Gvermi12848.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12848.t2
Unique Name	Gvermi12848.t2
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	658

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1791495..1793468 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX39035
Preferred name	TRPC4AP
PFAMs	DUF3689
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11796
GOs	GO:0000151,GO:0001942,GO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0007275,GO:0008150,GO:0008152,GO:0008324,GO:0008544,GO:0009056,GO:0009057,GO:0009888,GO:0009987,GO:0015075,GO:0015085,GO:0015267,GO:0015318,GO:0016020,GO:0016567,GO:0019538,GO:0019899,GO:0019902,GO:0019941,GO:0021700,GO:0022404,GO:0022405,GO:0022803,GO:0022838,GO:0022857,GO:0022890,GO:0030001,GO:0030163,GO:0031461,GO:0031464,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0036211,GO:0042303,GO:0042633,GO:0043170,GO:0043412,GO:0043588,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0046873,GO:0048513,GO:0048731,GO:0048820,GO:0048856,GO:0051179,GO:0051234,GO:0051603,GO:0055085,GO:0060429,GO:0070588,GO:0070647,GO:0070838,GO:0071695,GO:0071704,GO:0071944,GO:0072511,GO:0080008,GO:0098655,GO:0098660,GO:0098662,GO:0098773,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Evalue	1.37e-38
EggNOG OGs	2CMDE@1\|root,2QQ1C@2759\|Eukaryota
Description	hair follicle maturation
COG category	S
BRITE	ko00000,ko01009,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12848	Gvermi12848	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1791495..1794341 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12848.t2.stop1	Gvermi12848.t2.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1791495..1791497 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12848.t2.CDS1	Gvermi12848.t2.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1791495..1793468 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12848.t2.exon1	Gvermi12848.t2.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1791495..1793468 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12848.t2.start1	Gvermi12848.t2.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1793466..1793468 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12848.t2	Gvermi12848.t2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1791495..1793468 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1791495..1793468-
coding sequence from alignment at ScGOVlb_425:1791495..1793468-

mRNA sequence

>Gvermi12848.t2 ID=Gvermi12848.t2|Name=Gvermi12848.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=658bp
MLPSPLEAFLQNNDSPDPLHVPQDIRQRINLAFQRGFDPELGDASGAESW
DALDRRIAESHVSTNHHVALRTDANNFVAVSSHLSYADPPQSAILPEPAH
YAMDTDNLQDTTSEYVVQQLLYTHIPPLTARALPIDYTPSVSSLIMSSHQ
IDVLFVLYSMLMCKRKADVRRQLIDAGIFDALNRFCDGFDWSDCPHETHT
EDSLKMQFIRLVHSICDSSDENVMVARKRLMFSKHERKILAAMEQGCEFP
SLPCASPASVTSSEMPAIERLSLSSLVPPLSSPLDSNGEGPASKLSYMFP
RRTSSANDTSLIDSGAQVEEPFSLSGSPRMNRTCSAPTTPLPEMHNRVAQ
DAYEQEGLLTKILRVYRMTKGEDDVSRTRRYLLSACVESFQRSATLCEKT
FVARQGLLKHLVEQLAVFTGPKSQTIMFRQTSFDLLSQLIKWNRALFREL
NEMLQADRLLLDRLLKAVSDRLVDSNVFVRSIALSLERFRAEDELTQDQG
QAYDFDSCVLWEFVETYRVQLIHDMISSVRVEEITFENVCCVNTALILFV
ISCRDGEAMDKMLSRLSEMIIEHARSTKPQDFPVNSILPVDVMDNFCKLV
KFWLNYYRYQAADVSSLEVNTNISFDVFVETAIRLRDRLPAYDRLVGRRI
RAAPKFS*

