Gvermi12716.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12716.t1
Unique NameGvermi12716.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length445
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1109421..1110938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703958.1
Preferred namesrk1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08286,ko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
GOsGO:0000166,GO:0000935,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007231,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0010389,GO:0010515,GO:0010564,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030428,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031647,GO:0031974,GO:0031981,GO:0032092,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0033043,GO:0033554,GO:0034399,GO:0034599,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040020,GO:0042221,GO:0042763,GO:0042764,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043900,GO:0043901,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045930,GO:0046999,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051098,GO:0051099,GO:0051128,GO:0051285,GO:0051286,GO:0051445,GO:0051716,GO:0051726,GO:0051783,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0072324,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0104004,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903827,GO:1903828,GO:2000241,GO:2000242
Evalue1.73e-54
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.17
Descriptionprotein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12716Gvermi12716Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1109421..1110938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12716.t1Gvermi12716.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1109421..1110938 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12716.t1.start1Gvermi12716.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1109421..1109423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12716.t1.CDS1Gvermi12716.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1109421..1110137 +
Gvermi12716.t1.CDS2Gvermi12716.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1110237..1110438 +
Gvermi12716.t1.CDS3Gvermi12716.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1110523..1110938 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12716.t1.exon1Gvermi12716.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1109421..1110137 +
Gvermi12716.t1.exon2Gvermi12716.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1110237..1110438 +
Gvermi12716.t1.exon3Gvermi12716.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1110523..1110938 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12716.t1.intron1Gvermi12716.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1110138..1110236 +
Gvermi12716.t1.intron2Gvermi12716.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1110439..1110522 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12716.t1.stop1Gvermi12716.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1110936..1110938 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12716.t1 ID=Gvermi12716.t1|Name=Gvermi12716.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=445bp
