRARWGTIAHLSFMVFAMITNVIVTSLLVLGASVTVN
VLTGMNVDLASFLIPLGVILYTLAGGLKATFVASYFNTAVILISLVVFMF
KVYVTSEDLGSPSTVYERLQFVSSIEQVEGNLGGSYLTILSRRGFFFGMV
NLVGNFGTVFIDQSYWQSAIAATPTASWKGYLLGGLCWFAIPFSLASSLG
LAAVALSLPLTNDEAEQGLVPPATAIHLMGNNGASLVLVMLFMAVTSSGA
SEQIALSSLVAYDVFRTYINPNCSGQQVIFLSRIVILIYGLLMGGLGIAF
HHIGVNLDFLYKAMGVFIGPAVVPVAYSISWGRCSARGAVLGAWTGLLCG
LAVWFGYAGSYPGGVTIRNLKIDEVMVAGNLTSILSSAVVCTIISILKPD
DCDWSTTKAIPLIEDDPNAHIAFETEEALEKALKRIGVIGLIVAFVLMIL
WPALALPARVFSKNYFQFWVIISFIWGMISCSLMVILPIIESRQGILTLI
TGGRMGLARKAEDEDVGLQDFVIEER*

mRNA from alignment at ScGOVlb_425:1881903..1883933-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12879.t1 ID=Gvermi12879.t1|Name=Gvermi12879.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2031bp|location=Sequence derived from alignment at ScGOVlb_425:1881903..1883933- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGACTCCCCCGAAGCGTTTATCTCCCCGTCCTTCTTTAACTTCAG
TTGTCCTGAGAACATCAAGACCACCGTCATTCGCAACTTCTTCAACTTAT
CACAGTACAAATGCCGAACAAAATTCTTCGAGGACTCCCCGCTGTCACTT
GGCATAGGCTTCGCGGTGGTGCTTGCTTTCGGTCTTGCATTCGGCGTCGC
CACTGTTGCCCTCGTGTTCATTGACCAATACGTTTTCAGACGCGTTATGA
ACTCAGAATACTTCAATACAGCGGGTCGTTCGGTGCGTACTGGCCTTACC
GCATCCGTCATTGTCTCGCAATGGACGTGGGCTGCTACCCTGCTACAAAG
CTCCACTGTCGCGTTTCAGTACGGCGTTGCAGGCCCTTTGTGGTACGCCG
CTTGTGCCACCGTACAGGTTATACTCTTCTCCACAATCGCTGTGTTGGTC
AAACTGCGCGCTCCAACCGCGCACACCTTCCTCGAGATTGTACGTGCCCG
ATGGGGAACTATCGCACATCTCTCTTTCATGGTGTTCGCCATGATAACGA
ACGTTATCGTTACAAGTCTGTTAGTTCTGGGTGCGAGCGTCACTGTCAAT
GTACTTACGGGAATGAACGTGGATCTTGCAAGCTTCTTGATTCCCTTGGG
TGTAATTCTTTACACGCTGGCAGGGGGTCTCAAGGCCACCTTTGTGGCCA
GCTATTTCAATACCGCTGTTATTCTAATATCATTGGTTGTCTTTATGTTT
AAGGTTTATGTCACTTCAGAGGATTTGGGATCTCCGAGCACGGTCTACGA
GAGATTGCAATTCGTCTCCAGTATCGAGCAGGTTGAGGGAAATCTCGGAG
GGTCGTATTTAACTATTCTTTCACGAAGAGGTTTCTTTTTCGGAATGGTT
AACCTTGTTGGCAATTTTGGCACTGTTTTTATCGACCAGTCATATTGGCA
GTCAGCGATTGCAGCTACTCCAACTGCATCATGGAAAGGATATCTTTTGG
GTGGTCTTTGTTGGTTTGCGATTCCGTTTTCTCTGGCATCTTCTCTCGGT
CTTGCTGCCGTAGCACTTTCTCTTCCTTTGACAAATGACGAAGCTGAGCA
AGGTTTGGTGCCGCCAGCAACTGCTATTCATCTTATGGGAAACAACGGGG
CATCTTTGGTGCTAGTGATGTTGTTTATGGCAGTAACGTCTTCTGGAGCG
TCTGAGCAGATTGCTCTTTCTTCGCTGGTAGCCTATGATGTGTTCAGAAC
GTACATCAACCCTAACTGCTCAGGACAGCAAGTTATTTTTCTCTCGCGTA
TTGTTATTCTCATATACGGGTTGTTGATGGGAGGTCTTGGTATAGCCTTT
CACCACATTGGTGTCAATTTGGACTTTTTGTACAAAGCAATGGGTGTGTT
CATAGGACCAGCAGTGGTGCCAGTTGCTTACTCAATATCTTGGGGGCGTT
GCTCTGCGAGAGGAGCCGTTTTAGGAGCTTGGACGGGCTTGCTTTGCGGC
CTGGCCGTTTGGTTTGGTTATGCGGGCTCATATCCCGGCGGCGTGACAAT
AAGAAACCTGAAAATAGATGAGGTTATGGTAGCTGGAAATCTCACGTCCA
TTCTATCTTCAGCAGTGGTGTGCACGATAATCAGTATTCTCAAGCCTGAT
GATTGTGACTGGAGCACCACGAAAGCTATACCTTTGATTGAAGATGACCC
TAACGCACATATAGCCTTTGAAACTGAAGAAGCGCTCGAAAAAGCCCTGA
AGAGAATCGGCGTGATCGGCTTAATCGTAGCCTTCGTACTAATGATCTTG
TGGCCGGCACTTGCGTTACCAGCAAGAGTTTTCTCGAAAAACTATTTTCA
GTTTTGGGTCATTATATCCTTCATATGGGGCATGATCTCATGCTCACTGA
TGGTCATCTTGCCCATCATCGAGTCCCGCCAAGGAATCTTGACATTAATT
ACAGGCGGACGAATGGGTTTGGCCCGGAAAGCAGAGGATGAAGATGTCGG
GCTTCAAGACTTCGTGATTGAAGAGAGATGA