spliced messenger RNA

>Gvermi12848.t2 ID=Gvermi12848.t2|Name=Gvermi12848.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1974bp|location=Sequence derived from alignment at ScGOVlb_425:1791495..1793468- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCAAGCCCTCTAGAAGCTTTTCTGCAAAACAATGATAGCCCGGA
CCCTCTGCATGTGCCGCAAGATATTAGGCAGCGAATTAACCTTGCCTTTC
AACGCGGCTTCGATCCTGAGCTTGGAGACGCCTCCGGTGCTGAAAGTTGG
GATGCGCTGGACAGAAGAATCGCCGAGTCCCATGTGTCAACGAATCATCA
CGTTGCTCTACGTACTGATGCGAACAACTTTGTTGCTGTTTCTTCACATT
TATCCTACGCGGATCCGCCGCAATCTGCCATCCTCCCCGAGCCTGCACAC
TATGCGATGGACACTGACAATTTACAAGACACCACTTCAGAATATGTTGT
ACAGCAACTTCTTTATACACATATCCCTCCCCTTACTGCACGAGCGCTCC
CTATAGACTACACCCCATCGGTCAGTTCCCTGATCATGTCATCGCATCAG
ATTGACGTGTTGTTTGTTCTTTACTCAATGTTGATGTGCAAGCGCAAGGC
AGATGTCCGACGACAACTTATCGATGCCGGTATCTTTGATGCCCTCAATC
GCTTTTGCGATGGTTTCGACTGGTCTGATTGTCCACATGAAACCCATACC
GAGGATTCATTGAAGATGCAGTTCATCAGGCTTGTACATTCGATTTGTGA
TTCATCTGACGAGAACGTCATGGTCGCTCGGAAGAGGCTCATGTTTAGCA
AACATGAGCGAAAAATCCTGGCGGCTATGGAGCAGGGTTGTGAATTTCCC
AGCCTTCCTTGTGCTTCCCCCGCTTCGGTTACAAGCTCTGAAATGCCAGC
GATAGAAAGACTCTCGCTGTCGTCGCTTGTGCCACCGTTGTCATCTCCGT
TGGACTCGAATGGAGAAGGTCCAGCCTCCAAGCTTTCGTACATGTTCCCC
CGCAGGACAAGTTCTGCAAATGATACGTCTTTGATTGATAGTGGCGCACA
GGTGGAGGAGCCATTCAGCTTGTCAGGCAGCCCCAGGATGAACAGGACTT
GTAGTGCGCCCACCACGCCGCTTCCGGAGATGCACAACCGCGTGGCGCAA
GATGCTTATGAGCAGGAAGGCTTGCTAACTAAAATTCTCCGAGTTTACAG
GATGACAAAAGGTGAAGACGATGTTTCCAGGACACGACGATACCTTCTGT
CCGCTTGCGTCGAATCGTTCCAACGAAGTGCCACACTCTGCGAAAAAACT
TTTGTGGCACGTCAAGGCCTTCTGAAGCACCTGGTGGAACAGCTCGCCGT
TTTCACTGGTCCCAAGTCACAAACCATCATGTTTAGGCAGACAAGCTTTG
ACCTGTTGAGTCAGCTAATCAAATGGAACCGAGCCCTGTTTCGGGAACTC
AACGAAATGCTGCAGGCCGACCGTTTGTTACTGGACCGGTTGTTGAAAGC
TGTCTCCGATCGGCTGGTGGATTCAAATGTGTTTGTTCGCTCGATCGCGT
TGTCCCTGGAAAGATTTCGGGCTGAGGATGAGCTCACTCAAGATCAAGGG
CAGGCATACGACTTTGATAGTTGTGTACTTTGGGAGTTCGTTGAGACTTA
TAGGGTGCAGCTGATTCATGACATGATATCTAGTGTTCGAGTAGAGGAAA
TAACGTTCGAAAATGTGTGTTGTGTGAATACGGCTCTGATCCTATTTGTA
ATCTCGTGTCGTGACGGAGAGGCGATGGACAAAATGCTATCACGCCTGTC
GGAAATGATCATTGAGCATGCGAGGTCGACCAAGCCGCAGGATTTTCCCG
TCAACTCAATACTTCCTGTGGATGTGATGGACAACTTCTGCAAGCTGGTT
AAATTCTGGTTAAATTATTACCGGTATCAGGCTGCTGATGTTTCGTCGTT
GGAAGTGAACACGAATATCTCGTTCGATGTGTTCGTTGAGACGGCAATTC
GGCTGAGAGATCGGTTGCCGGCGTACGACAGATTGGTGGGCAGGAGAATT
AGAGCTGCGCCAAAGTTCTCATGA