MRSEDEDQTLFRLKGPKVHVYKHGRLYTRAFLRPRRLITADLRGTTLSVN
YHHPNQTTSYDLREAQLFTVENSHKILLQLPTKKNLCFFAHDAEEFDSWK
QALTESIQWGIELFYELHEILGQGAFATVVRGLHRQTNDVVAIKKLSKTL
CSEQDLAFLQREVDILQKLKHPNVIHMSDLFESPETLYVVLEFMGGGTLL
SFTTSNSPLSEANVRDIMKDILRGIQYVHSKGIVHRDIKPENLMCTSKEI
PTTVKILDFGLSRVTVKTCSGDPEQEEVGLGPGGLMTSPVGTPNFAAPEM
LSGLPYDRLLALIKQTAFEFPEREWCRVSDEAKDVIGGLLDRSPYERLSA
EQALQHRWFHMQLPTNAIQNAAVEEQWACGALSRDQHMVGTNIDLGDIVN
VRNVSQTNTGSQKCLSLQAAKIPTVLDDWQLLEQPPERSASWKR*
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spliced messenger RNA

>Gvermi12716.t1 ID=Gvermi12716.t1|Name=Gvermi12716.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at ScGOVlb_425:1109421..1110938+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGATCAGAAGACGAGGACCAAACTCTGTTTCGCCTCAAGGGACCAAA
GGTGCATGTGTACAAACATGGGCGACTTTACACTAGAGCGTTTCTGCGAC
CTAGACGGCTCATCACTGCCGACCTGCGAGGGACAACGCTTTCGGTCAAC
TACCATCACCCCAACCAGACCACGAGTTACGACCTTCGTGAAGCACAACT
CTTCACTGTCGAAAACTCTCACAAGATTTTGCTCCAACTGCCCACGAAAA
AAAACCTCTGCTTCTTTGCACACGATGCCGAGGAGTTCGACTCCTGGAAG
CAGGCCTTGACGGAAAGCATTCAGTGGGGCATAGAACTATTTTACGAACT
GCACGAAATACTCGGACAAGGAGCGTTTGCAACTGTTGTTCGAGGTCTCC
ATCGTCAGACCAATGATGTTGTGGCGATAAAAAAACTCTCCAAAACGTTG
TGCAGCGAGCAAGATTTGGCTTTCCTCCAAAGAGAGGTTGATATTCTTCA
GAAACTGAAGCATCCCAACGTAATTCACATGTCCGATCTCTTTGAATCTC
CGGAAACCTTGTACGTGGTTCTTGAATTCATGGGCGGTGGCACTCTTCTA
TCTTTCACAACATCGAACAGCCCGTTATCAGAAGCCAATGTGCGTGACAT
AATGAAGGACATTCTGAGAGGTATTCAATACGTACATTCAAAAGGTATTG
TTCACCGAGACATTAAGCCAGAGAACCTGATGTGCACTTCGAAAGAAATC
CCGACAACCGTTAAGATCCTGGACTTTGGGCTCAGTCGGGTGACAGTCAA
GACGTGCAGTGGTGACCCAGAGCAGGAGGAAGTTGGGCTCGGGCCAGGCG
GTCTCATGACGTCCCCAGTGGGAACGCCAAACTTCGCGGCCCCGGAAATG
CTCTCCGGCTTGCCCTACGACAGACTGTTGGCCCTAATCAAGCAGACGGC
GTTCGAATTTCCCGAGAGGGAATGGTGCAGGGTCTCGGATGAGGCCAAGG
ACGTCATTGGCGGGTTGCTGGACAGGAGTCCATACGAGCGCCTCTCAGCC
GAGCAAGCGCTGCAACACCGCTGGTTTCACATGCAACTTCCAACAAATGC
CATTCAAAACGCAGCCGTTGAAGAACAATGGGCGTGTGGAGCACTATCTC
GCGACCAGCACATGGTGGGAACCAATATCGATTTGGGTGATATTGTCAAC
GTGAGAAATGTCAGCCAAACCAATACTGGGTCACAAAAATGTTTGTCACT
CCAAGCAGCCAAAATACCGACGGTGCTTGACGATTGGCAACTGCTGGAAC
AGCCGCCAGAGCGAAGCGCTTCGTGGAAGCGATGA
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protein sequence of Gvermi12716.t1

>Gvermi12716.t1 ID=Gvermi12716.t1|Name=Gvermi12716.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=445bp
MRSEDEDQTLFRLKGPKVHVYKHGRLYTRAFLRPRRLITADLRGTTLSVN
YHHPNQTTSYDLREAQLFTVENSHKILLQLPTKKNLCFFAHDAEEFDSWK
QALTESIQWGIELFYELHEILGQGAFATVVRGLHRQTNDVVAIKKLSKTL
CSEQDLAFLQREVDILQKLKHPNVIHMSDLFESPETLYVVLEFMGGGTLL
SFTTSNSPLSEANVRDIMKDILRGIQYVHSKGIVHRDIKPENLMCTSKEI
PTTVKILDFGLSRVTVKTCSGDPEQEEVGLGPGGLMTSPVGTPNFAAPEM
LSGLPYDRLLALIKQTAFEFPEREWCRVSDEAKDVIGGLLDRSPYERLSA
EQALQHRWFHMQLPTNAIQNAAVEEQWACGALSRDQHMVGTNIDLGDIVN
VRNVSQTNTGSQKCLSLQAAKIPTVLDDWQLLEQPPERSASWKR*
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mRNA from alignment at ScGOVlb_425:1109421..1110938+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12716.t1 ID=Gvermi12716.t1|Name=Gvermi12716.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at ScGOVlb_425:1109421..1110938+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGATCAGAAGACGAGGACCAAACTCTGTTTCGCCTCAAGGGACCAAA
GGTGCATGTGTACAAACATGGGCGACTTTACACTAGAGCGTTTCTGCGAC