Coding sequence (CDS) from alignment at ScGOVlb_425:1881903..1883933-

>Gvermi12879.t1 ID=Gvermi12879.t1|Name=Gvermi12879.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2031bp|location=Sequence derived from alignment at ScGOVlb_425:1881903..1883933- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGACTCCCCCGAAGCGTTTATCTCCCCGTCCTTCTTTAACTTCAG
TTGTCCTGAGAACATCAAGACCACCGTCATTCGCAACTTCTTCAACTTAT
CACAGTACAAATGCCGAACAAAATTCTTCGAGGACTCCCCGCTGTCACTT
GGCATAGGCTTCGCGGTGGTGCTTGCTTTCGGTCTTGCATTCGGCGTCGC
CACTGTTGCCCTCGTGTTCATTGACCAATACGTTTTCAGACGCGTTATGA
ACTCAGAATACTTCAATACAGCGGGTCGTTCGGTGCGTACTGGCCTTACC
GCATCCGTCATTGTCTCGCAATGGACGTGGGCTGCTACCCTGCTACAAAG
CTCCACTGTCGCGTTTCAGTACGGCGTTGCAGGCCCTTTGTGGTACGCCG
CTTGTGCCACCGTACAGGTTATACTCTTCTCCACAATCGCTGTGTTGGTC
AAACTGCGCGCTCCAACCGCGCACACCTTCCTCGAGATTGTACGTGCCCG
ATGGGGAACTATCGCACATCTCTCTTTCATGGTGTTCGCCATGATAACGA
ACGTTATCGTTACAAGTCTGTTAGTTCTGGGTGCGAGCGTCACTGTCAAT
GTACTTACGGGAATGAACGTGGATCTTGCAAGCTTCTTGATTCCCTTGGG
TGTAATTCTTTACACGCTGGCAGGGGGTCTCAAGGCCACCTTTGTGGCCA
GCTATTTCAATACCGCTGTTATTCTAATATCATTGGTTGTCTTTATGTTT
AAGGTTTATGTCACTTCAGAGGATTTGGGATCTCCGAGCACGGTCTACGA
GAGATTGCAATTCGTCTCCAGTATCGAGCAGGTTGAGGGAAATCTCGGAG
GGTCGTATTTAACTATTCTTTCACGAAGAGGTTTCTTTTTCGGAATGGTT
AACCTTGTTGGCAATTTTGGCACTGTTTTTATCGACCAGTCATATTGGCA
GTCAGCGATTGCAGCTACTCCAACTGCATCATGGAAAGGATATCTTTTGG
GTGGTCTTTGTTGGTTTGCGATTCCGTTTTCTCTGGCATCTTCTCTCGGT
CTTGCTGCCGTAGCACTTTCTCTTCCTTTGACAAATGACGAAGCTGAGCA
AGGTTTGGTGCCGCCAGCAACTGCTATTCATCTTATGGGAAACAACGGGG
CATCTTTGGTGCTAGTGATGTTGTTTATGGCAGTAACGTCTTCTGGAGCG
TCTGAGCAGATTGCTCTTTCTTCGCTGGTAGCCTATGATGTGTTCAGAAC
GTACATCAACCCTAACTGCTCAGGACAGCAAGTTATTTTTCTCTCGCGTA
TTGTTATTCTCATATACGGGTTGTTGATGGGAGGTCTTGGTATAGCCTTT
CACCACATTGGTGTCAATTTGGACTTTTTGTACAAAGCAATGGGTGTGTT
CATAGGACCAGCAGTGGTGCCAGTTGCTTACTCAATATCTTGGGGGCGTT
GCTCTGCGAGAGGAGCCGTTTTAGGAGCTTGGACGGGCTTGCTTTGCGGC
CTGGCCGTTTGGTTTGGTTATGCGGGCTCATATCCCGGCGGCGTGACAAT
AAGAAACCTGAAAATAGATGAGGTTATGGTAGCTGGAAATCTCACGTCCA
TTCTATCTTCAGCAGTGGTGTGCACGATAATCAGTATTCTCAAGCCTGAT
GATTGTGACTGGAGCACCACGAAAGCTATACCTTTGATTGAAGATGACCC
TAACGCACATATAGCCTTTGAAACTGAAGAAGCGCTCGAAAAAGCCCTGA
AGAGAATCGGCGTGATCGGCTTAATCGTAGCCTTCGTACTAATGATCTTG
TGGCCGGCACTTGCGTTACCAGCAAGAGTTTTCTCGAAAAACTATTTTCA
GTTTTGGGTCATTATATCCTTCATATGGGGCATGATCTCATGCTCACTGA
TGGTCATCTTGCCCATCATCGAGTCCCGCCAAGGAATCTTGACATTAATT
ACAGGCGGACGAATGGGTTTGGCCCGGAAAGCAGAGGATGAAGATGTCGG
GCTTCAAGACTTCGTGATTGAAGAGAGATGA