protein sequence of Gvermi12848.t2

>Gvermi12848.t2 ID=Gvermi12848.t2|Name=Gvermi12848.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=658bp
MLPSPLEAFLQNNDSPDPLHVPQDIRQRINLAFQRGFDPELGDASGAESW
DALDRRIAESHVSTNHHVALRTDANNFVAVSSHLSYADPPQSAILPEPAH
YAMDTDNLQDTTSEYVVQQLLYTHIPPLTARALPIDYTPSVSSLIMSSHQ
IDVLFVLYSMLMCKRKADVRRQLIDAGIFDALNRFCDGFDWSDCPHETHT
EDSLKMQFIRLVHSICDSSDENVMVARKRLMFSKHERKILAAMEQGCEFP
SLPCASPASVTSSEMPAIERLSLSSLVPPLSSPLDSNGEGPASKLSYMFP
RRTSSANDTSLIDSGAQVEEPFSLSGSPRMNRTCSAPTTPLPEMHNRVAQ
DAYEQEGLLTKILRVYRMTKGEDDVSRTRRYLLSACVESFQRSATLCEKT
FVARQGLLKHLVEQLAVFTGPKSQTIMFRQTSFDLLSQLIKWNRALFREL
NEMLQADRLLLDRLLKAVSDRLVDSNVFVRSIALSLERFRAEDELTQDQG
QAYDFDSCVLWEFVETYRVQLIHDMISSVRVEEITFENVCCVNTALILFV
ISCRDGEAMDKMLSRLSEMIIEHARSTKPQDFPVNSILPVDVMDNFCKLV
KFWLNYYRYQAADVSSLEVNTNISFDVFVETAIRLRDRLPAYDRLVGRRI
RAAPKFS*