CTAGACGGCTCATCACTGCCGACCTGCGAGGGACAACGCTTTCGGTCAAC
TACCATCACCCCAACCAGACCACGAGTTACGACCTTCGTGAAGCACAACT
CTTCACTGTCGAAAACTCTCACAAGATTTTGCTCCAACTGCCCACGAAAA
AAAACCTCTGCTTCTTTGCACACGATGCCGAGGAGTTCGACTCCTGGAAG
CAGGCCTTGACGGAAAGCATTCAGTGGGGCATAGAACTATTTTACGAACT
GCACGAAATACTCGGACAAGGAGCGTTTGCAACTGTTGTTCGAGGTCTCC
ATCGTCAGACCAATGATGTTGTGGCGATAAAAAAACTCTCCAAAACGTTG
TGCAGCGAGCAAGATTTGGCTTTCCTCCAAAGAGAGGTTGATATTCTTCA
GAAACTGAAGCATCCCAACGTAATTCACATGTCCGATCTCTTTGAATCTC
CGGAAACCTTGTACGTGGTTCTTGAATTCATGGGCGGTGGCACTCTTCTA
TCTTTCACAACATCGAACAGCCCGTTATCAGAAGCCAATGTGCGTGACAT
AATGAAGGACATTCTGAGAGGTATTCAATACGTACATTCAAAAGGTATTG
TTCACCGAGACATTAAGGTATGGACACGATTCCTTTCCTAATTCAAAGCG
AATGCTTCGCTTACCTACATTAACTAACGAGTATTTGACTCTTTAACCGC
TGTTCTCAACATCAAGCCAGAGAACCTGATGTGCACTTCGAAAGAAATCC
CGACAACCGTTAAGATCCTGGACTTTGGGCTCAGTCGGGTGACAGTCAAG
ACGTGCAGTGGTGACCCAGAGCAGGAGGAAGTTGGGCTCGGGCCAGGCGG
TCTCATGACGTCCCCAGTGGGAACGCCAAACTTCGCGGCCCCGGAAATGC
TCTCCGGCTTGCCCTACGGTAAGGAGGTTGACTGCTTCGCGTGCGGGGTA
GTAATGTATTGGTTACTCTGCGGCTACTACCCTTTTTTCGATTCTGATCC
AGACAGACTGTTGGCCCTAATCAAGCAGACGGCGTTCGAATTTCCCGAGA
GGGAATGGTGCAGGGTCTCGGATGAGGCCAAGGACGTCATTGGCGGGTTG
CTGGACAGGAGTCCATACGAGCGCCTCTCAGCCGAGCAAGCGCTGCAACA
CCGCTGGTTTCACATGCAACTTCCAACAAATGCCATTCAAAACGCAGCCG
TTGAAGAACAATGGGCGTGTGGAGCACTATCTCGCGACCAGCACATGGTG
GGAACCAATATCGATTTGGGTGATATTGTCAACGTGAGAAATGTCAGCCA
AACCAATACTGGGTCACAAAAATGTTTGTCACTCCAAGCAGCCAAAATAC
CGACGGTGCTTGACGATTGGCAACTGCTGGAACAGCCGCCAGAGCGAAGC
GCTTCGTGGAAGCGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1109421..1110938+

>Gvermi12716.t1 ID=Gvermi12716.t1|Name=Gvermi12716.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1335bp|location=Sequence derived from alignment at ScGOVlb_425:1109421..1110938+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGATCAGAAGACGAGGACCAAACTCTGTTTCGCCTCAAGGGACCAAA
GGTGCATGTGTACAAACATGGGCGACTTTACACTAGAGCGTTTCTGCGAC
CTAGACGGCTCATCACTGCCGACCTGCGAGGGACAACGCTTTCGGTCAAC
TACCATCACCCCAACCAGACCACGAGTTACGACCTTCGTGAAGCACAACT
CTTCACTGTCGAAAACTCTCACAAGATTTTGCTCCAACTGCCCACGAAAA
AAAACCTCTGCTTCTTTGCACACGATGCCGAGGAGTTCGACTCCTGGAAG
CAGGCCTTGACGGAAAGCATTCAGTGGGGCATAGAACTATTTTACGAACT
GCACGAAATACTCGGACAAGGAGCGTTTGCAACTGTTGTTCGAGGTCTCC
ATCGTCAGACCAATGATGTTGTGGCGATAAAAAAACTCTCCAAAACGTTG
TGCAGCGAGCAAGATTTGGCTTTCCTCCAAAGAGAGGTTGATATTCTTCA
GAAACTGAAGCATCCCAACGTAATTCACATGTCCGATCTCTTTGAATCTC
CGGAAACCTTGTACGTGGTTCTTGAATTCATGGGCGGTGGCACTCTTCTA
TCTTTCACAACATCGAACAGCCCGTTATCAGAAGCCAATGTGCGTGACAT
AATGAAGGACATTCTGAGAGGTATTCAATACGTACATTCAAAAGGTATTG
TTCACCGAGACATTAAGCCAGAGAACCTGATGTGCACTTCGAAAGAAATC
CCGACAACCGTTAAGATCCTGGACTTTGGGCTCAGTCGGGTGACAGTCAA
GACGTGCAGTGGTGACCCAGAGCAGGAGGAAGTTGGGCTCGGGCCAGGCG
GTCTCATGACGTCCCCAGTGGGAACGCCAAACTTCGCGGCCCCGGAAATG
CTCTCCGGCTTGCCCTACGACAGACTGTTGGCCCTAATCAAGCAGACGGC
GTTCGAATTTCCCGAGAGGGAATGGTGCAGGGTCTCGGATGAGGCCAAGG
ACGTCATTGGCGGGTTGCTGGACAGGAGTCCATACGAGCGCCTCTCAGCC
GAGCAAGCGCTGCAACACCGCTGGTTTCACATGCAACTTCCAACAAATGC
CATTCAAAACGCAGCCGTTGAAGAACAATGGGCGTGTGGAGCACTATCTC
GCGACCAGCACATGGTGGGAACCAATATCGATTTGGGTGATATTGTCAAC
GTGAGAAATGTCAGCCAAACCAATACTGGGTCACAAAAATGTTTGTCACT
CCAAGCAGCCAAAATACCGACGGTGCTTGACGATTGGCAACTGCTGGAAC
AGCCGCCAGAGCGAAGCGCTTCGTGGAAGCGATGA
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