mRNA from alignment at ScGOVlb_425:1791495..1793468-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12848.t2 ID=Gvermi12848.t2|Name=Gvermi12848.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1974bp|location=Sequence derived from alignment at ScGOVlb_425:1791495..1793468- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTCCAAGCCCTCTAGAAGCTTTTCTGCAAAACAATGATAGCCCGGA
CCCTCTGCATGTGCCGCAAGATATTAGGCAGCGAATTAACCTTGCCTTTC
AACGCGGCTTCGATCCTGAGCTTGGAGACGCCTCCGGTGCTGAAAGTTGG
GATGCGCTGGACAGAAGAATCGCCGAGTCCCATGTGTCAACGAATCATCA
CGTTGCTCTACGTACTGATGCGAACAACTTTGTTGCTGTTTCTTCACATT
TATCCTACGCGGATCCGCCGCAATCTGCCATCCTCCCCGAGCCTGCACAC
TATGCGATGGACACTGACAATTTACAAGACACCACTTCAGAATATGTTGT
ACAGCAACTTCTTTATACACATATCCCTCCCCTTACTGCACGAGCGCTCC
CTATAGACTACACCCCATCGGTCAGTTCCCTGATCATGTCATCGCATCAG
ATTGACGTGTTGTTTGTTCTTTACTCAATGTTGATGTGCAAGCGCAAGGC
AGATGTCCGACGACAACTTATCGATGCCGGTATCTTTGATGCCCTCAATC
GCTTTTGCGATGGTTTCGACTGGTCTGATTGTCCACATGAAACCCATACC
GAGGATTCATTGAAGATGCAGTTCATCAGGCTTGTACATTCGATTTGTGA
TTCATCTGACGAGAACGTCATGGTCGCTCGGAAGAGGCTCATGTTTAGCA
AACATGAGCGAAAAATCCTGGCGGCTATGGAGCAGGGTTGTGAATTTCCC
AGCCTTCCTTGTGCTTCCCCCGCTTCGGTTACAAGCTCTGAAATGCCAGC
GATAGAAAGACTCTCGCTGTCGTCGCTTGTGCCACCGTTGTCATCTCCGT
TGGACTCGAATGGAGAAGGTCCAGCCTCCAAGCTTTCGTACATGTTCCCC
CGCAGGACAAGTTCTGCAAATGATACGTCTTTGATTGATAGTGGCGCACA
GGTGGAGGAGCCATTCAGCTTGTCAGGCAGCCCCAGGATGAACAGGACTT
GTAGTGCGCCCACCACGCCGCTTCCGGAGATGCACAACCGCGTGGCGCAA
GATGCTTATGAGCAGGAAGGCTTGCTAACTAAAATTCTCCGAGTTTACAG
GATGACAAAAGGTGAAGACGATGTTTCCAGGACACGACGATACCTTCTGT
CCGCTTGCGTCGAATCGTTCCAACGAAGTGCCACACTCTGCGAAAAAACT
TTTGTGGCACGTCAAGGCCTTCTGAAGCACCTGGTGGAACAGCTCGCCGT
TTTCACTGGTCCCAAGTCACAAACCATCATGTTTAGGCAGACAAGCTTTG
ACCTGTTGAGTCAGCTAATCAAATGGAACCGAGCCCTGTTTCGGGAACTC
AACGAAATGCTGCAGGCCGACCGTTTGTTACTGGACCGGTTGTTGAAAGC
TGTCTCCGATCGGCTGGTGGATTCAAATGTGTTTGTTCGCTCGATCGCGT
TGTCCCTGGAAAGATTTCGGGCTGAGGATGAGCTCACTCAAGATCAAGGG
CAGGCATACGACTTTGATAGTTGTGTACTTTGGGAGTTCGTTGAGACTTA
TAGGGTGCAGCTGATTCATGACATGATATCTAGTGTTCGAGTAGAGGAAA
TAACGTTCGAAAATGTGTGTTGTGTGAATACGGCTCTGATCCTATTTGTA
ATCTCGTGTCGTGACGGAGAGGCGATGGACAAAATGCTATCACGCCTGTC
GGAAATGATCATTGAGCATGCGAGGTCGACCAAGCCGCAGGATTTTCCCG
TCAACTCAATACTTCCTGTGGATGTGATGGACAACTTCTGCAAGCTGGTT
AAATTCTGGTTAAATTATTACCGGTATCAGGCTGCTGATGTTTCGTCGTT
GGAAGTGAACACGAATATCTCGTTCGATGTGTTCGTTGAGACGGCAATTC
GGCTGAGAGATCGGTTGCCGGCGTACGACAGATTGGTGGGCAGGAGAATT
AGAGCTGCGCCAAAGTTCTCATGA

Coding sequence (CDS) from alignment at ScGOVlb_425:1791495..1793468-

>Gvermi12848.t2 ID=Gvermi12848.t2|Name=Gvermi12848.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1974bp|location=Sequence derived from alignment at ScGOVlb_425:1791495..1793468- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTCCAAGCCCTCTAGAAGCTTTTCTGCAAAACAATGATAGCCCGGA
CCCTCTGCATGTGCCGCAAGATATTAGGCAGCGAATTAACCTTGCCTTTC
AACGCGGCTTCGATCCTGAGCTTGGAGACGCCTCCGGTGCTGAAAGTTGG
GATGCGCTGGACAGAAGAATCGCCGAGTCCCATGTGTCAACGAATCATCA
CGTTGCTCTACGTACTGATGCGAACAACTTTGTTGCTGTTTCTTCACATT
TATCCTACGCGGATCCGCCGCAATCTGCCATCCTCCCCGAGCCTGCACAC
TATGCGATGGACACTGACAATTTACAAGACACCACTTCAGAATATGTTGT
ACAGCAACTTCTTTATACACATATCCCTCCCCTTACTGCACGAGCGCTCC
CTATAGACTACACCCCATCGGTCAGTTCCCTGATCATGTCATCGCATCAG
ATTGACGTGTTGTTTGTTCTTTACTCAATGTTGATGTGCAAGCGCAAGGC
AGATGTCCGACGACAACTTATCGATGCCGGTATCTTTGATGCCCTCAATC
GCTTTTGCGATGGTTTCGACTGGTCTGATTGTCCACATGAAACCCATACC
GAGGATTCATTGAAGATGCAGTTCATCAGGCTTGTACATTCGATTTGTGA
TTCATCTGACGAGAACGTCATGGTCGCTCGGAAGAGGCTCATGTTTAGCA
AACATGAGCGAAAAATCCTGGCGGCTATGGAGCAGGGTTGTGAATTTCCC
AGCCTTCCTTGTGCTTCCCCCGCTTCGGTTACAAGCTCTGAAATGCCAGC
GATAGAAAGACTCTCGCTGTCGTCGCTTGTGCCACCGTTGTCATCTCCGT
TGGACTCGAATGGAGAAGGTCCAGCCTCCAAGCTTTCGTACATGTTCCCC
CGCAGGACAAGTTCTGCAAATGATACGTCTTTGATTGATAGTGGCGCACA
GGTGGAGGAGCCATTCAGCTTGTCAGGCAGCCCCAGGATGAACAGGACTT
GTAGTGCGCCCACCACGCCGCTTCCGGAGATGCACAACCGCGTGGCGCAA
GATGCTTATGAGCAGGAAGGCTTGCTAACTAAAATTCTCCGAGTTTACAG
GATGACAAAAGGTGAAGACGATGTTTCCAGGACACGACGATACCTTCTGT
CCGCTTGCGTCGAATCGTTCCAACGAAGTGCCACACTCTGCGAAAAAACT
TTTGTGGCACGTCAAGGCCTTCTGAAGCACCTGGTGGAACAGCTCGCCGT
TTTCACTGGTCCCAAGTCACAAACCATCATGTTTAGGCAGACAAGCTTTG
ACCTGTTGAGTCAGCTAATCAAATGGAACCGAGCCCTGTTTCGGGAACTC
AACGAAATGCTGCAGGCCGACCGTTTGTTACTGGACCGGTTGTTGAAAGC
TGTCTCCGATCGGCTGGTGGATTCAAATGTGTTTGTTCGCTCGATCGCGT
TGTCCCTGGAAAGATTTCGGGCTGAGGATGAGCTCACTCAAGATCAAGGG
CAGGCATACGACTTTGATAGTTGTGTACTTTGGGAGTTCGTTGAGACTTA
TAGGGTGCAGCTGATTCATGACATGATATCTAGTGTTCGAGTAGAGGAAA
TAACGTTCGAAAATGTGTGTTGTGTGAATACGGCTCTGATCCTATTTGTA
ATCTCGTGTCGTGACGGAGAGGCGATGGACAAAATGCTATCACGCCTGTC
GGAAATGATCATTGAGCATGCGAGGTCGACCAAGCCGCAGGATTTTCCCG
TCAACTCAATACTTCCTGTGGATGTGATGGACAACTTCTGCAAGCTGGTT
AAATTCTGGTTAAATTATTACCGGTATCAGGCTGCTGATGTTTCGTCGTT
GGAAGTGAACACGAATATCTCGTTCGATGTGTTCGTTGAGACGGCAATTC
GGCTGAGAGATCGGTTGCCGGCGTACGACAGATTGGTGGGCAGGAGAATT
AGAGCTGCGCCAAAGTTCTCATGA